Wall clock time and date at job start Tue Mar 31 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00341 * 2 1 4 4 H 1.09002 * 110.67235 * 31.77174 * 3 2 1 5 5 C 1.54898 * 110.75122 * 268.54383 * 3 2 1 6 6 C 1.54260 * 104.19183 * 203.74000 * 5 3 2 7 7 C 1.53871 * 106.60414 * 23.61265 * 6 5 3 8 8 H 1.09002 * 110.03298 * 240.67101 * 7 6 5 9 9 O 1.45192 * 110.03488 * 119.27972 * 7 6 5 10 10 C 1.34775 * 116.99943 * 91.45727 * 9 7 6 11 11 O 1.21506 * 120.00014 * 0.02562 * 10 9 7 12 12 C 1.47509 * 120.00295 * 179.97438 * 10 9 7 13 13 C 1.40068 * 119.90391 * 179.97438 * 12 10 9 14 14 C 1.36299 * 120.10462 * 179.97438 * 13 12 10 15 15 C 1.40899 * 119.89458 * 0.02562 * 14 13 12 16 16 C 1.41091 * 120.09732 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99930 * 155.31328 * 16 15 14 18 18 C 1.40247 * 120.00054 * 335.04270 * 16 15 14 19 19 N 1.30631 * 120.00000 * 342.53262 * 18 16 15 20 20 Si 1.86798 * 119.99950 * 162.53216 * 18 16 15 21 21 H 1.48502 * 109.47424 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47318 * 120.00094 * 20 18 16 23 23 H 1.48509 * 109.47194 * 240.00150 * 20 18 16 24 24 C 1.40900 * 119.80432 * 0.27355 * 15 14 13 25 25 C 1.36302 * 119.89810 * 359.40049 * 24 15 14 26 26 C 1.54268 * 106.59446 * 359.97438 * 7 6 5 27 27 H 1.09000 * 109.47625 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47126 * 300.00476 * 1 2 3 29 29 H 1.08998 * 109.47208 * 60.00521 * 1 2 3 30 30 H 1.09000 * 110.48475 * 85.06214 * 5 3 2 31 31 H 1.08994 * 110.48869 * 322.41923 * 5 3 2 32 32 H 1.09000 * 110.03705 * 264.32580 * 6 5 3 33 33 H 1.09000 * 110.07270 * 142.92134 * 6 5 3 34 34 H 1.08001 * 119.94883 * 0.02562 * 13 12 10 35 35 H 1.07991 * 120.05219 * 180.02562 * 14 13 12 36 36 H 0.96994 * 120.00164 * 180.02562 * 19 18 16 37 37 H 1.08005 * 120.05257 * 179.72730 * 24 15 14 38 38 H 1.08000 * 119.95398 * 180.31902 * 25 24 15 39 39 H 1.09001 * 110.48512 * 95.07300 * 26 7 6 40 40 H 1.09006 * 110.48643 * 217.71463 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3748 2.0096 0.5370 5 6 2.2672 1.7918 -1.4480 6 6 3.3892 2.8402 -1.3014 7 6 4.1317 2.5098 0.0052 8 1 4.0638 3.3501 0.6961 9 8 5.5239 2.2089 -0.2762 10 6 6.3937 3.2374 -0.2297 11 8 5.9994 4.3548 0.0391 12 6 7.8245 3.0064 -0.5041 13 6 8.7265 4.0769 -0.4558 14 6 10.0495 3.8680 -0.7081 15 6 10.5093 2.5728 -1.0184 16 6 11.8780 2.3516 -1.2798 17 1 12.3059 1.3720 -1.1254 18 6 12.6818 3.4023 -1.7455 19 7 12.1295 4.4691 -2.2587 20 14 14.5420 3.2763 -1.6320 21 1 14.9135 1.9775 -1.0154 22 1 15.1282 3.3641 -2.9936 23 1 15.0634 4.3876 -0.7961 24 6 9.5973 1.5001 -1.0722 25 6 8.2771 1.7170 -0.8119 26 6 3.4344 1.2724 0.6074 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.3687 2.2499 -1.8616 31 1 2.5979 0.9642 -2.0754 32 1 2.9604 3.8407 -1.2443 33 1 4.0743 2.7756 -2.1467 34 1 8.3732 5.0692 -0.2173 35 1 10.7443 4.6938 -0.6701 36 1 12.6853 5.1957 -2.5811 37 1 9.9447 0.5064 -1.3140 38 1 7.5781 0.8945 -0.8478 39 1 3.9535 0.3606 0.3120 40 1 3.3882 1.3514 1.6936 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282579157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:06 Heat of formation + Delta-G solvation = -144.457697 kcal Electronic energy + Delta-G solvation = -22195.382082 eV Core-core repulsion = 18745.554782 eV Total energy + Delta-G solvation = -3449.827300 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46319 -39.87612 -39.14288 -37.59586 -35.93141 -35.73921 -32.12749 -31.46788 -29.92737 -29.01779 -27.79640 -26.81304 -24.30897 -23.01383 -22.04812 -21.76879 -21.03792 -19.42671 -18.83638 -18.08890 -17.41653 -17.22086 -17.02795 -16.33610 -15.81776 -15.76445 -15.48253 -15.16342 -15.01404 -14.50340 -14.19565 -14.05225 -13.71033 -13.62032 -13.31462 -13.16185 -12.97195 -12.82231 -12.67684 -12.47973 -12.39851 -12.29492 -11.85507 -11.79873 -11.56450 -11.43846 -11.38213 -11.19762 -11.16256 -10.51794 -9.64573 -9.53045 -8.85431 -6.55878 0.23738 1.13044 1.35361 1.40777 1.56435 1.83905 1.88700 2.14578 2.67291 2.81926 3.41357 3.52106 3.62372 3.85047 4.04739 4.17421 4.27931 4.34022 4.36164 4.41356 4.45024 4.51949 4.57466 4.62096 4.79727 4.89443 4.90732 4.93431 4.94728 4.98748 5.10571 5.14511 5.17771 5.20527 5.54120 5.55416 5.78340 5.92566 5.97677 6.14343 6.27220 6.48741 6.69595 6.81516 7.04455 8.09522 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043441 B = 0.002768 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.403268 B =10112.968051 C =10440.060481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.090 3.910 4 H 0.094 0.906 5 C -0.134 4.134 6 C -0.137 4.137 7 C 0.076 3.924 8 H 0.080 0.920 9 O -0.353 6.353 10 C 0.519 3.481 11 O -0.570 6.570 12 C -0.292 4.292 13 C -0.041 4.041 14 C -0.202 4.202 15 C 0.104 3.896 16 C -0.457 4.457 17 H 0.096 0.904 18 C 0.033 3.967 19 N -0.795 5.795 20 Si 0.993 3.007 21 H -0.251 1.251 22 H -0.262 1.262 23 H -0.263 1.263 24 C -0.250 4.250 25 C -0.022 4.022 26 C -0.112 4.112 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.299 0.701 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.082 0.918 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.637 -5.202 2.185 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.033 3.967 4 H 0.112 0.888 5 C -0.172 4.172 6 C -0.175 4.175 7 C 0.021 3.979 8 H 0.098 0.902 9 O -0.271 6.271 10 C 0.371 3.629 11 O -0.465 6.465 12 C -0.294 4.294 13 C -0.060 4.060 14 C -0.221 4.221 15 C 0.101 3.899 16 C -0.484 4.484 17 H 0.114 0.886 18 C -0.187 4.187 19 N -0.417 5.417 20 Si 0.812 3.188 21 H -0.174 1.174 22 H -0.187 1.187 23 H -0.188 1.188 24 C -0.269 4.269 25 C -0.040 4.040 26 C -0.150 4.150 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.101 0.899 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.650 -4.848 2.134 15.578 hybrid contribution 0.552 0.720 -0.134 0.917 sum -14.097 -4.128 1.999 14.825 Atomic orbital electron populations 1.22999 0.79312 1.03917 1.01054 1.87890 1.21621 1.27483 1.95018 1.23024 0.93308 0.84970 0.95434 0.88835 1.22780 0.98399 0.98282 0.97754 1.22494 0.97948 1.00526 0.96527 1.23439 0.77268 0.99107 0.98039 0.90232 1.86650 1.19784 1.38837 1.81821 1.21331 0.87216 0.81955 0.72360 1.90659 1.80302 1.25574 1.50015 1.18472 0.88661 0.96038 1.26260 1.20529 0.93171 0.96606 0.95660 1.20947 0.94406 0.98427 1.08358 1.18206 0.93899 0.91903 0.85889 1.20283 0.93772 0.98346 1.35976 0.88601 1.27098 1.07243 0.93292 0.91082 1.69780 1.41306 1.06564 1.24094 0.84990 0.74200 0.80253 0.79394 1.17407 1.18685 1.18754 1.20960 0.93103 0.99223 1.13623 1.20758 0.95594 0.94789 0.92872 1.22402 0.94507 0.97175 1.00899 0.88541 0.92799 0.93023 0.89011 0.91006 0.89782 0.92014 0.88194 0.87037 0.88986 0.86489 0.85570 0.89922 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.88 113.37 1.23 1.53 16 2 O -0.40 -8.20 10.49 -148.98 -1.56 -9.77 16 3 C 0.09 1.76 3.35 31.88 0.11 1.87 16 4 H 0.09 1.42 7.88 -2.39 -0.02 1.40 16 5 C -0.13 -2.69 6.55 31.67 0.21 -2.48 16 6 C -0.14 -3.55 6.62 31.32 0.21 -3.34 16 7 C 0.08 2.28 3.23 31.32 0.10 2.38 16 8 H 0.08 2.49 7.19 -2.39 -0.02 2.47 16 9 O -0.35 -13.50 9.02 -56.86 -0.51 -14.01 16 10 C 0.52 23.29 7.88 70.27 0.55 23.84 16 11 O -0.57 -27.24 15.60 19.82 0.31 -26.93 16 12 C -0.29 -14.04 5.89 -19.94 -0.12 -14.16 16 13 C -0.04 -2.07 9.52 22.26 0.21 -1.85 16 14 C -0.20 -10.63 8.63 22.47 0.19 -10.43 16 15 C 0.10 5.41 5.57 -21.28 -0.12 5.29 16 16 C -0.46 -22.58 9.04 23.46 0.21 -22.37 16 17 H 0.10 4.42 7.91 -2.91 -0.02 4.40 16 18 C 0.03 1.51 5.14 85.36 0.44 1.94 16 19 N -0.79 -38.57 10.95 21.87 0.24 -38.33 16 20 Si 0.99 34.23 29.60 68.60 2.03 36.26 16 21 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 22 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 23 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 24 C -0.25 -11.82 9.73 22.47 0.22 -11.60 16 25 C -0.02 -0.98 9.55 22.26 0.21 -0.77 16 26 C -0.11 -2.69 6.29 31.66 0.20 -2.49 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.55 8.11 -2.39 -0.02 0.53 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 34 H 0.10 4.94 7.63 -2.91 -0.02 4.92 16 35 H 0.11 5.98 6.16 -2.92 -0.02 5.96 16 36 H 0.30 12.86 8.29 -92.71 -0.77 12.09 16 37 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 38 H 0.13 5.00 7.59 -2.91 -0.02 4.98 16 39 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 40 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -60.53 338.57 5.40 -55.13 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 1.03 Total: 30.31 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 3.86 Total: -32.65 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.24 Total: -38.33 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -1.77 Total: -50.71 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Total: -60.53 5.40 -55.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282579157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.329 kcal (2) G-P(sol) polarization free energy of solvation -60.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds