Wall clock time and date at job start Tue Mar 31 2020 06:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42908 * 114.00182 * 2 1 4 4 H 1.09001 * 110.01476 * 331.39462 * 3 2 1 5 5 C 1.53874 * 110.03148 * 92.83039 * 3 2 1 6 6 C 1.54267 * 106.59639 * 119.28751 * 5 3 2 7 7 C 1.54894 * 104.19671 * 23.60954 * 6 5 3 8 8 H 1.09007 * 110.75271 * 80.37088 * 7 6 5 9 9 O 1.45193 * 110.75570 * 203.74131 * 7 6 5 10 10 C 1.34703 * 117.00126 * 263.32854 * 9 7 6 11 11 O 1.21469 * 119.99934 * 359.97438 * 10 9 7 12 12 C 1.47775 * 120.00152 * 180.02562 * 10 9 7 13 13 C 1.39972 * 120.02707 * 359.97438 * 12 10 9 14 14 C 1.38308 * 120.34886 * 180.02562 * 13 12 10 15 15 C 1.37761 * 120.42404 * 359.97438 * 14 13 12 16 16 C 1.40753 * 120.04733 * 359.97438 * 15 14 13 17 17 C 1.41440 * 120.17572 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00190 * 24.35608 * 17 16 15 19 19 C 1.39933 * 119.99757 * 204.35543 * 17 16 15 20 20 N 1.30822 * 120.00518 * 17.73970 * 19 17 16 21 21 Si 1.86804 * 120.00041 * 197.73389 * 19 17 16 22 22 H 1.48500 * 109.46753 * 90.00099 * 21 19 17 23 23 H 1.48495 * 109.47309 * 210.00236 * 21 19 17 24 24 H 1.48502 * 109.47179 * 330.00614 * 21 19 17 25 25 C 1.39046 * 120.03177 * 179.72681 * 12 10 9 26 26 C 1.54262 * 110.03320 * 210.00040 * 3 2 1 27 27 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47344 * 299.99898 * 1 2 3 29 29 H 1.08998 * 109.47592 * 59.99986 * 1 2 3 30 30 H 1.08991 * 110.03298 * 238.57297 * 5 3 2 31 31 H 1.08998 * 110.02998 * 359.95597 * 5 3 2 32 32 H 1.09005 * 110.48643 * 264.93598 * 6 5 3 33 33 H 1.08998 * 110.48735 * 142.28893 * 6 5 3 34 34 H 1.07995 * 119.82332 * 0.02684 * 13 12 10 35 35 H 1.08011 * 119.78960 * 180.02562 * 14 13 12 36 36 H 1.07994 * 119.98072 * 180.02562 * 15 14 13 37 37 H 0.97000 * 120.00601 * 179.97438 * 20 19 17 38 38 H 1.08000 * 120.20319 * 359.97438 * 25 12 10 39 39 H 1.09008 * 110.48433 * 98.42592 * 26 3 2 40 40 H 1.08996 * 110.48873 * 335.78391 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3406 2.0121 -0.4904 5 6 2.2898 1.7580 1.4439 6 6 3.8116 1.9894 1.5463 7 6 4.2539 2.2590 0.0865 8 1 4.0445 3.2908 -0.1962 9 8 5.6619 1.9513 -0.0897 10 6 6.5278 2.9797 -0.0057 11 8 6.1179 4.1029 0.2084 12 6 7.9764 2.7416 -0.1752 13 6 8.4493 1.4477 -0.4225 14 6 9.8038 1.2172 -0.5817 15 6 10.7029 2.2577 -0.4993 16 6 10.2461 3.5660 -0.2523 17 6 11.1668 4.6364 -0.1677 18 1 12.1261 4.5635 -0.6583 19 6 10.8345 5.7898 0.5516 20 7 9.8557 5.7605 1.4190 21 14 11.7888 7.3714 0.2733 22 1 11.1395 8.1578 -0.8061 23 1 11.8027 8.1681 1.5264 24 1 13.1827 7.0455 -0.1216 25 6 8.8703 3.8036 -0.0942 26 6 3.3718 1.2777 -0.7247 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.7563 2.6847 1.6547 31 1 1.9814 0.9821 2.1446 32 1 4.3072 1.1006 1.9370 33 1 4.0246 2.8537 2.1752 34 1 7.7530 0.6249 -0.4894 35 1 10.1588 0.2152 -0.7726 36 1 11.7589 2.0697 -0.6251 37 1 9.6256 6.5600 1.9179 38 1 8.5096 4.8044 0.0920 39 1 3.2637 1.6228 -1.7530 40 1 3.7963 0.2741 -0.7007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282572145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:59 Heat of formation + Delta-G solvation = -140.996589 kcal Electronic energy + Delta-G solvation = -22442.561978 eV Core-core repulsion = 18992.884762 eV Total energy + Delta-G solvation = -3449.677215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61128 -39.96031 -39.10865 -37.66533 -36.04027 -35.59006 -32.22313 -31.37321 -29.92095 -28.88820 -27.29202 -26.92500 -25.04304 -22.87812 -22.04378 -21.62049 -21.28424 -19.71798 -18.45861 -17.84996 -17.53142 -17.18256 -16.79433 -16.51673 -16.24427 -15.99483 -15.33864 -15.17467 -15.03412 -14.52183 -14.43960 -14.23749 -13.57888 -13.40022 -13.25433 -13.01257 -12.97023 -12.83832 -12.62475 -12.55746 -12.34574 -12.22306 -12.04573 -11.91539 -11.55352 -11.50333 -11.43878 -11.25139 -11.10768 -10.56295 -9.62866 -9.45711 -8.69377 -6.40665 0.11933 0.95726 1.37482 1.46145 1.51892 1.63529 1.78980 2.18703 2.70956 2.83606 3.37921 3.44571 3.62377 3.81479 3.83343 4.15982 4.26840 4.30876 4.35699 4.43271 4.48781 4.59505 4.61477 4.62347 4.75587 4.77596 4.90895 4.92558 4.94811 5.02596 5.04963 5.11035 5.13012 5.27393 5.40538 5.46253 5.81132 5.88770 6.00301 6.21969 6.27321 6.52126 6.80707 6.85993 6.88215 8.28171 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028193 B = 0.003290 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.915462 B = 8507.684695 C = 9232.260726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.402 6.402 3 C 0.091 3.909 4 H 0.091 0.909 5 C -0.134 4.134 6 C -0.137 4.137 7 C 0.069 3.931 8 H 0.085 0.915 9 O -0.340 6.340 10 C 0.515 3.485 11 O -0.545 6.545 12 C -0.130 4.130 13 C -0.182 4.182 14 C -0.099 4.099 15 C -0.204 4.204 16 C 0.065 3.935 17 C -0.493 4.493 18 H 0.088 0.912 19 C 0.030 3.970 20 N -0.826 5.826 21 Si 0.985 3.015 22 H -0.266 1.266 23 H -0.270 1.270 24 H -0.250 1.250 25 C -0.123 4.123 26 C -0.111 4.111 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.116 0.884 37 H 0.288 0.712 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.003 -7.441 -1.867 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.034 3.966 4 H 0.108 0.892 5 C -0.172 4.172 6 C -0.175 4.175 7 C 0.014 3.986 8 H 0.103 0.897 9 O -0.257 6.257 10 C 0.363 3.637 11 O -0.437 6.437 12 C -0.131 4.131 13 C -0.201 4.201 14 C -0.116 4.116 15 C -0.223 4.223 16 C 0.063 3.937 17 C -0.522 4.522 18 H 0.106 0.894 19 C -0.185 4.185 20 N -0.452 5.452 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.173 1.173 25 C -0.142 4.142 26 C -0.149 4.149 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.189 -7.168 -1.614 16.872 hybrid contribution 0.175 1.263 0.269 1.303 sum -15.013 -5.905 -1.345 16.189 Atomic orbital electron populations 1.23001 0.79449 1.03888 1.01005 1.87936 1.21492 1.27640 1.95049 1.22649 0.93790 0.85176 0.95021 0.89157 1.22593 0.93934 1.02980 0.97710 1.22693 0.97539 1.02263 0.95000 1.23928 0.76559 1.00523 0.97620 0.89730 1.86611 1.18893 1.37787 1.82423 1.21704 0.88121 0.82214 0.71622 1.90719 1.80107 1.25499 1.47379 1.19103 0.87742 0.96557 1.09685 1.20948 0.96287 0.94493 1.08401 1.20961 0.92473 0.98951 0.99254 1.21506 0.99131 0.92220 1.09481 1.17917 0.91767 0.93526 0.90498 1.19870 1.02835 0.99848 1.29654 0.89381 1.26875 0.95776 1.03833 0.92063 1.69870 1.26668 1.31458 1.17181 0.85157 0.79463 0.76153 0.78706 1.19045 1.19463 1.17326 1.21470 0.93029 0.97339 1.02400 1.22442 0.93234 1.00141 0.99054 0.88556 0.93026 0.92907 0.89375 0.89432 0.90662 0.91900 0.85147 0.84126 0.86595 0.90147 0.87594 0.89033 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.85 113.37 1.23 1.51 16 2 O -0.40 -7.99 10.26 -148.98 -1.53 -9.52 16 3 C 0.09 1.74 3.39 31.32 0.11 1.85 16 4 H 0.09 1.34 7.80 -2.39 -0.02 1.32 16 5 C -0.13 -2.61 6.61 31.32 0.21 -2.40 16 6 C -0.14 -3.67 6.56 31.67 0.21 -3.47 16 7 C 0.07 2.08 3.28 31.89 0.10 2.18 16 8 H 0.08 2.72 7.14 -2.38 -0.02 2.71 16 9 O -0.34 -13.00 9.26 -56.13 -0.52 -13.51 16 10 C 0.52 23.90 7.90 70.34 0.56 24.45 16 11 O -0.55 -27.73 15.58 19.94 0.31 -27.42 16 12 C -0.13 -6.40 5.87 -20.14 -0.12 -6.52 16 13 C -0.18 -7.81 9.62 22.71 0.22 -7.59 16 14 C -0.10 -4.04 10.01 22.17 0.22 -3.82 16 15 C -0.20 -9.48 9.78 22.77 0.22 -9.26 16 16 C 0.07 3.51 5.57 -21.32 -0.12 3.39 16 17 C -0.49 -26.34 9.05 23.47 0.21 -26.12 16 18 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 19 C 0.03 1.52 5.14 85.25 0.44 1.95 16 20 N -0.83 -45.27 10.95 21.82 0.24 -45.03 16 21 Si 0.98 38.81 29.59 68.60 2.03 40.84 16 22 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 24 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 25 C -0.12 -6.80 8.24 23.02 0.19 -6.61 16 26 C -0.11 -2.61 6.29 31.67 0.20 -2.41 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.05 0.53 8.10 -2.39 -0.02 0.52 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.59 7.95 -2.39 -0.02 1.57 16 32 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.13 4.86 7.59 -2.91 -0.02 4.84 16 35 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 38 H 0.11 6.42 5.74 -2.91 -0.02 6.41 16 39 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.09 2.19 8.08 -2.39 -0.02 2.17 16 Total: -1.00 -65.03 338.70 5.44 -59.59 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 1.03 Total: 27.91 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 3.88 Total: -32.86 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.24 Total: -45.03 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -1.74 Total: -50.46 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -65.03 5.44 -59.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282572145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.405 kcal (2) G-P(sol) polarization free energy of solvation -65.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds