Wall clock time and date at job start Tue Mar 31 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00341 * 2 1 4 4 H 1.09002 * 110.67235 * 31.77174 * 3 2 1 5 5 C 1.54898 * 110.75122 * 268.54383 * 3 2 1 6 6 C 1.54260 * 104.19183 * 203.74000 * 5 3 2 7 7 C 1.53871 * 106.60414 * 23.61265 * 6 5 3 8 8 H 1.09002 * 110.03298 * 240.67101 * 7 6 5 9 9 O 1.45192 * 110.03488 * 119.27972 * 7 6 5 10 10 C 1.34775 * 116.99943 * 91.45727 * 9 7 6 11 11 O 1.21506 * 120.00014 * 0.02562 * 10 9 7 12 12 C 1.47509 * 120.00295 * 179.97438 * 10 9 7 13 13 C 1.40068 * 119.90391 * 179.97438 * 12 10 9 14 14 C 1.36299 * 120.10462 * 179.97438 * 13 12 10 15 15 C 1.40899 * 119.89458 * 0.02562 * 14 13 12 16 16 C 1.41091 * 120.09732 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99930 * 155.31328 * 16 15 14 18 18 C 1.40247 * 120.00054 * 335.04270 * 16 15 14 19 19 N 1.30631 * 120.00000 * 342.53262 * 18 16 15 20 20 Si 1.86798 * 119.99950 * 162.53216 * 18 16 15 21 21 H 1.48502 * 109.47424 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47318 * 120.00094 * 20 18 16 23 23 H 1.48509 * 109.47194 * 240.00150 * 20 18 16 24 24 C 1.40900 * 119.80432 * 0.27355 * 15 14 13 25 25 C 1.36302 * 119.89810 * 359.40049 * 24 15 14 26 26 C 1.54268 * 106.59446 * 359.97438 * 7 6 5 27 27 H 1.09000 * 109.47625 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47126 * 300.00476 * 1 2 3 29 29 H 1.08998 * 109.47208 * 60.00521 * 1 2 3 30 30 H 1.09000 * 110.48475 * 85.06214 * 5 3 2 31 31 H 1.08994 * 110.48869 * 322.41923 * 5 3 2 32 32 H 1.09000 * 110.03705 * 264.32580 * 6 5 3 33 33 H 1.09000 * 110.07270 * 142.92134 * 6 5 3 34 34 H 1.08001 * 119.94883 * 0.02562 * 13 12 10 35 35 H 1.07991 * 120.05219 * 180.02562 * 14 13 12 36 36 H 0.96994 * 120.00164 * 180.02562 * 19 18 16 37 37 H 1.08005 * 120.05257 * 179.72730 * 24 15 14 38 38 H 1.08000 * 119.95398 * 180.31902 * 25 24 15 39 39 H 1.09001 * 110.48512 * 95.07300 * 26 7 6 40 40 H 1.09006 * 110.48643 * 217.71463 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3748 2.0096 0.5370 5 6 2.2672 1.7918 -1.4480 6 6 3.3892 2.8402 -1.3014 7 6 4.1317 2.5098 0.0052 8 1 4.0638 3.3501 0.6961 9 8 5.5239 2.2089 -0.2762 10 6 6.3937 3.2374 -0.2297 11 8 5.9994 4.3548 0.0391 12 6 7.8245 3.0064 -0.5041 13 6 8.7265 4.0769 -0.4558 14 6 10.0495 3.8680 -0.7081 15 6 10.5093 2.5728 -1.0184 16 6 11.8780 2.3516 -1.2798 17 1 12.3059 1.3720 -1.1254 18 6 12.6818 3.4023 -1.7455 19 7 12.1295 4.4691 -2.2587 20 14 14.5420 3.2763 -1.6320 21 1 14.9135 1.9775 -1.0154 22 1 15.1282 3.3641 -2.9936 23 1 15.0634 4.3876 -0.7961 24 6 9.5973 1.5001 -1.0722 25 6 8.2771 1.7170 -0.8119 26 6 3.4344 1.2724 0.6074 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.3687 2.2499 -1.8616 31 1 2.5979 0.9642 -2.0754 32 1 2.9604 3.8407 -1.2443 33 1 4.0743 2.7756 -2.1467 34 1 8.3732 5.0692 -0.2173 35 1 10.7443 4.6938 -0.6701 36 1 12.6853 5.1957 -2.5811 37 1 9.9447 0.5064 -1.3140 38 1 7.5781 0.8945 -0.8478 39 1 3.9535 0.3606 0.3120 40 1 3.3882 1.3514 1.6936 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282579157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:06 Heat of formation + Delta-G solvation = -131.155481 kcal Electronic energy + Delta-G solvation = -22194.805255 eV Core-core repulsion = 18745.554782 eV Total energy + Delta-G solvation = -3449.250473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.95131 -38.71751 -37.46754 -36.23440 -34.62493 -33.95219 -30.28689 -29.60065 -28.94628 -27.93145 -26.31277 -25.82394 -22.59970 -21.20776 -20.97496 -20.34532 -19.59795 -17.61143 -17.33330 -16.80768 -16.33279 -15.77437 -15.39793 -15.09248 -14.91015 -14.39159 -14.06330 -13.69170 -13.39547 -13.17625 -12.83279 -12.35186 -12.22601 -12.12265 -12.08494 -11.85568 -11.62642 -11.48212 -11.37433 -11.27998 -11.00213 -10.85851 -10.68711 -10.48895 -10.13113 -10.04244 -9.73441 -9.58773 -9.42595 -9.39244 -7.75061 -7.63772 -7.09239 -4.67701 2.06055 2.85429 2.92869 2.98422 3.03023 3.21346 3.63247 3.70638 3.73892 4.38332 4.48766 4.52035 4.78261 5.02055 5.07328 5.17205 5.30824 5.34485 5.39331 5.42851 5.51746 5.53394 5.72153 5.82808 5.89814 6.03463 6.12216 6.17496 6.25522 6.32727 6.74613 6.81521 7.00421 7.00726 7.06021 7.17627 7.41463 7.61822 7.79216 7.87148 8.01112 8.36248 8.56621 8.69155 8.77111 9.82074 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043441 B = 0.002768 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.403268 B =10112.968051 C =10440.060481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.084 3.916 4 H 0.072 0.928 5 C -0.142 4.142 6 C -0.138 4.138 7 C 0.087 3.913 8 H 0.086 0.914 9 O -0.353 6.353 10 C 0.513 3.487 11 O -0.551 6.551 12 C -0.274 4.274 13 C -0.033 4.033 14 C -0.185 4.185 15 C 0.131 3.869 16 C -0.435 4.435 17 H 0.088 0.912 18 C 0.072 3.928 19 N -0.764 5.764 20 Si 0.915 3.085 21 H -0.256 1.256 22 H -0.271 1.271 23 H -0.268 1.268 24 C -0.240 4.240 25 C -0.028 4.028 26 C -0.115 4.115 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.288 0.712 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 -4.272 2.150 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.026 3.974 4 H 0.090 0.910 5 C -0.180 4.180 6 C -0.176 4.176 7 C 0.031 3.969 8 H 0.104 0.896 9 O -0.271 6.271 10 C 0.366 3.634 11 O -0.445 6.445 12 C -0.277 4.277 13 C -0.052 4.052 14 C -0.204 4.204 15 C 0.128 3.872 16 C -0.462 4.462 17 H 0.106 0.894 18 C -0.150 4.150 19 N -0.387 5.387 20 Si 0.739 3.261 21 H -0.180 1.180 22 H -0.196 1.196 23 H -0.193 1.193 24 C -0.259 4.259 25 C -0.046 4.046 26 C -0.153 4.153 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.894 -3.899 2.102 14.583 hybrid contribution 0.441 0.444 -0.113 0.635 sum -13.453 -3.456 1.988 14.032 Atomic orbital electron populations 1.22772 0.81229 1.02680 0.99909 1.87921 1.19498 1.27439 1.94918 1.23081 0.94158 0.84395 0.95781 0.91045 1.22822 0.98512 0.99297 0.97397 1.22501 0.97642 0.98999 0.98435 1.23027 0.79214 0.97804 0.96821 0.89579 1.86691 1.18008 1.40031 1.82325 1.21606 0.87237 0.81780 0.72825 1.90682 1.79899 1.24738 1.49147 1.18242 0.87631 0.95786 1.26037 1.20459 0.93077 0.96169 0.95479 1.20982 0.94187 0.98312 1.06885 1.17854 0.92770 0.91477 0.85138 1.19951 0.93567 0.97207 1.35451 0.89437 1.26167 1.02417 0.94190 0.92251 1.69745 1.39069 1.05779 1.24080 0.86131 0.80771 0.80114 0.79128 1.17965 1.19578 1.19278 1.20731 0.92890 0.98807 1.13469 1.20555 0.95463 0.94554 0.94053 1.22399 0.93535 0.99233 1.00109 0.89674 0.94088 0.94070 0.91474 0.90163 0.90780 0.90123 0.88075 0.85933 0.90033 0.88206 0.87931 0.88761 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.88 101.05 1.10 1.34 16 2 O -0.38 -4.32 10.49 -35.23 -0.37 -4.69 16 3 C 0.08 0.91 3.35 -24.75 -0.08 0.83 16 4 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 5 C -0.14 -1.57 6.55 -25.07 -0.16 -1.74 16 6 C -0.14 -1.85 6.62 -25.62 -0.17 -2.02 16 7 C 0.09 1.33 3.23 -25.61 -0.08 1.25 16 8 H 0.09 1.37 7.19 -51.93 -0.37 0.99 16 9 O -0.35 -6.75 9.02 -40.70 -0.37 -7.12 16 10 C 0.51 11.40 7.88 34.51 0.27 11.67 16 11 O -0.55 -12.99 15.60 -19.27 -0.30 -13.29 16 12 C -0.27 -6.50 5.89 -104.75 -0.62 -7.11 16 13 C -0.03 -0.81 9.52 -39.59 -0.38 -1.18 16 14 C -0.18 -4.69 8.63 -39.27 -0.34 -5.03 16 15 C 0.13 3.33 5.57 -106.80 -0.60 2.73 16 16 C -0.43 -10.67 9.04 -37.75 -0.34 -11.01 16 17 H 0.09 2.03 7.91 -52.48 -0.42 1.62 16 18 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 19 N -0.76 -18.36 10.95 55.56 0.61 -17.75 16 20 Si 0.92 17.05 29.60 -169.99 -5.03 12.02 16 21 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 22 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 23 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 24 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 25 C -0.03 -0.62 9.55 -39.59 -0.38 -1.00 16 26 C -0.12 -1.46 6.29 -25.09 -0.16 -1.62 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.27 8.11 -51.93 -0.42 -0.15 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.20 7.96 -51.93 -0.41 0.79 16 34 H 0.10 2.40 7.63 -52.49 -0.40 2.00 16 35 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 36 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 37 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 38 H 0.10 2.08 7.59 -52.49 -0.40 1.68 16 39 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -27.93 338.57 -8.43 -36.36 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.67 Total: 6.71 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -2.40 Total: -17.34 kcal Atomic # 7 Polarization: -18.36 SS G_CDS: 0.61 Total: -17.75 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -1.04 Total: -25.10 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.93 -8.43 -36.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282579157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.800 kcal (2) G-P(sol) polarization free energy of solvation -27.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds