Wall clock time and date at job start Tue Mar 31 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99656 * 2 1 4 4 H 1.08999 * 110.43440 * 31.09248 * 3 2 1 5 5 C 1.54884 * 110.48963 * 268.54515 * 3 2 1 6 6 C 1.54883 * 102.75286 * 203.38175 * 5 3 2 7 7 C 1.54273 * 104.19397 * 37.94410 * 6 5 3 8 8 H 1.09000 * 110.02933 * 95.72319 * 7 6 5 9 9 O 1.45200 * 110.02988 * 217.10595 * 7 6 5 10 10 C 1.34772 * 117.00100 * 268.54092 * 9 7 6 11 11 O 1.21513 * 120.00116 * 0.02562 * 10 9 7 12 12 C 1.47503 * 120.00271 * 179.97438 * 10 9 7 13 13 C 1.40077 * 119.90213 * 359.73280 * 12 10 9 14 14 C 1.36294 * 120.10428 * 179.75895 * 13 12 10 15 15 C 1.40903 * 119.89600 * 0.50976 * 14 13 12 16 16 C 1.41092 * 120.09690 * 179.71864 * 15 14 13 17 17 H 1.07996 * 120.00076 * 204.65697 * 16 15 14 18 18 C 1.40249 * 119.99918 * 24.65819 * 16 15 14 19 19 N 1.30631 * 120.00104 * 17.87350 * 18 16 15 20 20 Si 1.86800 * 119.99943 * 197.87174 * 18 16 15 21 21 H 1.48506 * 109.46945 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47320 * 120.00074 * 20 18 16 23 23 H 1.48494 * 109.47174 * 240.00220 * 20 18 16 24 24 C 1.40898 * 119.80445 * 359.74396 * 15 14 13 25 25 C 1.36299 * 119.89429 * 359.97438 * 24 15 14 26 26 C 1.53872 * 106.59507 * 336.39096 * 7 6 5 27 27 H 1.09003 * 109.47327 * 59.99928 * 1 2 3 28 28 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46925 * 299.99889 * 1 2 3 30 30 H 1.09000 * 110.75897 * 321.70168 * 5 3 2 31 31 H 1.09002 * 110.75790 * 85.06732 * 5 3 2 32 32 H 1.09004 * 110.49206 * 156.62109 * 6 5 3 33 33 H 1.09000 * 110.49077 * 279.26671 * 6 5 3 34 34 H 1.08003 * 119.94379 * 0.02562 * 13 12 10 35 35 H 1.07998 * 120.05030 * 180.22758 * 14 13 12 36 36 H 0.96998 * 119.99668 * 179.97438 * 19 18 16 37 37 H 1.07995 * 120.05182 * 179.97438 * 24 15 14 38 38 H 1.08001 * 119.94634 * 180.02562 * 25 24 15 39 39 H 1.09007 * 110.03110 * 240.71188 * 26 7 6 40 40 H 1.09002 * 110.03249 * 119.28846 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3659 2.0089 0.5275 5 6 2.2643 1.7858 -1.4504 6 6 3.3849 2.8397 -1.2701 7 6 4.2881 2.2469 -0.1689 8 1 5.1253 1.7139 -0.6195 9 8 4.7798 3.3057 0.6945 10 6 5.9593 3.8673 0.3632 11 8 6.5602 3.4829 -0.6206 12 6 6.5204 4.9492 1.1940 13 6 5.8228 5.3954 2.3238 14 6 6.3398 6.3914 3.0972 15 6 7.5728 6.9800 2.7527 16 6 8.1090 8.0155 3.5469 17 1 8.7997 8.7247 3.1153 18 6 7.7450 8.1239 4.8970 19 7 7.2075 7.1047 5.5125 20 14 8.0289 9.7257 5.8152 21 1 8.6459 10.7186 4.8994 22 1 6.7304 10.2494 6.3101 23 1 8.9354 9.4826 6.9660 24 6 8.2684 6.5317 1.6123 25 6 7.7466 5.5311 0.8480 26 6 3.4140 1.2714 0.6386 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.6064 0.9614 -2.0760 31 1 1.3676 2.2431 -1.8686 32 1 3.9449 2.9637 -2.1971 33 1 2.9646 3.7921 -0.9471 34 1 4.8759 4.9463 2.5849 35 1 5.8030 6.7322 3.9702 36 1 6.9562 7.1795 6.4463 37 1 9.2135 6.9803 1.3443 38 1 8.2793 5.1866 -0.0260 39 1 3.3590 1.5928 1.6788 40 1 3.8266 0.2642 0.5800 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282579166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:10 Heat of formation + Delta-G solvation = -144.694807 kcal Electronic energy + Delta-G solvation = -22252.006946 eV Core-core repulsion = 18802.169364 eV Total energy + Delta-G solvation = -3449.837582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45650 -39.89022 -39.14216 -37.59189 -35.90521 -35.73670 -32.19410 -31.37867 -29.93822 -29.02561 -27.78295 -26.82088 -24.33808 -22.84895 -22.09091 -21.79943 -21.17992 -19.40831 -18.83720 -17.87655 -17.70211 -17.22088 -16.95009 -16.29918 -15.87406 -15.77806 -15.40908 -15.10804 -14.78890 -14.55296 -14.17327 -14.00351 -13.85151 -13.80346 -13.27053 -13.24177 -12.88977 -12.84484 -12.65870 -12.42348 -12.40989 -12.27791 -11.84317 -11.80935 -11.63271 -11.44675 -11.37974 -11.21334 -11.12863 -10.51566 -9.63616 -9.53281 -8.85104 -6.55305 0.24406 1.13178 1.36044 1.41519 1.56735 1.87761 1.89545 2.15394 2.67500 2.76797 3.41209 3.47385 3.62795 3.93809 4.05848 4.15657 4.27293 4.34969 4.37125 4.41760 4.44672 4.51008 4.58626 4.61698 4.81306 4.86977 4.89800 4.92264 4.95262 4.99664 5.06432 5.11814 5.14372 5.23512 5.54629 5.56176 5.82406 5.91398 5.96412 6.14901 6.25809 6.49079 6.70161 6.81967 7.04538 8.09824 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026616 B = 0.003043 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.746969 B = 9198.626626 C = 9960.068742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.089 3.911 4 H 0.083 0.917 5 C -0.131 4.131 6 C -0.136 4.136 7 C 0.077 3.923 8 H 0.074 0.926 9 O -0.354 6.354 10 C 0.519 3.481 11 O -0.569 6.569 12 C -0.292 4.292 13 C -0.039 4.039 14 C -0.203 4.203 15 C 0.105 3.895 16 C -0.458 4.458 17 H 0.093 0.907 18 C 0.035 3.965 19 N -0.791 5.791 20 Si 0.991 3.009 21 H -0.254 1.254 22 H -0.261 1.261 23 H -0.263 1.263 24 C -0.251 4.251 25 C -0.023 4.023 26 C -0.115 4.115 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.300 0.700 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.918 -6.428 -4.573 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.031 3.969 4 H 0.101 0.899 5 C -0.169 4.169 6 C -0.174 4.174 7 C 0.022 3.978 8 H 0.092 0.908 9 O -0.272 6.272 10 C 0.372 3.628 11 O -0.465 6.465 12 C -0.294 4.294 13 C -0.058 4.058 14 C -0.222 4.222 15 C 0.101 3.899 16 C -0.485 4.485 17 H 0.111 0.889 18 C -0.185 4.185 19 N -0.413 5.413 20 Si 0.811 3.189 21 H -0.177 1.177 22 H -0.185 1.185 23 H -0.187 1.187 24 C -0.270 4.270 25 C -0.042 4.042 26 C -0.153 4.153 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.103 0.897 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.762 -6.842 -4.619 14.370 hybrid contribution 0.263 0.561 0.293 0.685 sum -11.500 -6.282 -4.326 13.799 Atomic orbital electron populations 1.22989 0.79416 1.03907 1.00950 1.87877 1.21538 1.27553 1.95069 1.22921 0.93551 0.84742 0.95681 0.89911 1.22897 0.98541 0.98197 0.97249 1.22702 0.96959 0.99837 0.97870 1.23447 0.96593 0.86996 0.90781 0.90785 1.86651 1.36575 1.49746 1.54218 1.21328 0.78147 0.80730 0.82633 1.90661 1.61824 1.64302 1.29727 1.18473 1.01656 1.06181 1.03128 1.20771 0.97804 0.94835 0.92354 1.21014 0.97320 1.01723 1.02115 1.18201 0.90529 0.90219 0.90939 1.20267 1.22821 1.10373 0.94995 0.88925 1.27044 0.91733 1.01169 0.98549 1.69768 1.26984 1.31609 1.12962 0.85006 0.79473 0.76535 0.77930 1.17718 1.18492 1.18734 1.20868 1.01844 1.03189 1.01116 1.20507 0.92978 0.93811 0.96886 1.22199 0.94106 0.98764 1.00221 0.92911 0.88377 0.93247 0.90007 0.88875 0.90976 0.90400 0.86467 0.86760 0.88893 0.86844 0.87164 0.89694 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.87 113.37 1.23 1.55 16 2 O -0.40 -8.36 10.41 -148.98 -1.55 -9.91 16 3 C 0.09 1.85 3.32 31.67 0.11 1.95 16 4 H 0.08 1.55 7.86 -2.39 -0.02 1.53 16 5 C -0.13 -2.55 6.62 31.88 0.21 -2.34 16 6 C -0.14 -3.49 6.56 31.67 0.21 -3.28 16 7 C 0.08 2.36 3.23 31.32 0.10 2.46 16 8 H 0.07 2.47 7.19 -2.39 -0.02 2.46 16 9 O -0.35 -13.61 9.02 -56.83 -0.51 -14.12 16 10 C 0.52 23.17 7.88 70.26 0.55 23.72 16 11 O -0.57 -26.88 15.60 19.79 0.31 -26.57 16 12 C -0.29 -13.91 5.89 -19.95 -0.12 -14.03 16 13 C -0.04 -1.83 9.55 22.26 0.21 -1.62 16 14 C -0.20 -10.21 8.63 22.47 0.19 -10.02 16 15 C 0.10 5.37 5.58 -21.28 -0.12 5.25 16 16 C -0.46 -22.50 9.04 23.46 0.21 -22.28 16 17 H 0.09 4.30 7.91 -2.91 -0.02 4.28 16 18 C 0.04 1.60 5.14 85.36 0.44 2.03 16 19 N -0.79 -37.27 10.95 21.88 0.24 -37.03 16 20 Si 0.99 33.64 29.60 68.60 2.03 35.67 16 21 H -0.25 -8.45 7.11 99.48 0.71 -7.75 16 22 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 23 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 24 C -0.25 -12.20 9.73 22.47 0.22 -11.98 16 25 C -0.02 -1.11 9.52 22.26 0.21 -0.90 16 26 C -0.12 -2.90 6.38 31.32 0.20 -2.70 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.60 8.10 -2.39 -0.02 0.58 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 34 H 0.12 5.00 7.59 -2.91 -0.02 4.98 16 35 H 0.11 5.82 6.16 -2.91 -0.02 5.81 16 36 H 0.30 12.45 8.29 -92.71 -0.77 11.68 16 37 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 38 H 0.11 4.97 7.63 -2.91 -0.02 4.95 16 39 H 0.08 2.19 7.96 -2.38 -0.02 2.17 16 40 H 0.09 2.21 8.07 -2.39 -0.02 2.19 16 Total: -1.00 -58.79 338.45 5.41 -53.38 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 1.03 Total: 30.75 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 3.86 Total: -32.18 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.24 Total: -37.03 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -1.76 Total: -50.60 kcal Atomic # 14 Polarization: 33.64 SS G_CDS: 2.03 Total: 35.67 kcal Total: -58.79 5.41 -53.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282579166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.312 kcal (2) G-P(sol) polarization free energy of solvation -58.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds