Wall clock time and date at job start Tue Mar 31 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 113.99705 * 2 1 4 4 H 1.09000 * 110.01993 * 331.38545 * 3 2 1 5 5 C 1.54268 * 110.07419 * 92.81031 * 3 2 1 6 6 C 1.55235 * 104.23657 * 142.91743 * 5 3 2 7 7 C 1.54894 * 102.58295 * 322.08408 * 6 5 3 8 8 H 1.09002 * 110.48348 * 279.18468 * 7 6 5 9 9 O 1.45202 * 110.48502 * 156.67894 * 7 6 5 10 10 C 1.34779 * 117.00306 * 93.23880 * 9 7 6 11 11 O 1.21507 * 119.99662 * 0.02562 * 10 9 7 12 12 C 1.47509 * 119.99969 * 179.97438 * 10 9 7 13 13 C 1.40062 * 119.90198 * 359.73051 * 12 10 9 14 14 C 1.36299 * 120.10126 * 179.75824 * 13 12 10 15 15 C 1.40895 * 119.89412 * 0.51161 * 14 13 12 16 16 C 1.41097 * 120.09768 * 179.71835 * 15 14 13 17 17 H 1.07997 * 120.00421 * 204.66172 * 16 15 14 18 18 C 1.40244 * 120.00039 * 24.66212 * 16 15 14 19 19 N 1.30639 * 120.00071 * 17.85838 * 18 16 15 20 20 Si 1.86801 * 120.00166 * 197.86422 * 18 16 15 21 21 H 1.48501 * 109.46805 * 89.99804 * 20 18 16 22 22 H 1.48501 * 109.47196 * 209.99785 * 20 18 16 23 23 H 1.48493 * 109.47005 * 329.99595 * 20 18 16 24 24 C 1.40905 * 119.80730 * 359.73708 * 15 14 13 25 25 C 1.36297 * 119.89120 * 0.02562 * 24 15 14 26 26 C 1.53874 * 110.03186 * 209.99452 * 3 2 1 27 27 H 1.09007 * 109.46929 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47573 * 300.00154 * 1 2 3 29 29 H 1.09002 * 109.47331 * 60.00694 * 1 2 3 30 30 H 1.09007 * 110.48044 * 261.59356 * 5 3 2 31 31 H 1.08994 * 110.49113 * 24.10202 * 5 3 2 32 32 H 1.08997 * 110.90175 * 203.79461 * 6 5 3 33 33 H 1.09001 * 110.76744 * 80.30998 * 6 5 3 34 34 H 1.08007 * 119.94715 * 0.02562 * 13 12 10 35 35 H 1.08002 * 120.05332 * 180.22828 * 14 13 12 36 36 H 0.97000 * 120.00271 * 179.97438 * 19 18 16 37 37 H 1.07994 * 120.04939 * 180.02562 * 24 15 14 38 38 H 1.08005 * 119.94360 * 179.97438 * 25 24 15 39 39 H 1.09001 * 110.03327 * 121.38017 * 26 3 2 40 40 H 1.09009 * 110.03093 * 359.95540 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3405 2.0120 -0.4905 5 6 2.2903 1.7603 1.4472 6 6 3.6276 2.5425 1.3494 7 6 4.4263 1.7168 0.3104 8 1 4.8817 0.8467 0.7834 9 8 5.4421 2.5403 -0.3208 10 6 6.6733 2.5208 0.2272 11 8 6.8920 1.8340 1.2054 12 6 7.7554 3.3322 -0.3613 13 6 7.5027 4.1179 -1.4929 14 6 8.4984 4.8731 -2.0371 15 6 9.7862 4.8542 -1.4659 16 6 10.8216 5.6297 -2.0292 17 1 11.8524 5.3437 -1.8809 18 6 10.5122 6.7719 -2.7818 19 7 9.3305 7.3199 -2.6815 20 14 11.7896 7.5096 -3.9279 21 1 11.6629 6.8929 -5.2728 22 1 11.5730 8.9750 -4.0328 23 1 13.1482 7.2474 -3.3890 24 6 10.0372 4.0582 -0.3306 25 6 9.0342 3.3100 0.2097 26 6 3.3683 1.2778 -0.7227 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 1.4926 2.4122 1.8034 31 1 2.3984 0.8974 2.1042 32 1 4.1418 2.5554 2.3103 33 1 3.4567 3.5565 0.9878 34 1 6.5162 4.1287 -1.9325 35 1 8.3016 5.4815 -2.9075 36 1 9.1166 8.1101 -3.2018 37 1 11.0227 4.0411 0.1107 38 1 9.2258 2.6993 1.0797 39 1 3.3578 1.9708 -1.5640 40 1 3.5845 0.2683 -1.0728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282579152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:03 Heat of formation + Delta-G solvation = -144.652786 kcal Electronic energy + Delta-G solvation = -22213.097931 eV Core-core repulsion = 18763.262171 eV Total energy + Delta-G solvation = -3449.835760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.43175 -39.91706 -39.15521 -37.56697 -35.90670 -35.73545 -32.19555 -31.37961 -29.90919 -29.01567 -27.77496 -26.86107 -24.33927 -22.85117 -22.16261 -21.59233 -21.30982 -19.40637 -18.82343 -17.94560 -17.69251 -17.19478 -16.88297 -16.31840 -15.88484 -15.77512 -15.36316 -15.13929 -14.85698 -14.57928 -14.29739 -14.00570 -13.78883 -13.46549 -13.42625 -13.10860 -13.00859 -12.87460 -12.66486 -12.45493 -12.39633 -12.30294 -11.85611 -11.81371 -11.57127 -11.42516 -11.36906 -11.22753 -11.12040 -10.54184 -9.63717 -9.53543 -8.84939 -6.55397 0.24182 1.13106 1.37178 1.42065 1.54807 1.86739 1.89465 2.15362 2.67658 2.81838 3.40673 3.45951 3.62802 3.93034 4.02623 4.16727 4.28760 4.35284 4.37057 4.41130 4.46594 4.50604 4.60427 4.64162 4.77678 4.88863 4.90512 4.91980 4.94028 4.99163 5.06692 5.11628 5.13921 5.23428 5.54409 5.56019 5.82243 5.91341 5.96294 6.14790 6.28016 6.48944 6.70054 6.81888 7.03956 8.09874 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032257 B = 0.002901 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.811350 B = 9649.216258 C =10173.862975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.406 6.406 3 C 0.092 3.908 4 H 0.093 0.907 5 C -0.133 4.133 6 C -0.136 4.136 7 C 0.073 3.927 8 H 0.071 0.929 9 O -0.353 6.353 10 C 0.519 3.481 11 O -0.571 6.571 12 C -0.292 4.292 13 C -0.038 4.038 14 C -0.203 4.203 15 C 0.104 3.896 16 C -0.458 4.458 17 H 0.093 0.907 18 C 0.035 3.965 19 N -0.790 5.790 20 Si 0.992 3.008 21 H -0.259 1.259 22 H -0.264 1.264 23 H -0.254 1.254 24 C -0.251 4.251 25 C -0.024 4.024 26 C -0.116 4.116 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.300 0.700 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 -4.719 0.287 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C 0.034 3.966 4 H 0.111 0.889 5 C -0.170 4.170 6 C -0.174 4.174 7 C 0.018 3.982 8 H 0.089 0.911 9 O -0.270 6.270 10 C 0.371 3.629 11 O -0.466 6.466 12 C -0.294 4.294 13 C -0.057 4.057 14 C -0.222 4.222 15 C 0.101 3.899 16 C -0.485 4.485 17 H 0.111 0.889 18 C -0.185 4.185 19 N -0.413 5.413 20 Si 0.811 3.189 21 H -0.183 1.183 22 H -0.189 1.189 23 H -0.178 1.178 24 C -0.270 4.270 25 C -0.042 4.042 26 C -0.153 4.153 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.857 -4.887 0.491 14.702 hybrid contribution 0.422 0.401 -0.070 0.586 sum -13.435 -4.486 0.421 14.171 Atomic orbital electron populations 1.22993 0.79409 1.03833 1.01056 1.87930 1.21598 1.27961 1.95077 1.22689 0.93678 0.84944 0.95270 0.88924 1.22840 0.96502 1.00407 0.97295 1.22890 0.96189 0.99947 0.98337 1.23713 0.86491 0.93321 0.94657 0.91090 1.86607 1.19717 1.64157 1.56519 1.21357 0.81987 0.78912 0.80616 1.90661 1.83556 1.43928 1.28495 1.18463 0.92733 1.12247 1.05972 1.20772 0.98352 0.93144 0.93447 1.21023 0.94181 1.03981 1.03021 1.18203 0.93418 0.89272 0.89003 1.20250 0.95273 1.06895 1.26044 0.88913 1.27046 0.98552 0.96340 0.96568 1.69764 1.22877 1.16939 1.31718 0.85039 0.78247 0.77640 0.77961 1.18318 1.18862 1.17786 1.20866 0.99139 1.06752 1.00218 1.20506 0.91543 0.95215 0.96957 1.22254 0.92156 1.03052 0.97880 0.88686 0.92925 0.92868 0.88448 0.90579 0.91736 0.89731 0.86397 0.86695 0.88869 0.86833 0.87219 0.88685 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.53 16 2 O -0.41 -8.49 10.26 -148.98 -1.53 -10.02 16 3 C 0.09 1.82 3.39 31.32 0.11 1.93 16 4 H 0.09 1.43 7.80 -2.39 -0.02 1.41 16 5 C -0.13 -2.61 6.57 31.79 0.21 -2.41 16 6 C -0.14 -3.58 6.66 32.01 0.21 -3.37 16 7 C 0.07 2.31 3.19 31.67 0.10 2.41 16 8 H 0.07 2.49 7.20 -2.39 -0.02 2.47 16 9 O -0.35 -13.75 9.17 -56.90 -0.52 -14.27 16 10 C 0.52 23.51 7.89 70.27 0.55 24.07 16 11 O -0.57 -27.47 15.60 19.81 0.31 -27.16 16 12 C -0.29 -14.02 5.89 -19.95 -0.12 -14.14 16 13 C -0.04 -1.82 9.55 22.26 0.21 -1.61 16 14 C -0.20 -10.26 8.63 22.47 0.19 -10.07 16 15 C 0.10 5.39 5.58 -21.27 -0.12 5.27 16 16 C -0.46 -22.54 9.04 23.46 0.21 -22.33 16 17 H 0.09 4.31 7.91 -2.91 -0.02 4.28 16 18 C 0.04 1.60 5.14 85.36 0.44 2.03 16 19 N -0.79 -37.26 10.95 21.88 0.24 -37.02 16 20 Si 0.99 33.71 29.60 68.60 2.03 35.74 16 21 H -0.26 -8.57 7.11 99.48 0.71 -7.87 16 22 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 23 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 24 C -0.25 -12.24 9.73 22.47 0.22 -12.02 16 25 C -0.02 -1.14 9.52 22.26 0.21 -0.92 16 26 C -0.12 -2.87 6.38 31.32 0.20 -2.67 16 27 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.57 8.10 -2.39 -0.02 0.55 16 30 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.08 1.57 8.08 -2.39 -0.02 1.56 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 34 H 0.12 5.04 7.59 -2.91 -0.02 5.02 16 35 H 0.12 5.87 6.16 -2.91 -0.02 5.85 16 36 H 0.30 12.49 8.29 -92.71 -0.77 11.72 16 37 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 38 H 0.11 5.00 7.63 -2.91 -0.02 4.98 16 39 H 0.09 2.23 8.07 -2.39 -0.02 2.21 16 40 H 0.08 2.08 7.96 -2.38 -0.02 2.06 16 Total: -1.00 -59.75 338.44 5.43 -54.32 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 1.03 Total: 30.70 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 3.86 Total: -32.30 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.24 Total: -37.02 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -1.74 Total: -51.44 kcal Atomic # 14 Polarization: 33.71 SS G_CDS: 2.03 Total: 35.74 kcal Total: -59.75 5.43 -54.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282579152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.332 kcal (2) G-P(sol) polarization free energy of solvation -59.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds