Wall clock time and date at job start Tue Mar 31 2020 06:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99840 * 2 1 4 4 H 1.48504 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46519 * 299.99532 * 3 2 1 6 6 H 1.48495 * 109.47110 * 59.99896 * 3 2 1 7 7 C 1.37878 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00179 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47033 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.46736 * 179.97438 * 10 9 7 12 12 C 1.34781 * 119.99511 * 179.97438 * 11 10 9 13 13 O 1.21584 * 119.99970 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99489 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99622 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 H 1.08999 * 110.83340 * 51.28702 * 16 15 14 18 18 C 1.54709 * 110.93899 * 287.54118 * 16 15 14 19 19 O 1.43774 * 102.78465 * 267.12694 * 18 16 15 20 20 C 1.36138 * 109.23882 * 332.25404 * 19 18 16 21 21 C 1.39285 * 129.88544 * 198.39596 * 20 19 18 22 22 C 1.37935 * 120.23778 * 181.01801 * 21 20 19 23 23 C 1.38281 * 120.35216 * 359.95544 * 22 21 20 24 24 C 1.38349 * 119.76951 * 359.88654 * 23 22 21 25 25 C 1.37749 * 119.97627 * 359.95842 * 24 23 22 26 26 H 0.96998 * 120.00482 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47331 * 59.99611 * 9 7 2 28 28 H 1.09004 * 109.46940 * 299.99162 * 9 7 2 29 29 H 1.08994 * 109.47144 * 59.99785 * 10 9 7 30 30 H 1.08994 * 109.46765 * 299.99572 * 10 9 7 31 31 H 0.97003 * 120.00113 * 0.02562 * 11 10 9 32 32 H 0.96996 * 120.00772 * 359.97438 * 14 12 11 33 33 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 34 34 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 35 35 H 1.08994 * 110.74890 * 25.44861 * 18 16 15 36 36 H 1.09005 * 110.74918 * 148.80176 * 18 16 15 37 37 H 1.07996 * 119.87956 * 0.98792 * 21 20 19 38 38 H 1.08001 * 119.82227 * 179.97438 * 22 21 20 39 39 H 1.07994 * 120.11952 * 179.88559 * 23 22 21 40 40 H 1.08001 * 120.01456 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1869 -6.0980 0.0007 13 8 3.4027 -6.0979 -0.0006 14 7 1.5130 -7.2651 0.0008 15 6 2.2456 -8.5339 0.0009 16 6 1.2514 -9.6968 0.0016 17 1 0.5149 -9.5777 -0.7931 18 6 0.5616 -9.8337 1.3796 19 8 1.3979 -10.7842 2.0610 20 6 1.9935 -11.5957 1.1445 21 6 2.5943 -12.8412 1.3111 22 6 3.1623 -13.4882 0.2335 23 6 3.1400 -12.9075 -1.0213 24 6 2.5423 -11.6721 -1.1959 25 6 1.9716 -11.0256 -0.1217 26 1 -0.4851 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8904 29 1 2.8721 -3.6043 0.8904 30 1 2.8720 -3.6043 -0.8895 31 1 0.5429 -4.9308 0.0011 32 1 0.5430 -7.2652 0.0015 33 1 2.8722 -8.5917 -0.8891 34 1 2.8722 -8.5915 0.8909 35 1 0.5552 -8.8787 1.9048 36 1 -0.4512 -10.2209 1.2677 37 1 2.6159 -13.3018 2.2877 38 1 3.6268 -14.4536 0.3704 39 1 3.5875 -13.4165 -1.8621 40 1 2.5229 -11.2147 -2.1741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288266514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:37 Heat of formation + Delta-G solvation = -44.790378 kcal Electronic energy + Delta-G solvation = -21740.787392 eV Core-core repulsion = 18327.574742 eV Total energy + Delta-G solvation = -3413.212650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60061 -39.52629 -37.73038 -35.67374 -34.64648 -32.97953 -32.50939 -30.44942 -29.90550 -29.19284 -26.28786 -24.50070 -23.35588 -22.43933 -21.30283 -21.03646 -20.55255 -18.21621 -17.43262 -17.11646 -16.47918 -16.39167 -16.02432 -15.56673 -15.27646 -14.52412 -14.39919 -14.10195 -14.00178 -13.70620 -13.65888 -13.22508 -12.98315 -12.75971 -12.51388 -12.28603 -12.02900 -11.63316 -11.22054 -11.17878 -11.07656 -11.03699 -10.61506 -10.32741 -9.96571 -9.56941 -9.27067 -9.23452 -9.07653 -8.49426 -8.48277 -8.26269 -6.09439 -4.11853 0.92611 1.05795 2.91631 2.97100 3.28705 3.36290 3.39723 3.42202 3.57056 3.99395 4.16226 4.40048 4.45960 4.51941 4.68988 4.73521 4.83351 5.03647 5.06230 5.15614 5.23053 5.26174 5.27860 5.59168 5.66938 5.76804 5.98335 6.07917 6.15127 6.26582 6.28892 6.39902 6.50993 6.77642 6.86164 6.98721 7.18950 7.56548 7.63105 7.89985 8.25500 8.41141 8.92617 8.98193 9.52987 11.02276 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.045343 B = 0.002287 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.365402 B =12240.283899 C =12473.612299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.596 6.596 14 N -0.755 5.755 15 C 0.155 3.845 16 C -0.089 4.089 17 H 0.105 0.895 18 C 0.053 3.947 19 O -0.301 6.301 20 C 0.111 3.889 21 C -0.142 4.142 22 C -0.083 4.083 23 C -0.151 4.151 24 C -0.063 4.063 25 C -0.167 4.167 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.393 0.607 32 H 0.393 0.607 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 -27.406 -0.608 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.398 3.602 13 O -0.474 6.474 14 N -0.413 5.413 15 C 0.030 3.970 16 C -0.108 4.108 17 H 0.123 0.877 18 C -0.022 4.022 19 O -0.215 6.215 20 C 0.066 3.934 21 C -0.160 4.160 22 C -0.101 4.101 23 C -0.169 4.169 24 C -0.081 4.081 25 C -0.169 4.169 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.226 0.774 32 H 0.227 0.773 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.292 -27.228 -0.357 27.232 hybrid contribution -0.644 1.041 -0.155 1.234 sum -0.351 -26.187 -0.512 26.194 Atomic orbital electron populations 1.69961 1.06088 1.26747 1.50582 1.25002 0.94903 0.99436 0.95030 0.86454 0.80197 0.83313 0.77590 1.19557 1.20956 1.20943 1.21094 0.93326 0.90340 1.51071 0.92150 1.19332 0.94257 0.91102 0.97798 1.21601 0.95649 0.80363 1.00691 1.45537 1.09831 1.05303 1.78477 1.16034 0.85638 0.80417 0.78072 1.90902 1.11776 1.86612 1.58137 1.45113 1.09327 1.04689 1.82162 1.20990 0.93041 0.79868 1.03122 1.21630 0.97815 0.92415 0.98899 0.87689 1.23982 0.93664 0.93150 0.91366 1.86867 1.59036 1.43882 1.31673 1.19629 0.94522 0.91337 0.87921 1.20280 1.03055 0.92315 1.00394 1.20903 0.97564 0.99556 0.92042 1.21050 1.02135 0.96100 0.97635 1.20378 0.95564 0.94372 0.97778 1.20533 1.05577 0.96070 0.94688 0.92923 0.95976 0.95958 0.92756 0.92761 0.77394 0.77327 0.91048 0.91197 0.87060 0.90047 0.85414 0.85140 0.85385 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.14 3.01 5.61 -4.04 -0.02 2.99 16 11 N -0.74 -12.92 5.56 -65.22 -0.36 -13.29 16 12 C 0.70 12.18 8.57 -86.92 -0.74 11.44 16 13 O -0.60 -13.04 16.34 5.29 0.09 -12.95 16 14 N -0.76 -9.16 5.35 -65.22 -0.35 -9.51 16 15 C 0.15 1.77 5.07 -4.04 -0.02 1.75 16 16 C -0.09 -0.75 3.14 -90.41 -0.28 -1.03 16 17 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 18 C 0.05 0.44 7.50 38.06 0.29 0.72 16 19 O -0.30 -3.33 11.10 -20.18 -0.22 -3.55 16 20 C 0.11 1.16 7.04 -38.95 -0.27 0.89 16 21 C -0.14 -1.26 10.06 -39.30 -0.40 -1.65 16 22 C -0.08 -0.61 10.02 -39.68 -0.40 -1.00 16 23 C -0.15 -1.12 10.07 -39.52 -0.40 -1.51 16 24 C -0.06 -0.53 10.03 -39.72 -0.40 -0.92 16 25 C -0.17 -1.59 5.63 -104.10 -0.59 -2.18 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.39 5.79 8.49 -40.82 -0.35 5.45 16 32 H 0.39 3.45 8.49 -40.82 -0.35 3.11 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 35 H 0.11 0.87 7.77 -51.93 -0.40 0.46 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -34.05 343.02 -9.46 -43.52 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.71 Total: 3.17 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -3.79 Total: -3.59 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.02 Total: -48.17 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.14 Total: -16.50 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.05 -9.46 -43.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288266514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.274 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds