Wall clock time and date at job start Tue Mar 31 2020 06:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 113.99705 * 2 1 4 4 H 1.09000 * 110.01993 * 331.38545 * 3 2 1 5 5 C 1.54268 * 110.07419 * 92.81031 * 3 2 1 6 6 C 1.55235 * 104.23657 * 142.91743 * 5 3 2 7 7 C 1.54894 * 102.58295 * 322.08408 * 6 5 3 8 8 H 1.09002 * 110.48348 * 279.18468 * 7 6 5 9 9 O 1.45202 * 110.48502 * 156.67894 * 7 6 5 10 10 C 1.34779 * 117.00306 * 93.23880 * 9 7 6 11 11 O 1.21507 * 119.99662 * 0.02562 * 10 9 7 12 12 C 1.47509 * 119.99969 * 179.97438 * 10 9 7 13 13 C 1.40062 * 119.90198 * 359.73051 * 12 10 9 14 14 C 1.36299 * 120.10126 * 179.75824 * 13 12 10 15 15 C 1.40895 * 119.89412 * 0.51161 * 14 13 12 16 16 C 1.41097 * 120.09768 * 179.71835 * 15 14 13 17 17 H 1.07997 * 120.00421 * 204.66172 * 16 15 14 18 18 C 1.40244 * 120.00039 * 24.66212 * 16 15 14 19 19 N 1.30639 * 120.00071 * 17.85838 * 18 16 15 20 20 Si 1.86801 * 120.00166 * 197.86422 * 18 16 15 21 21 H 1.48501 * 109.46805 * 89.99804 * 20 18 16 22 22 H 1.48501 * 109.47196 * 209.99785 * 20 18 16 23 23 H 1.48493 * 109.47005 * 329.99595 * 20 18 16 24 24 C 1.40905 * 119.80730 * 359.73708 * 15 14 13 25 25 C 1.36297 * 119.89120 * 0.02562 * 24 15 14 26 26 C 1.53874 * 110.03186 * 209.99452 * 3 2 1 27 27 H 1.09007 * 109.46929 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47573 * 300.00154 * 1 2 3 29 29 H 1.09002 * 109.47331 * 60.00694 * 1 2 3 30 30 H 1.09007 * 110.48044 * 261.59356 * 5 3 2 31 31 H 1.08994 * 110.49113 * 24.10202 * 5 3 2 32 32 H 1.08997 * 110.90175 * 203.79461 * 6 5 3 33 33 H 1.09001 * 110.76744 * 80.30998 * 6 5 3 34 34 H 1.08007 * 119.94715 * 0.02562 * 13 12 10 35 35 H 1.08002 * 120.05332 * 180.22828 * 14 13 12 36 36 H 0.97000 * 120.00271 * 179.97438 * 19 18 16 37 37 H 1.07994 * 120.04939 * 180.02562 * 24 15 14 38 38 H 1.08005 * 119.94360 * 179.97438 * 25 24 15 39 39 H 1.09001 * 110.03327 * 121.38017 * 26 3 2 40 40 H 1.09009 * 110.03093 * 359.95540 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3405 2.0120 -0.4905 5 6 2.2903 1.7603 1.4472 6 6 3.6276 2.5425 1.3494 7 6 4.4263 1.7168 0.3104 8 1 4.8817 0.8467 0.7834 9 8 5.4421 2.5403 -0.3208 10 6 6.6733 2.5208 0.2272 11 8 6.8920 1.8340 1.2054 12 6 7.7554 3.3322 -0.3613 13 6 7.5027 4.1179 -1.4929 14 6 8.4984 4.8731 -2.0371 15 6 9.7862 4.8542 -1.4659 16 6 10.8216 5.6297 -2.0292 17 1 11.8524 5.3437 -1.8809 18 6 10.5122 6.7719 -2.7818 19 7 9.3305 7.3199 -2.6815 20 14 11.7896 7.5096 -3.9279 21 1 11.6629 6.8929 -5.2728 22 1 11.5730 8.9750 -4.0328 23 1 13.1482 7.2474 -3.3890 24 6 10.0372 4.0582 -0.3306 25 6 9.0342 3.3100 0.2097 26 6 3.3683 1.2778 -0.7227 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 1.4926 2.4122 1.8034 31 1 2.3984 0.8974 2.1042 32 1 4.1418 2.5554 2.3103 33 1 3.4567 3.5565 0.9878 34 1 6.5162 4.1287 -1.9325 35 1 8.3016 5.4815 -2.9075 36 1 9.1166 8.1101 -3.2018 37 1 11.0227 4.0411 0.1107 38 1 9.2258 2.6993 1.0797 39 1 3.3578 1.9708 -1.5640 40 1 3.5845 0.2683 -1.0728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282579152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:04 Heat of formation + Delta-G solvation = -131.630948 kcal Electronic energy + Delta-G solvation = -22212.533262 eV Core-core repulsion = 18763.262171 eV Total energy + Delta-G solvation = -3449.271090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90700 -38.76351 -37.46114 -36.17571 -34.61824 -33.94555 -30.36905 -29.50877 -28.91748 -27.90580 -26.31874 -25.85336 -22.63359 -21.03439 -20.85977 -20.41637 -19.83800 -17.56817 -17.32951 -16.69482 -16.44828 -15.72693 -15.35760 -15.11480 -14.89763 -14.14132 -13.98760 -13.89927 -13.39456 -13.02340 -12.91715 -12.51409 -12.27996 -12.12094 -11.96979 -11.84697 -11.59839 -11.42168 -11.35842 -11.32800 -11.00183 -10.79749 -10.70161 -10.56371 -10.13122 -10.01128 -9.74289 -9.60573 -9.43182 -9.35514 -7.75868 -7.64236 -7.10157 -4.68162 2.06258 2.86584 2.92469 2.95289 3.02663 3.33414 3.61458 3.65024 3.70341 4.40849 4.43007 4.52276 4.95041 5.04992 5.08853 5.18904 5.29658 5.34506 5.39963 5.43002 5.51482 5.57056 5.72451 5.86821 5.89517 6.00764 6.13692 6.19173 6.25428 6.31968 6.74153 6.79437 6.98779 7.02105 7.06562 7.17541 7.41118 7.67474 7.78292 7.83490 8.00333 8.34996 8.56131 8.69161 8.77765 9.81135 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032257 B = 0.002901 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.811350 B = 9649.216258 C =10173.862975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.087 3.913 4 H 0.070 0.930 5 C -0.143 4.143 6 C -0.138 4.138 7 C 0.086 3.914 8 H 0.089 0.911 9 O -0.352 6.352 10 C 0.515 3.485 11 O -0.552 6.552 12 C -0.274 4.274 13 C -0.042 4.042 14 C -0.185 4.185 15 C 0.131 3.869 16 C -0.435 4.435 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.764 5.764 20 Si 0.916 3.084 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.240 4.240 25 C -0.018 4.018 26 C -0.120 4.120 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.289 0.711 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.725 -5.317 1.029 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.029 3.971 4 H 0.088 0.912 5 C -0.181 4.181 6 C -0.175 4.175 7 C 0.030 3.970 8 H 0.107 0.893 9 O -0.270 6.270 10 C 0.367 3.633 11 O -0.446 6.446 12 C -0.277 4.277 13 C -0.061 4.061 14 C -0.204 4.204 15 C 0.128 3.872 16 C -0.462 4.462 17 H 0.105 0.895 18 C -0.150 4.150 19 N -0.387 5.387 20 Si 0.739 3.261 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.259 4.259 25 C -0.037 4.037 26 C -0.157 4.157 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.734 -5.474 1.225 13.915 hybrid contribution 0.168 0.615 -0.324 0.715 sum -12.566 -4.859 0.900 13.503 Atomic orbital electron populations 1.22771 0.81321 1.02623 0.99905 1.87960 1.19470 1.27860 1.94971 1.22733 0.94477 0.84332 0.95527 0.91239 1.22875 0.97524 1.00529 0.97137 1.22903 0.95128 0.99663 0.99835 1.23328 0.86791 0.93907 0.92975 0.89276 1.86648 1.20229 1.63669 1.56459 1.21581 0.81236 0.79476 0.81018 1.90682 1.82965 1.43214 1.27738 1.18230 0.92053 1.11760 1.05639 1.20640 0.97912 0.93868 0.93717 1.21012 0.93666 1.03081 1.02674 1.17852 0.92733 0.88367 0.88273 1.19931 0.95136 1.06123 1.25027 0.89471 1.26159 0.96452 0.96568 0.95780 1.69744 1.21240 1.16397 1.31304 0.86165 0.81183 0.78229 0.80484 1.18815 1.19928 1.18199 1.20687 0.98374 1.06609 1.00223 1.20353 0.91376 0.95226 0.96721 1.22249 0.91868 1.03290 0.98330 0.89767 0.94108 0.94046 0.91109 0.90186 0.90492 0.90152 0.88059 0.86047 0.90012 0.88075 0.87968 0.89273 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.34 16 2 O -0.38 -4.41 10.26 -35.23 -0.36 -4.77 16 3 C 0.09 0.96 3.39 -25.61 -0.09 0.88 16 4 H 0.07 0.66 7.80 -51.93 -0.41 0.25 16 5 C -0.14 -1.56 6.57 -24.88 -0.16 -1.72 16 6 C -0.14 -1.87 6.66 -24.55 -0.16 -2.03 16 7 C 0.09 1.36 3.19 -25.07 -0.08 1.28 16 8 H 0.09 1.52 7.20 -51.93 -0.37 1.15 16 9 O -0.35 -6.84 9.17 -40.71 -0.37 -7.22 16 10 C 0.51 11.50 7.89 34.51 0.27 11.78 16 11 O -0.55 -13.05 15.60 -19.27 -0.30 -13.35 16 12 C -0.27 -6.49 5.89 -104.75 -0.62 -7.11 16 13 C -0.04 -0.99 9.55 -39.60 -0.38 -1.37 16 14 C -0.19 -4.60 8.63 -39.27 -0.34 -4.94 16 15 C 0.13 3.32 5.58 -106.80 -0.60 2.73 16 16 C -0.44 -10.65 9.04 -37.74 -0.34 -10.99 16 17 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 19 N -0.76 -18.10 10.95 55.56 0.61 -17.49 16 20 Si 0.92 16.94 29.60 -169.99 -5.03 11.91 16 21 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 22 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 24 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16 25 C -0.02 -0.43 9.52 -39.60 -0.38 -0.80 16 26 C -0.12 -1.55 6.38 -25.62 -0.16 -1.71 16 27 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.28 8.10 -51.93 -0.42 -0.14 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.10 2.16 7.59 -52.48 -0.40 1.77 16 35 H 0.12 3.04 6.16 -52.49 -0.32 2.71 16 36 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 37 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 38 H 0.10 2.29 7.63 -52.48 -0.40 1.89 16 39 H 0.09 1.11 8.07 -51.93 -0.42 0.69 16 40 H 0.09 1.11 7.96 -51.92 -0.41 0.69 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -27.74 338.44 -8.42 -36.17 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.66 Total: 6.89 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -2.41 Total: -17.24 kcal Atomic # 7 Polarization: -18.10 SS G_CDS: 0.61 Total: -17.49 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -1.04 Total: -25.34 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.74 -8.42 -36.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282579152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.465 kcal (2) G-P(sol) polarization free energy of solvation -27.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds