Wall clock time and date at job start Tue Mar 31 2020 06:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99778 * 2 1 4 4 H 1.08994 * 110.43630 * 328.90782 * 3 2 1 5 5 C 1.54270 * 110.48764 * 91.45273 * 3 2 1 6 6 C 1.53868 * 106.59801 * 142.28669 * 5 3 2 7 7 C 1.54260 * 106.60242 * 0.02562 * 6 5 3 8 8 H 1.08996 * 110.49401 * 95.19979 * 7 6 5 9 9 O 1.45201 * 110.48767 * 217.71383 * 7 6 5 10 10 C 1.34781 * 116.99740 * 266.75453 * 9 7 6 11 11 O 1.21500 * 120.00018 * 359.97438 * 10 9 7 12 12 C 1.47505 * 119.99901 * 179.97438 * 10 9 7 13 13 C 1.40077 * 119.90124 * 180.02562 * 12 10 9 14 14 C 1.36294 * 120.10053 * 180.02562 * 13 12 10 15 15 C 1.40897 * 119.90018 * 359.97438 * 14 13 12 16 16 C 1.41096 * 120.09741 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99876 * 334.71884 * 16 15 14 18 18 C 1.40242 * 119.99855 * 154.71971 * 16 15 14 19 19 N 1.30632 * 120.00307 * 334.31452 * 18 16 15 20 20 Si 1.86803 * 119.99810 * 154.30734 * 18 16 15 21 21 H 1.48501 * 109.47123 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47468 * 300.00415 * 20 18 16 23 23 H 1.48503 * 109.46755 * 60.00314 * 20 18 16 24 24 C 1.40900 * 119.80310 * 0.25878 * 15 14 13 25 25 C 1.36295 * 119.89476 * 359.45998 * 24 15 14 26 26 C 1.54892 * 104.31094 * 336.45104 * 7 6 5 27 27 H 1.08995 * 109.46800 * 60.00726 * 1 2 3 28 28 H 1.09002 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47216 * 300.00184 * 1 2 3 30 30 H 1.09005 * 110.03068 * 23.00058 * 5 3 2 31 31 H 1.08995 * 110.06941 * 261.59491 * 5 3 2 32 32 H 1.08996 * 110.03480 * 240.71092 * 6 5 3 33 33 H 1.09008 * 110.03025 * 119.28847 * 6 5 3 34 34 H 1.07997 * 119.94226 * 359.97438 * 13 12 10 35 35 H 1.08000 * 120.04941 * 180.02562 * 14 13 12 36 36 H 0.97004 * 119.99724 * 354.24285 * 19 18 16 37 37 H 1.07998 * 120.05234 * 179.74699 * 24 15 14 38 38 H 1.08004 * 119.94657 * 180.27888 * 25 24 15 39 39 H 1.09001 * 110.75466 * 156.19429 * 26 7 6 40 40 H 1.09003 * 110.75837 * 279.56364 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3659 2.0089 -0.5274 5 6 2.2632 1.7839 1.4447 6 6 3.5941 2.5559 1.4252 7 6 4.1030 2.5204 -0.0305 8 1 3.8006 3.4223 -0.5626 9 8 5.5474 2.3744 -0.0605 10 6 6.2755 3.5066 -0.1280 11 8 5.7186 4.5859 -0.1613 12 6 7.7485 3.4352 -0.1614 13 6 8.5032 4.6132 -0.2309 14 6 9.8644 4.5520 -0.2625 15 6 10.5123 3.3014 -0.2245 16 6 11.9213 3.2332 -0.2575 17 1 12.4903 4.0337 -0.7070 18 6 12.5827 2.1260 0.2932 19 7 12.0142 1.4308 1.2418 20 14 14.2769 1.6452 -0.3300 21 1 14.7556 0.4499 0.4098 22 1 14.2009 1.3331 -1.7798 23 1 15.2212 2.7709 -0.1147 24 6 9.7490 2.1189 -0.1595 25 6 8.3884 2.1899 -0.1226 26 6 3.4194 1.2736 -0.6448 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.3384 0.9268 2.1140 31 1 1.4555 2.4402 1.7682 32 1 4.3152 2.0737 2.0852 33 1 3.4320 3.5873 1.7387 34 1 8.0056 5.5713 -0.2604 35 1 10.4455 5.4608 -0.3158 36 1 11.1732 1.7278 1.6233 37 1 10.2413 1.1580 -0.1344 38 1 7.8025 1.2842 -0.0682 39 1 3.3528 1.3644 -1.7290 40 1 3.9507 0.3641 -0.3642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282579160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:08 Heat of formation + Delta-G solvation = -150.417403 kcal Electronic energy + Delta-G solvation = -22242.965112 eV Core-core repulsion = 18792.879380 eV Total energy + Delta-G solvation = -3450.085732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50465 -39.98636 -39.35062 -37.65593 -36.01158 -35.94350 -32.14458 -31.39729 -29.95064 -29.02059 -27.69506 -26.85001 -24.38699 -23.06124 -22.13605 -21.87597 -21.16431 -20.03261 -18.91332 -18.12985 -17.49062 -17.12030 -16.55828 -16.40278 -16.01710 -15.85424 -15.49037 -15.32945 -15.14125 -14.53422 -14.29487 -14.21484 -14.02814 -13.46728 -13.31101 -13.24815 -13.04083 -12.89043 -12.69018 -12.53953 -12.36159 -11.99371 -11.89356 -11.72228 -11.61252 -11.49932 -11.44106 -11.24380 -11.02563 -10.56648 -9.87785 -9.75021 -9.37712 -6.69725 0.14812 0.93918 1.44792 1.53471 1.77091 1.81513 1.87393 2.27164 2.60581 2.80161 3.36926 3.43504 3.46522 3.79767 3.95978 4.15502 4.19077 4.25280 4.26975 4.29902 4.38922 4.48169 4.55890 4.59299 4.71568 4.74561 4.87018 4.88905 4.92396 4.93430 4.98440 5.05043 5.11538 5.26906 5.46429 5.53931 5.61080 5.68043 5.79243 6.01050 6.15029 6.24051 6.56102 6.68143 6.96929 7.80532 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029318 B = 0.002957 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.805630 B = 9467.253603 C =10073.898321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.091 3.909 4 H 0.091 0.909 5 C -0.134 4.134 6 C -0.137 4.137 7 C 0.075 3.925 8 H 0.085 0.915 9 O -0.354 6.354 10 C 0.520 3.480 11 O -0.566 6.566 12 C -0.297 4.297 13 C -0.015 4.015 14 C -0.249 4.249 15 C 0.087 3.913 16 C -0.505 4.505 17 H 0.091 0.909 18 C 0.004 3.996 19 N -0.782 5.782 20 Si 1.119 2.881 21 H -0.270 1.270 22 H -0.260 1.260 23 H -0.253 1.253 24 C -0.250 4.250 25 C -0.018 4.018 26 C -0.112 4.112 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.291 0.709 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.880 -2.912 -1.274 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.033 3.967 4 H 0.109 0.891 5 C -0.171 4.171 6 C -0.175 4.175 7 C 0.020 3.980 8 H 0.103 0.897 9 O -0.271 6.271 10 C 0.373 3.627 11 O -0.461 6.461 12 C -0.300 4.300 13 C -0.034 4.034 14 C -0.268 4.268 15 C 0.083 3.917 16 C -0.531 4.531 17 H 0.109 0.891 18 C -0.217 4.217 19 N -0.403 5.403 20 Si 0.935 3.065 21 H -0.194 1.194 22 H -0.185 1.185 23 H -0.177 1.177 24 C -0.269 4.269 25 C -0.037 4.037 26 C -0.149 4.149 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.835 -3.952 -1.047 14.426 hybrid contribution -1.537 1.621 0.071 2.235 sum -15.372 -2.331 -0.976 15.579 Atomic orbital electron populations 1.23004 0.79305 1.03941 1.01064 1.87907 1.21631 1.27458 1.95043 1.22868 0.93404 0.85075 0.95379 0.89112 1.22560 0.96331 1.00518 0.97737 1.22471 0.98122 1.01563 0.95337 1.23650 0.76186 1.00043 0.98114 0.89712 1.86633 1.21068 1.35155 1.84293 1.21255 0.88621 0.81438 0.71400 1.90660 1.73625 1.30439 1.51425 1.18430 0.87750 0.95051 1.28740 1.20543 0.93542 0.96346 0.92975 1.20819 0.93664 0.96986 1.15344 1.18202 0.94244 0.91994 0.87256 1.21234 0.92312 1.07272 1.32267 0.89065 1.28763 1.09295 0.91340 0.92314 1.70494 1.17678 1.36300 1.15810 0.82974 0.68396 0.77967 0.77185 1.19417 1.18478 1.17655 1.20863 0.93609 0.97538 1.14911 1.20732 0.94211 0.96059 0.92713 1.22562 0.94622 0.96965 1.00769 0.92867 0.88515 0.92939 0.90290 0.89138 0.91465 0.90946 0.86763 0.86788 0.89586 0.88007 0.86206 0.89287 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.87 113.37 1.23 1.52 16 2 O -0.40 -8.24 10.42 -148.98 -1.55 -9.79 16 3 C 0.09 1.77 3.32 31.71 0.11 1.88 16 4 H 0.09 1.42 7.86 -2.39 -0.02 1.40 16 5 C -0.13 -2.60 6.56 31.32 0.21 -2.39 16 6 C -0.14 -3.55 6.57 31.31 0.21 -3.34 16 7 C 0.07 2.24 3.19 31.67 0.10 2.34 16 8 H 0.08 2.61 7.20 -2.39 -0.02 2.59 16 9 O -0.35 -13.52 9.17 -56.92 -0.52 -14.04 16 10 C 0.52 22.77 7.89 70.27 0.55 23.32 16 11 O -0.57 -25.94 15.60 19.83 0.31 -25.63 16 12 C -0.30 -13.91 5.89 -19.94 -0.12 -14.03 16 13 C -0.02 -0.72 9.52 22.26 0.21 -0.51 16 14 C -0.25 -11.96 9.73 22.47 0.22 -11.74 16 15 C 0.09 4.41 5.30 -21.28 -0.11 4.30 16 16 C -0.51 -24.89 8.98 23.46 0.21 -24.68 16 17 H 0.09 4.26 7.97 -2.91 -0.02 4.24 16 18 C 0.00 0.16 4.93 85.36 0.42 0.59 16 19 N -0.78 -38.88 12.31 21.87 0.27 -38.62 16 20 Si 1.12 38.43 30.01 68.60 2.06 40.49 16 21 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 22 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 23 H -0.25 -7.86 7.11 99.48 0.71 -7.15 16 24 C -0.25 -12.45 7.90 22.47 0.18 -12.28 16 25 C -0.02 -0.86 9.55 22.26 0.21 -0.65 16 26 C -0.11 -2.72 6.36 31.93 0.20 -2.51 16 27 H 0.05 0.56 8.10 -2.39 -0.02 0.54 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 30 H 0.08 1.56 8.07 -2.38 -0.02 1.55 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.91 8.07 -2.39 -0.02 1.89 16 33 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.11 5.02 7.63 -2.91 -0.02 4.99 16 35 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 36 H 0.29 15.17 6.71 -92.71 -0.62 14.55 16 37 H 0.10 5.16 6.49 -2.91 -0.02 5.14 16 38 H 0.12 5.08 7.59 -2.91 -0.02 5.06 16 39 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -58.98 337.96 5.57 -53.41 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 1.18 Total: 32.36 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 3.83 Total: -38.19 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.27 Total: -38.62 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -1.76 Total: -49.45 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.06 Total: 40.49 kcal Total: -58.98 5.57 -53.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282579160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.003 kcal (2) G-P(sol) polarization free energy of solvation -58.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds