Wall clock time and date at job start Tue Mar 31 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99656 * 2 1 4 4 H 1.08999 * 110.43440 * 31.09248 * 3 2 1 5 5 C 1.54884 * 110.48963 * 268.54515 * 3 2 1 6 6 C 1.54883 * 102.75286 * 203.38175 * 5 3 2 7 7 C 1.54273 * 104.19397 * 37.94410 * 6 5 3 8 8 H 1.09000 * 110.02933 * 95.72319 * 7 6 5 9 9 O 1.45200 * 110.02988 * 217.10595 * 7 6 5 10 10 C 1.34772 * 117.00100 * 268.54092 * 9 7 6 11 11 O 1.21513 * 120.00116 * 0.02562 * 10 9 7 12 12 C 1.47503 * 120.00271 * 179.97438 * 10 9 7 13 13 C 1.40077 * 119.90213 * 359.73280 * 12 10 9 14 14 C 1.36294 * 120.10428 * 179.75895 * 13 12 10 15 15 C 1.40903 * 119.89600 * 0.50976 * 14 13 12 16 16 C 1.41092 * 120.09690 * 179.71864 * 15 14 13 17 17 H 1.07996 * 120.00076 * 204.65697 * 16 15 14 18 18 C 1.40249 * 119.99918 * 24.65819 * 16 15 14 19 19 N 1.30631 * 120.00104 * 17.87350 * 18 16 15 20 20 Si 1.86800 * 119.99943 * 197.87174 * 18 16 15 21 21 H 1.48506 * 109.46945 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47320 * 120.00074 * 20 18 16 23 23 H 1.48494 * 109.47174 * 240.00220 * 20 18 16 24 24 C 1.40898 * 119.80445 * 359.74396 * 15 14 13 25 25 C 1.36299 * 119.89429 * 359.97438 * 24 15 14 26 26 C 1.53872 * 106.59507 * 336.39096 * 7 6 5 27 27 H 1.09003 * 109.47327 * 59.99928 * 1 2 3 28 28 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46925 * 299.99889 * 1 2 3 30 30 H 1.09000 * 110.75897 * 321.70168 * 5 3 2 31 31 H 1.09002 * 110.75790 * 85.06732 * 5 3 2 32 32 H 1.09004 * 110.49206 * 156.62109 * 6 5 3 33 33 H 1.09000 * 110.49077 * 279.26671 * 6 5 3 34 34 H 1.08003 * 119.94379 * 0.02562 * 13 12 10 35 35 H 1.07998 * 120.05030 * 180.22758 * 14 13 12 36 36 H 0.96998 * 119.99668 * 179.97438 * 19 18 16 37 37 H 1.07995 * 120.05182 * 179.97438 * 24 15 14 38 38 H 1.08001 * 119.94634 * 180.02562 * 25 24 15 39 39 H 1.09007 * 110.03110 * 240.71188 * 26 7 6 40 40 H 1.09002 * 110.03249 * 119.28846 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3659 2.0089 0.5275 5 6 2.2643 1.7858 -1.4504 6 6 3.3849 2.8397 -1.2701 7 6 4.2881 2.2469 -0.1689 8 1 5.1253 1.7139 -0.6195 9 8 4.7798 3.3057 0.6945 10 6 5.9593 3.8673 0.3632 11 8 6.5602 3.4829 -0.6206 12 6 6.5204 4.9492 1.1940 13 6 5.8228 5.3954 2.3238 14 6 6.3398 6.3914 3.0972 15 6 7.5728 6.9800 2.7527 16 6 8.1090 8.0155 3.5469 17 1 8.7997 8.7247 3.1153 18 6 7.7450 8.1239 4.8970 19 7 7.2075 7.1047 5.5125 20 14 8.0289 9.7257 5.8152 21 1 8.6459 10.7186 4.8994 22 1 6.7304 10.2494 6.3101 23 1 8.9354 9.4826 6.9660 24 6 8.2684 6.5317 1.6123 25 6 7.7466 5.5311 0.8480 26 6 3.4140 1.2714 0.6386 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.6064 0.9614 -2.0760 31 1 1.3676 2.2431 -1.8686 32 1 3.9449 2.9637 -2.1971 33 1 2.9646 3.7921 -0.9471 34 1 4.8759 4.9463 2.5849 35 1 5.8030 6.7322 3.9702 36 1 6.9562 7.1795 6.4463 37 1 9.2135 6.9803 1.3443 38 1 8.2793 5.1866 -0.0260 39 1 3.3590 1.5928 1.6788 40 1 3.8266 0.2642 0.5800 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282579166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:11 Heat of formation + Delta-G solvation = -131.944375 kcal Electronic energy + Delta-G solvation = -22251.454046 eV Core-core repulsion = 18802.169364 eV Total energy + Delta-G solvation = -3449.284682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94230 -38.71575 -37.47133 -36.21770 -34.61075 -33.95457 -30.37675 -29.51680 -28.93959 -27.91815 -26.28918 -25.82963 -22.63527 -21.02738 -20.95481 -20.43567 -19.76061 -17.57806 -17.35489 -16.66466 -16.40185 -15.83089 -15.38107 -15.10708 -14.86845 -14.15981 -14.01042 -13.76809 -13.40955 -13.04147 -12.90972 -12.65790 -12.27408 -12.13414 -11.98644 -11.78207 -11.51056 -11.48294 -11.38353 -11.31522 -10.98789 -10.81222 -10.74159 -10.55027 -10.13729 -10.04261 -9.70783 -9.61789 -9.43235 -9.36816 -7.76656 -7.64949 -7.11019 -4.68785 2.05241 2.84321 2.91661 2.97266 3.01860 3.33894 3.59852 3.65469 3.69878 4.41140 4.45062 4.50794 4.94173 5.06553 5.11745 5.21173 5.28727 5.35946 5.40605 5.49011 5.51249 5.53782 5.69572 5.86271 5.90470 5.98916 6.13746 6.18365 6.24592 6.31326 6.73322 6.78679 6.97979 7.02733 7.05913 7.16301 7.40413 7.66685 7.77535 7.82781 7.99566 8.34298 8.55416 8.68403 8.76669 9.80238 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026616 B = 0.003043 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.746969 B = 9198.626626 C = 9960.068742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.084 3.916 4 H 0.072 0.928 5 C -0.143 4.143 6 C -0.138 4.138 7 C 0.087 3.913 8 H 0.088 0.912 9 O -0.354 6.354 10 C 0.514 3.486 11 O -0.552 6.552 12 C -0.275 4.275 13 C -0.043 4.043 14 C -0.185 4.185 15 C 0.131 3.869 16 C -0.435 4.435 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.764 5.764 20 Si 0.915 3.085 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.271 1.271 24 C -0.240 4.240 25 C -0.018 4.018 26 C -0.118 4.118 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.288 0.712 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.640 -6.666 -4.895 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.027 3.973 4 H 0.090 0.910 5 C -0.180 4.180 6 C -0.176 4.176 7 C 0.031 3.969 8 H 0.106 0.894 9 O -0.272 6.272 10 C 0.367 3.633 11 O -0.446 6.446 12 C -0.278 4.278 13 C -0.062 4.062 14 C -0.204 4.204 15 C 0.128 3.872 16 C -0.462 4.462 17 H 0.106 0.894 18 C -0.150 4.150 19 N -0.386 5.386 20 Si 0.738 3.262 21 H -0.180 1.180 22 H -0.193 1.193 23 H -0.196 1.196 24 C -0.259 4.259 25 C -0.037 4.037 26 C -0.156 4.156 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.462 -7.053 -4.933 13.547 hybrid contribution -0.090 0.736 0.393 0.839 sum -10.552 -6.317 -4.540 13.109 Atomic orbital electron populations 1.22765 0.81227 1.02579 0.99998 1.87906 1.19553 1.27773 1.94960 1.23003 0.94515 0.84242 0.95584 0.90957 1.22945 0.98771 0.98995 0.97336 1.22725 0.96587 0.99177 0.99091 1.23075 0.96302 0.87471 0.90027 0.89436 1.86688 1.38062 1.48991 1.53411 1.21576 0.77514 0.81021 0.83226 1.90681 1.61085 1.63749 1.29123 1.18234 1.01351 1.05474 1.02696 1.20640 0.97342 0.95401 0.92771 1.21008 0.97011 1.00659 1.01743 1.17854 0.89939 0.89395 0.90048 1.19955 1.22091 1.10188 0.93921 0.89448 1.26161 0.92568 0.97893 0.98349 1.69748 1.27133 1.29738 1.11986 0.86136 0.79322 0.81319 0.79408 1.17973 1.19276 1.19563 1.20686 1.01257 1.02842 1.01129 1.20352 0.92738 0.93888 0.96681 1.22220 0.93176 0.99499 1.00686 0.94114 0.89770 0.93968 0.90253 0.91154 0.90498 0.90181 0.88079 0.86063 0.90048 0.88078 0.87977 0.89349 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.87 101.05 1.10 1.35 16 2 O -0.38 -4.41 10.41 -35.23 -0.37 -4.78 16 3 C 0.08 0.96 3.32 -25.08 -0.08 0.88 16 4 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 5 C -0.14 -1.55 6.62 -24.74 -0.16 -1.71 16 6 C -0.14 -1.84 6.56 -25.07 -0.16 -2.01 16 7 C 0.09 1.35 3.23 -25.61 -0.08 1.27 16 8 H 0.09 1.45 7.19 -51.93 -0.37 1.07 16 9 O -0.35 -6.80 9.02 -40.69 -0.37 -7.16 16 10 C 0.51 11.39 7.88 34.51 0.27 11.66 16 11 O -0.55 -12.92 15.60 -19.27 -0.30 -13.22 16 12 C -0.28 -6.48 5.89 -104.75 -0.62 -7.09 16 13 C -0.04 -0.99 9.55 -39.59 -0.38 -1.37 16 14 C -0.19 -4.58 8.63 -39.27 -0.34 -4.92 16 15 C 0.13 3.31 5.58 -106.80 -0.60 2.71 16 16 C -0.43 -10.61 9.04 -37.74 -0.34 -10.95 16 17 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.66 5.14 -17.31 -0.09 1.57 16 19 N -0.76 -18.05 10.95 55.56 0.61 -17.44 16 20 Si 0.91 16.88 29.60 -169.99 -5.03 11.84 16 21 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 22 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 23 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 24 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 25 C -0.02 -0.42 9.52 -39.59 -0.38 -0.80 16 26 C -0.12 -1.54 6.38 -25.62 -0.16 -1.70 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.31 8.10 -51.93 -0.42 -0.11 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.10 2.15 7.59 -52.48 -0.40 1.75 16 35 H 0.12 3.03 6.16 -52.49 -0.32 2.70 16 36 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 37 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 38 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 39 H 0.09 1.17 7.96 -51.92 -0.41 0.76 16 40 H 0.09 1.09 8.07 -51.93 -0.42 0.67 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -27.55 338.45 -8.42 -35.98 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.66 Total: 6.90 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.41 Total: -17.22 kcal Atomic # 7 Polarization: -18.05 SS G_CDS: 0.61 Total: -17.44 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -1.03 Total: -25.16 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.84 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.55 -8.42 -35.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282579166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.967 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds