Wall clock time and date at job start Tue Mar 31 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 5 5 H 1.48497 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47241 * 119.99858 * 3 2 1 7 7 C 1.37877 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00490 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99828 * 179.72339 * 11 10 9 13 13 O 1.21593 * 119.99949 * 0.28071 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.27942 * 12 11 10 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47198 * 179.97438 * 15 14 12 17 17 H 1.08998 * 110.83675 * 302.73547 * 16 15 14 18 18 C 1.54718 * 110.93933 * 66.45570 * 16 15 14 19 19 O 1.43763 * 102.79607 * 92.79229 * 18 16 15 20 20 C 1.36134 * 109.28603 * 27.55004 * 19 18 16 21 21 C 1.39280 * 129.87714 * 161.43981 * 20 19 18 22 22 C 1.37931 * 120.24568 * 179.60952 * 21 20 19 23 23 C 1.38288 * 120.35157 * 0.02562 * 22 21 20 24 24 C 1.38351 * 119.76306 * 0.15970 * 23 22 21 25 25 C 1.37740 * 119.97769 * 0.02562 * 24 23 22 26 26 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 28 28 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 29 29 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 30 30 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 31 31 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 32 32 H 0.97000 * 119.99549 * 359.97438 * 14 12 11 33 33 H 1.09000 * 109.47602 * 299.99940 * 15 14 12 34 34 H 1.09006 * 109.46868 * 59.99976 * 15 14 12 35 35 H 1.08996 * 110.74288 * 211.12411 * 18 16 15 36 36 H 1.09000 * 110.74458 * 334.46826 * 18 16 15 37 37 H 1.08004 * 119.88289 * 359.58603 * 21 20 19 38 38 H 1.07999 * 119.82772 * 179.97438 * 22 21 20 39 39 H 1.07994 * 120.12038 * 180.17938 * 23 22 21 40 40 H 1.08003 * 120.01307 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0032 12 6 2.1863 -6.0980 -0.0023 13 8 3.4023 -6.0981 -0.0036 14 7 1.5124 -7.2652 -0.0064 15 6 2.2449 -8.5339 -0.0118 16 6 1.2506 -9.6969 -0.0150 17 1 0.5808 -9.6367 0.8428 18 6 0.4511 -9.7372 -1.3390 19 8 1.2276 -10.6325 -2.1528 20 6 1.8981 -11.5032 -1.3493 21 6 2.4802 -12.7315 -1.6531 22 6 3.1262 -13.4556 -0.6729 23 6 3.2016 -12.9698 0.6197 24 6 2.6227 -11.7523 0.9306 25 6 1.9738 -11.0293 -0.0460 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6246 -2.5562 0.8919 29 1 2.8724 -3.6040 0.8910 30 1 2.8711 -3.6048 -0.8890 31 1 0.5425 -4.9308 0.0039 32 1 0.5424 -7.2651 -0.0050 33 1 2.8709 -8.5883 -0.9025 34 1 2.8721 -8.5951 0.8775 35 1 -0.5499 -10.1355 -1.1736 36 1 0.4038 -8.7468 -1.7918 37 1 2.4252 -13.1187 -2.6598 38 1 3.5748 -14.4075 -0.9158 39 1 3.7108 -13.5385 1.3836 40 1 2.6795 -11.3688 1.9386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288266518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:39 Heat of formation + Delta-G solvation = -44.400945 kcal Electronic energy + Delta-G solvation = -21758.811371 eV Core-core repulsion = 18345.615609 eV Total energy + Delta-G solvation = -3413.195763 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.60424 -39.52636 -37.73030 -35.67642 -34.64697 -32.97577 -32.50576 -30.45098 -29.90109 -29.17971 -26.31285 -24.51181 -23.34610 -22.44092 -21.29445 -21.01584 -20.55577 -18.22520 -17.44127 -17.12301 -16.45314 -16.38262 -16.03101 -15.57482 -15.27623 -14.52925 -14.40500 -14.10324 -14.00651 -13.70343 -13.66201 -13.22410 -12.98388 -12.78651 -12.48872 -12.27246 -12.02218 -11.62415 -11.21801 -11.19120 -11.07788 -11.00639 -10.64675 -10.30939 -9.97318 -9.56317 -9.28726 -9.24414 -9.07868 -8.48572 -8.47874 -8.26106 -6.08876 -4.11466 0.92622 1.05891 2.91513 2.96436 3.32006 3.35601 3.38928 3.40795 3.56982 4.00036 4.15839 4.40239 4.45922 4.51973 4.68632 4.73671 4.83195 5.03790 5.06005 5.15323 5.23336 5.25997 5.28208 5.59515 5.66673 5.76758 5.98340 6.08082 6.15117 6.26701 6.28891 6.39957 6.50586 6.77705 6.86463 6.98711 7.18591 7.56369 7.63348 7.90189 8.25672 8.41013 8.92415 8.98069 9.53184 11.02749 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.045317 B = 0.002298 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.719007 B =12181.481394 C =12424.427542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.596 6.596 14 N -0.755 5.755 15 C 0.155 3.845 16 C -0.089 4.089 17 H 0.105 0.895 18 C 0.053 3.947 19 O -0.301 6.301 20 C 0.112 3.888 21 C -0.142 4.142 22 C -0.082 4.082 23 C -0.151 4.151 24 C -0.063 4.063 25 C -0.168 4.168 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.393 0.607 32 H 0.393 0.607 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 -27.412 0.267 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.399 3.601 13 O -0.474 6.474 14 N -0.413 5.413 15 C 0.030 3.970 16 C -0.108 4.108 17 H 0.123 0.877 18 C -0.022 4.022 19 O -0.214 6.214 20 C 0.066 3.934 21 C -0.161 4.161 22 C -0.101 4.101 23 C -0.169 4.169 24 C -0.081 4.081 25 C -0.169 4.169 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.226 0.774 32 H 0.227 0.773 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.272 -27.212 0.019 27.213 hybrid contribution -0.600 1.023 0.163 1.197 sum -0.328 -26.189 0.183 26.192 Atomic orbital electron populations 1.69946 1.06085 1.26962 1.50387 1.24997 0.94908 0.99413 0.95005 0.86559 0.79500 0.82601 0.78797 1.20102 1.21273 1.20103 1.21017 0.93249 0.90369 1.51359 0.92263 1.19319 0.94243 0.91064 0.97789 1.21601 0.95653 0.80363 1.00687 1.45533 1.09833 1.05301 1.78466 1.16033 0.85639 0.80409 0.78066 1.90904 1.11768 1.86610 1.58135 1.45110 1.09317 1.04704 1.82168 1.20977 0.93050 0.79872 1.03098 1.21630 0.97220 0.92268 0.99650 0.87699 1.23982 0.94259 0.94608 0.89347 1.86859 1.58885 1.43261 1.32425 1.19630 0.93856 0.90713 0.89159 1.20280 1.02798 0.92071 1.00913 1.20904 0.97240 0.99341 0.92567 1.21052 1.02243 0.96717 0.96936 1.20374 0.95295 0.93850 0.98563 1.20528 1.05168 0.96367 0.94831 0.92813 0.95980 0.95974 0.92764 0.92753 0.77396 0.77345 0.91225 0.91038 0.90028 0.87086 0.85411 0.85140 0.85387 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 10 C 0.14 3.02 5.61 -4.04 -0.02 2.99 16 11 N -0.74 -12.94 5.56 -65.23 -0.36 -13.30 16 12 C 0.70 12.20 8.57 -86.92 -0.74 11.46 16 13 O -0.60 -13.04 16.34 5.28 0.09 -12.96 16 14 N -0.76 -9.19 5.12 -65.22 -0.33 -9.52 16 15 C 0.15 1.77 5.14 -4.04 -0.02 1.75 16 16 C -0.09 -0.75 3.19 -90.40 -0.29 -1.04 16 17 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 18 C 0.05 0.44 7.37 38.06 0.28 0.72 16 19 O -0.30 -3.35 11.10 -20.17 -0.22 -3.57 16 20 C 0.11 1.17 7.04 -38.96 -0.27 0.90 16 21 C -0.14 -1.27 10.06 -39.31 -0.40 -1.66 16 22 C -0.08 -0.61 10.02 -39.68 -0.40 -1.00 16 23 C -0.15 -1.12 10.07 -39.52 -0.40 -1.51 16 24 C -0.06 -0.52 10.03 -39.72 -0.40 -0.92 16 25 C -0.17 -1.60 5.63 -104.10 -0.59 -2.18 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.39 5.80 8.49 -40.82 -0.35 5.45 16 32 H 0.39 3.46 8.21 -40.82 -0.34 3.13 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.11 0.87 7.42 -51.93 -0.39 0.49 16 37 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -34.03 342.19 -9.44 -43.47 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.68 Total: 3.27 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -3.80 Total: -3.59 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.04 Total: -48.21 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.14 Total: -16.53 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.03 -9.44 -43.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288266518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.928 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds