Wall clock time and date at job start Tue Mar 31 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99847 * 2 1 4 4 O 1.42901 * 109.46832 * 134.99896 * 3 2 1 5 5 C 1.35904 * 116.99755 * 180.02562 * 4 3 2 6 6 C 1.38738 * 120.05356 * 180.02562 * 5 4 3 7 7 C 1.38147 * 119.94317 * 180.02562 * 6 5 4 8 8 C 1.38262 * 120.05531 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.94313 * 179.97438 * 8 7 6 10 10 O 1.45206 * 109.47021 * 89.99897 * 9 8 7 11 11 C 1.34224 * 117.00077 * 180.02562 * 10 9 8 12 12 O 1.20833 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00302 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.47581 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47581 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99778 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99823 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00194 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46719 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47130 * 119.99734 * 19 17 15 22 22 H 1.48501 * 109.47193 * 240.00108 * 19 17 15 23 23 C 1.38271 * 120.11156 * 0.24921 * 8 7 6 24 24 C 1.38149 * 120.05297 * 359.45246 * 23 8 7 25 25 H 1.07995 * 120.00459 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00075 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47050 * 15.00292 * 3 2 1 29 29 H 1.08999 * 109.47442 * 255.00199 * 3 2 1 30 30 H 1.07998 * 120.02813 * 359.97438 * 6 5 4 31 31 H 1.07997 * 119.96887 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47247 * 329.99945 * 9 8 7 33 33 H 1.09001 * 109.47358 * 209.99372 * 9 8 7 34 34 H 1.09009 * 109.46972 * 299.99362 * 13 11 10 35 35 H 1.08995 * 109.47473 * 59.99636 * 13 11 10 36 36 H 1.09005 * 109.46903 * 300.00018 * 14 13 11 37 37 H 1.09000 * 109.47608 * 59.99121 * 14 13 11 38 38 H 0.97002 * 119.99857 * 179.97438 * 18 17 15 39 39 H 1.07996 * 119.96798 * 179.70881 * 23 8 7 40 40 H 1.08001 * 120.02187 * 180.25078 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9090 2.3453 1.0790 6 6 4.9598 2.3524 1.9849 7 6 5.7533 3.4761 2.1118 8 6 5.5006 4.5933 1.3374 9 6 6.3674 5.8179 1.4783 10 8 7.4843 5.7292 0.5546 11 6 8.3578 6.7484 0.5549 12 8 8.1943 7.6840 1.3019 13 6 9.5417 6.7264 -0.3771 14 6 10.3723 7.9956 -0.1767 15 6 11.5559 7.9739 -1.1092 16 1 11.7014 7.1383 -1.7777 17 6 12.4530 9.0209 -1.1089 18 7 12.2756 10.0387 -0.2952 19 14 13.9206 8.9937 -2.2644 20 1 13.8929 7.7468 -3.0704 21 1 13.8603 10.1699 -3.1690 22 1 15.1755 9.0425 -1.4719 23 6 4.4504 4.5908 0.4379 24 6 3.6579 3.4673 0.3029 25 1 -0.5401 0.9352 0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4755 1.4869 -0.9926 30 1 5.1568 1.4804 2.5909 31 1 6.5711 3.4821 2.8171 32 1 6.7443 5.8808 2.4991 33 1 5.7792 6.7074 1.2526 34 1 10.1569 5.8525 -0.1626 35 1 9.1916 6.6800 -1.4083 36 1 9.7575 8.8698 -0.3908 37 1 10.7225 8.0416 0.8545 38 1 12.9069 10.7751 -0.2948 39 1 4.2523 5.4663 -0.1624 40 1 2.8402 3.4645 -0.4027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291767030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:51 Heat of formation + Delta-G solvation = -91.224791 kcal Electronic energy + Delta-G solvation = -21105.734490 eV Core-core repulsion = 17658.215542 eV Total energy + Delta-G solvation = -3447.518948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.53947 -39.86628 -38.07431 -36.02662 -34.55998 -33.57135 -31.60429 -31.29807 -30.92385 -27.47907 -26.40943 -25.26691 -23.06281 -22.25350 -21.33786 -20.42422 -19.78055 -18.53512 -17.31330 -16.88201 -16.46538 -16.36175 -15.95816 -15.83161 -15.04919 -14.82081 -14.46768 -14.35906 -13.90773 -13.76858 -13.35761 -13.05535 -12.98736 -12.47936 -12.25653 -12.13333 -11.84128 -11.65516 -11.35486 -11.13261 -11.10267 -10.97191 -10.61779 -10.35526 -10.04299 -10.03709 -9.91516 -9.56533 -9.24332 -9.15731 -8.41484 -8.37494 -6.01086 -4.05801 1.04151 1.11558 1.54001 2.84873 2.95227 3.09371 3.31227 3.38562 3.42340 3.72413 4.28301 4.44891 4.48297 4.54871 4.60703 4.67506 4.78429 4.89199 5.03787 5.10506 5.25748 5.33391 5.34457 5.40226 5.46361 5.70543 5.78647 5.97422 5.98167 6.04009 6.09214 6.14094 6.21995 6.39423 6.48090 6.66690 6.95962 7.08112 7.67640 7.74411 7.98806 8.27075 8.43285 9.01634 9.58306 11.09961 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036611 B = 0.002117 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.612370 B =13223.540364 C =13564.786619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.156 4.156 3 C 0.085 3.915 4 O -0.312 6.312 5 C 0.134 3.866 6 C -0.154 4.154 7 C -0.055 4.055 8 C -0.126 4.126 9 C 0.108 3.892 10 O -0.362 6.362 11 C 0.456 3.544 12 O -0.507 6.507 13 C -0.103 4.103 14 C 0.032 3.968 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.055 4.055 24 C -0.212 4.212 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.129 0.871 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.769 -18.762 1.936 29.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.011 3.989 4 O -0.226 6.226 5 C 0.089 3.911 6 C -0.172 4.172 7 C -0.073 4.073 8 C -0.127 4.127 9 C 0.034 3.966 10 O -0.280 6.280 11 C 0.300 3.700 12 O -0.393 6.393 13 C -0.141 4.141 14 C -0.005 4.005 15 C -0.566 4.566 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.073 4.073 24 C -0.231 4.231 25 H 0.118 0.882 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.769 -18.492 2.335 29.425 hybrid contribution 0.598 0.289 -0.678 0.950 sum -22.171 -18.203 1.656 28.734 Atomic orbital electron populations 1.23900 0.95419 1.02644 0.98881 1.22674 0.95664 0.97803 1.01265 1.21847 0.87875 0.96866 0.92344 1.86082 1.42137 1.35809 1.58556 1.19033 0.91251 0.85807 0.95042 1.20409 0.95919 0.99964 1.00947 1.20933 0.97513 0.91180 0.97687 1.19512 0.97485 0.95936 0.99730 1.21629 0.85969 0.95499 0.93487 1.86646 1.35399 1.47093 1.58862 1.24789 0.83270 0.79034 0.82945 1.90636 1.74068 1.34844 1.39780 1.21765 0.90795 1.04661 0.96861 1.19029 0.93526 0.89815 0.98129 1.21201 1.08612 1.05413 1.21356 0.92244 1.25023 0.98129 0.95432 0.95778 1.70005 1.36731 1.08707 1.37350 0.86487 0.82475 0.78007 0.80718 1.19654 1.20979 1.20972 1.20898 0.93298 0.97586 0.95489 1.21201 1.03922 0.94160 1.03803 0.88198 0.87379 0.86181 0.91379 0.90827 0.84915 0.84877 0.90593 0.90684 0.88958 0.88981 0.95582 0.95563 0.92918 0.85353 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 14.31 29.01 0.42 -0.39 16 2 C -0.16 -0.94 9.89 -36.03 -0.36 -1.30 16 3 C 0.09 0.60 5.15 36.01 0.19 0.78 16 4 O -0.31 -3.09 10.12 -19.44 -0.20 -3.28 16 5 C 0.13 1.41 6.69 -39.22 -0.26 1.14 16 6 C -0.15 -1.60 9.99 -39.43 -0.39 -1.99 16 7 C -0.06 -0.60 9.69 -39.61 -0.38 -0.98 16 8 C -0.13 -1.52 5.52 -104.60 -0.58 -2.10 16 9 C 0.11 1.50 5.59 36.01 0.20 1.70 16 10 O -0.36 -6.12 10.20 -39.24 -0.40 -6.52 16 11 C 0.46 9.08 7.96 36.00 0.29 9.37 16 12 O -0.51 -11.59 15.73 -18.76 -0.30 -11.89 16 13 C -0.10 -2.14 5.75 -27.89 -0.16 -2.30 16 14 C 0.03 0.85 4.26 -27.89 -0.12 0.73 16 15 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C -0.05 -0.59 9.69 -39.60 -0.38 -0.97 16 24 C -0.21 -2.07 9.04 -39.44 -0.36 -2.43 16 25 H 0.10 0.39 7.90 -52.49 -0.41 -0.03 16 26 H 0.11 0.37 8.06 -52.49 -0.42 -0.05 16 27 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 28 H 0.07 0.40 7.38 -51.93 -0.38 0.02 16 29 H 0.07 0.45 7.67 -51.93 -0.40 0.06 16 30 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 35 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -33.23 352.52 -7.89 -41.12 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.71 Total: -2.60 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.32 Total: -12.29 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.74 Total: -26.34 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.89 Total: -21.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.23 -7.89 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291767030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.105 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds