Wall clock time and date at job start Tue Mar 31 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99778 * 2 1 4 4 H 1.08994 * 110.43630 * 328.90782 * 3 2 1 5 5 C 1.54270 * 110.48764 * 91.45273 * 3 2 1 6 6 C 1.53868 * 106.59801 * 142.28669 * 5 3 2 7 7 C 1.54260 * 106.60242 * 0.02562 * 6 5 3 8 8 H 1.08996 * 110.49401 * 95.19979 * 7 6 5 9 9 O 1.45201 * 110.48767 * 217.71383 * 7 6 5 10 10 C 1.34781 * 116.99740 * 266.75453 * 9 7 6 11 11 O 1.21500 * 120.00018 * 359.97438 * 10 9 7 12 12 C 1.47505 * 119.99901 * 179.97438 * 10 9 7 13 13 C 1.40077 * 119.90124 * 180.02562 * 12 10 9 14 14 C 1.36294 * 120.10053 * 180.02562 * 13 12 10 15 15 C 1.40897 * 119.90018 * 359.97438 * 14 13 12 16 16 C 1.41096 * 120.09741 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99876 * 334.71884 * 16 15 14 18 18 C 1.40242 * 119.99855 * 154.71971 * 16 15 14 19 19 N 1.30632 * 120.00307 * 334.31452 * 18 16 15 20 20 Si 1.86803 * 119.99810 * 154.30734 * 18 16 15 21 21 H 1.48501 * 109.47123 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47468 * 300.00415 * 20 18 16 23 23 H 1.48503 * 109.46755 * 60.00314 * 20 18 16 24 24 C 1.40900 * 119.80310 * 0.25878 * 15 14 13 25 25 C 1.36295 * 119.89476 * 359.45998 * 24 15 14 26 26 C 1.54892 * 104.31094 * 336.45104 * 7 6 5 27 27 H 1.08995 * 109.46800 * 60.00726 * 1 2 3 28 28 H 1.09002 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47216 * 300.00184 * 1 2 3 30 30 H 1.09005 * 110.03068 * 23.00058 * 5 3 2 31 31 H 1.08995 * 110.06941 * 261.59491 * 5 3 2 32 32 H 1.08996 * 110.03480 * 240.71092 * 6 5 3 33 33 H 1.09008 * 110.03025 * 119.28847 * 6 5 3 34 34 H 1.07997 * 119.94226 * 359.97438 * 13 12 10 35 35 H 1.08000 * 120.04941 * 180.02562 * 14 13 12 36 36 H 0.97004 * 119.99724 * 354.24285 * 19 18 16 37 37 H 1.07998 * 120.05234 * 179.74699 * 24 15 14 38 38 H 1.08004 * 119.94657 * 180.27888 * 25 24 15 39 39 H 1.09001 * 110.75466 * 156.19429 * 26 7 6 40 40 H 1.09003 * 110.75837 * 279.56364 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3659 2.0089 -0.5274 5 6 2.2632 1.7839 1.4447 6 6 3.5941 2.5559 1.4252 7 6 4.1030 2.5204 -0.0305 8 1 3.8006 3.4223 -0.5626 9 8 5.5474 2.3744 -0.0605 10 6 6.2755 3.5066 -0.1280 11 8 5.7186 4.5859 -0.1613 12 6 7.7485 3.4352 -0.1614 13 6 8.5032 4.6132 -0.2309 14 6 9.8644 4.5520 -0.2625 15 6 10.5123 3.3014 -0.2245 16 6 11.9213 3.2332 -0.2575 17 1 12.4903 4.0337 -0.7070 18 6 12.5827 2.1260 0.2932 19 7 12.0142 1.4308 1.2418 20 14 14.2769 1.6452 -0.3300 21 1 14.7556 0.4499 0.4098 22 1 14.2009 1.3331 -1.7798 23 1 15.2212 2.7709 -0.1147 24 6 9.7490 2.1189 -0.1595 25 6 8.3884 2.1899 -0.1226 26 6 3.4194 1.2736 -0.6448 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.3384 0.9268 2.1140 31 1 1.4555 2.4402 1.7682 32 1 4.3152 2.0737 2.0852 33 1 3.4320 3.5873 1.7387 34 1 8.0056 5.5713 -0.2604 35 1 10.4455 5.4608 -0.3158 36 1 11.1732 1.7278 1.6233 37 1 10.2413 1.1580 -0.1344 38 1 7.8025 1.2842 -0.0682 39 1 3.3528 1.3644 -1.7290 40 1 3.9507 0.3641 -0.3642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282579160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:09 Heat of formation + Delta-G solvation = -137.665065 kcal Electronic energy + Delta-G solvation = -22242.412129 eV Core-core repulsion = 18792.879380 eV Total energy + Delta-G solvation = -3449.532749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.98097 -38.80380 -37.69317 -36.30175 -34.71791 -34.14489 -30.31260 -29.53404 -28.96542 -27.95130 -26.29242 -25.75933 -22.67945 -21.23430 -20.89634 -20.59401 -19.79086 -18.20592 -17.43121 -16.81055 -16.42137 -15.74838 -15.16579 -14.89756 -14.72153 -14.53760 -14.28761 -13.88153 -13.64829 -13.32701 -12.71368 -12.47232 -12.33245 -12.17551 -12.11462 -11.93890 -11.71729 -11.54564 -11.45610 -11.19474 -11.03231 -10.85262 -10.55845 -10.48026 -10.14375 -10.00603 -9.76909 -9.75057 -9.48470 -9.28035 -7.99987 -7.85573 -7.51753 -4.79514 1.97667 2.82871 2.97224 3.03080 3.15184 3.21853 3.56158 3.70051 3.79316 4.34413 4.42884 4.46783 4.74588 5.01425 5.05979 5.14861 5.25889 5.29280 5.32260 5.34057 5.36551 5.50390 5.70212 5.81517 5.86821 5.97801 6.03181 6.09534 6.11130 6.24507 6.58820 6.78034 6.83499 6.98004 7.07158 7.14672 7.42237 7.48405 7.53538 7.65982 7.87937 8.03278 8.43487 8.54662 8.68583 9.68483 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029318 B = 0.002957 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.805630 B = 9467.253603 C =10073.898321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.085 3.915 4 H 0.070 0.930 5 C -0.142 4.142 6 C -0.138 4.138 7 C 0.086 3.914 8 H 0.089 0.911 9 O -0.350 6.350 10 C 0.515 3.485 11 O -0.553 6.553 12 C -0.286 4.286 13 C -0.011 4.011 14 C -0.240 4.240 15 C 0.110 3.890 16 C -0.483 4.483 17 H 0.085 0.915 18 C 0.034 3.966 19 N -0.765 5.765 20 Si 1.068 2.932 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.272 1.272 24 C -0.237 4.237 25 C -0.022 4.022 26 C -0.114 4.114 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.306 0.694 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.874 -2.632 -0.904 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.027 3.973 4 H 0.088 0.912 5 C -0.180 4.180 6 C -0.176 4.176 7 C 0.030 3.970 8 H 0.107 0.893 9 O -0.268 6.268 10 C 0.367 3.633 11 O -0.447 6.447 12 C -0.288 4.288 13 C -0.030 4.030 14 C -0.259 4.259 15 C 0.106 3.894 16 C -0.509 4.509 17 H 0.104 0.896 18 C -0.192 4.192 19 N -0.386 5.386 20 Si 0.890 3.110 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.256 4.256 25 C -0.040 4.040 26 C -0.152 4.152 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.790 -3.675 -0.682 13.325 hybrid contribution -1.682 1.534 -0.051 2.277 sum -14.472 -2.141 -0.733 14.648 Atomic orbital electron populations 1.22779 0.81217 1.02708 0.99932 1.87939 1.19518 1.27423 1.94934 1.22923 0.94316 0.84508 0.95561 0.91171 1.22599 0.97358 1.00522 0.97536 1.22482 0.96919 1.01187 0.97027 1.23254 0.78506 0.98809 0.96423 0.89346 1.86669 1.18716 1.36491 1.84910 1.21523 0.88909 0.81040 0.71784 1.90678 1.73347 1.29800 1.50833 1.18158 0.86513 0.94968 1.29159 1.20375 0.93570 0.95733 0.93305 1.20633 0.93219 0.96812 1.15205 1.17878 0.93447 0.91358 0.86720 1.20970 0.92243 1.06140 1.31534 0.89646 1.27350 1.06445 0.92071 0.93297 1.70385 1.17918 1.35759 1.14572 0.83582 0.72384 0.77676 0.77341 1.19462 1.19548 1.19719 1.20871 0.93049 0.97919 1.13781 1.20595 0.94541 0.95356 0.93554 1.22558 0.93577 0.98925 1.00115 0.94047 0.89653 0.94068 0.90241 0.91479 0.90167 0.90900 0.87831 0.88006 0.88019 0.87204 0.87766 0.90211 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.87 101.05 1.10 1.33 16 2 O -0.38 -4.32 10.42 -35.23 -0.37 -4.69 16 3 C 0.08 0.93 3.32 -25.01 -0.08 0.85 16 4 H 0.07 0.66 7.86 -51.93 -0.41 0.25 16 5 C -0.14 -1.54 6.56 -25.61 -0.17 -1.71 16 6 C -0.14 -1.86 6.57 -25.62 -0.17 -2.03 16 7 C 0.09 1.32 3.19 -25.07 -0.08 1.24 16 8 H 0.09 1.40 7.20 -51.93 -0.37 1.02 16 9 O -0.35 -6.73 9.17 -40.71 -0.37 -7.10 16 10 C 0.51 11.31 7.89 34.51 0.27 11.58 16 11 O -0.55 -12.77 15.60 -19.26 -0.30 -13.07 16 12 C -0.29 -6.66 5.89 -104.74 -0.62 -7.27 16 13 C -0.01 -0.26 9.52 -39.59 -0.38 -0.64 16 14 C -0.24 -5.71 9.73 -39.28 -0.38 -6.09 16 15 C 0.11 2.75 5.30 -106.80 -0.57 2.18 16 16 C -0.48 -11.82 8.98 -37.75 -0.34 -12.16 16 17 H 0.09 2.00 7.97 -52.49 -0.42 1.58 16 18 C 0.03 0.79 4.93 -17.31 -0.09 0.71 16 19 N -0.77 -18.77 12.31 55.56 0.68 -18.09 16 20 Si 1.07 19.56 30.01 -169.99 -5.10 14.46 16 21 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 23 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 24 C -0.24 -5.79 7.90 -39.27 -0.31 -6.10 16 25 C -0.02 -0.50 9.55 -39.60 -0.38 -0.88 16 26 C -0.11 -1.46 6.36 -24.67 -0.16 -1.62 16 27 H 0.04 0.28 8.10 -51.93 -0.42 -0.14 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 33 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 34 H 0.10 2.29 7.63 -52.49 -0.40 1.88 16 35 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.31 7.73 6.71 -40.82 -0.27 7.45 16 37 H 0.11 2.71 6.49 -52.49 -0.34 2.37 16 38 H 0.10 2.20 7.59 -52.48 -0.40 1.80 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 337.96 15.07 5.09 5.09 Total: -1.00 -27.59 337.96 -8.33 -35.92 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.63 Total: 8.07 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -2.34 Total: -20.60 kcal Atomic # 7 Polarization: -18.77 SS G_CDS: 0.68 Total: -18.09 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.04 Total: -24.86 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.10 Total: 14.46 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.59 -8.33 -35.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282579160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.742 kcal (2) G-P(sol) polarization free energy of solvation -27.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds