Wall clock time and date at job start Tue Mar 31 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99847 * 2 1 4 4 O 1.42901 * 109.46832 * 134.99896 * 3 2 1 5 5 C 1.35904 * 116.99755 * 180.02562 * 4 3 2 6 6 C 1.38738 * 120.05356 * 180.02562 * 5 4 3 7 7 C 1.38147 * 119.94317 * 180.02562 * 6 5 4 8 8 C 1.38262 * 120.05531 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.94313 * 179.97438 * 8 7 6 10 10 O 1.45206 * 109.47021 * 89.99897 * 9 8 7 11 11 C 1.34224 * 117.00077 * 180.02562 * 10 9 8 12 12 O 1.20833 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00302 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.47581 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47581 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99778 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99823 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00194 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46719 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47130 * 119.99734 * 19 17 15 22 22 H 1.48501 * 109.47193 * 240.00108 * 19 17 15 23 23 C 1.38271 * 120.11156 * 0.24921 * 8 7 6 24 24 C 1.38149 * 120.05297 * 359.45246 * 23 8 7 25 25 H 1.07995 * 120.00459 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00075 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47050 * 15.00292 * 3 2 1 29 29 H 1.08999 * 109.47442 * 255.00199 * 3 2 1 30 30 H 1.07998 * 120.02813 * 359.97438 * 6 5 4 31 31 H 1.07997 * 119.96887 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47247 * 329.99945 * 9 8 7 33 33 H 1.09001 * 109.47358 * 209.99372 * 9 8 7 34 34 H 1.09009 * 109.46972 * 299.99362 * 13 11 10 35 35 H 1.08995 * 109.47473 * 59.99636 * 13 11 10 36 36 H 1.09005 * 109.46903 * 300.00018 * 14 13 11 37 37 H 1.09000 * 109.47608 * 59.99121 * 14 13 11 38 38 H 0.97002 * 119.99857 * 179.97438 * 18 17 15 39 39 H 1.07996 * 119.96798 * 179.70881 * 23 8 7 40 40 H 1.08001 * 120.02187 * 180.25078 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9090 2.3453 1.0790 6 6 4.9598 2.3524 1.9849 7 6 5.7533 3.4761 2.1118 8 6 5.5006 4.5933 1.3374 9 6 6.3674 5.8179 1.4783 10 8 7.4843 5.7292 0.5546 11 6 8.3578 6.7484 0.5549 12 8 8.1943 7.6840 1.3019 13 6 9.5417 6.7264 -0.3771 14 6 10.3723 7.9956 -0.1767 15 6 11.5559 7.9739 -1.1092 16 1 11.7014 7.1383 -1.7777 17 6 12.4530 9.0209 -1.1089 18 7 12.2756 10.0387 -0.2952 19 14 13.9206 8.9937 -2.2644 20 1 13.8929 7.7468 -3.0704 21 1 13.8603 10.1699 -3.1690 22 1 15.1755 9.0425 -1.4719 23 6 4.4504 4.5908 0.4379 24 6 3.6579 3.4673 0.3029 25 1 -0.5401 0.9352 0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4755 1.4869 -0.9926 30 1 5.1568 1.4804 2.5909 31 1 6.5711 3.4821 2.8171 32 1 6.7443 5.8808 2.4991 33 1 5.7792 6.7074 1.2526 34 1 10.1569 5.8525 -0.1626 35 1 9.1916 6.6800 -1.4083 36 1 9.7575 8.8698 -0.3908 37 1 10.7225 8.0416 0.8545 38 1 12.9069 10.7751 -0.2948 39 1 4.2523 5.4663 -0.1624 40 1 2.8402 3.4645 -0.4027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291767030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:50 Heat of formation + Delta-G solvation = -109.034467 kcal Electronic energy + Delta-G solvation = -21106.506776 eV Core-core repulsion = 17658.215542 eV Total energy + Delta-G solvation = -3448.291233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58042 -41.09270 -38.92682 -37.45279 -35.63941 -35.04447 -33.21980 -32.26225 -32.05440 -28.49044 -27.75326 -26.51289 -24.09998 -23.79631 -22.26360 -21.45586 -20.86895 -19.24806 -19.07654 -18.15055 -17.78575 -17.44479 -17.18507 -16.82800 -16.46833 -16.02779 -15.63848 -15.33706 -15.05557 -14.45978 -14.42824 -14.30362 -14.11979 -13.81678 -13.57692 -13.42182 -13.19271 -12.85353 -12.69795 -12.45768 -12.17295 -12.09781 -12.00661 -11.83502 -11.73999 -11.61932 -11.41662 -11.24103 -10.58058 -10.45074 -10.03331 -9.24047 -8.19531 -6.33162 0.17076 0.32385 1.12399 1.25253 1.44010 1.44874 1.58421 1.82118 2.34620 2.43610 2.78280 3.14366 3.64402 3.68896 3.85516 3.89168 4.01528 4.05168 4.13591 4.25044 4.30723 4.41350 4.45623 4.47423 4.52015 4.58838 4.65792 4.93379 4.95802 5.00952 5.15991 5.27028 5.40083 5.48711 5.54314 5.56375 5.60864 5.62148 5.73614 5.81532 6.14134 6.37062 6.80389 6.87703 7.37096 8.93274 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036611 B = 0.002117 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.612370 B =13223.540364 C =13564.786619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.177 4.177 3 C 0.079 3.921 4 O -0.324 6.324 5 C 0.130 3.870 6 C -0.162 4.162 7 C -0.059 4.059 8 C -0.145 4.145 9 C 0.106 3.894 10 O -0.354 6.354 11 C 0.466 3.534 12 O -0.544 6.544 13 C -0.095 4.095 14 C 0.037 3.963 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.975 3.025 20 H -0.254 1.254 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.060 4.060 24 C -0.211 4.211 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.115 0.885 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.140 0.860 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.525 -20.683 0.520 31.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.195 4.195 3 C 0.005 3.995 4 O -0.238 6.238 5 C 0.085 3.915 6 C -0.181 4.181 7 C -0.077 4.077 8 C -0.145 4.145 9 C 0.033 3.967 10 O -0.271 6.271 11 C 0.311 3.689 12 O -0.434 6.434 13 C -0.132 4.132 14 C 0.000 4.000 15 C -0.581 4.581 16 H 0.095 0.905 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.798 3.202 20 H -0.178 1.178 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.078 4.078 24 C -0.230 4.230 25 H 0.127 0.873 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.157 0.843 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -23.553 -20.457 0.907 31.210 hybrid contribution 0.658 0.794 -0.199 1.051 sum -22.894 -19.663 0.707 30.187 Atomic orbital electron populations 1.24124 0.95013 1.03759 0.96697 1.22690 0.96184 0.97390 1.03280 1.22076 0.87449 0.97869 0.92114 1.86078 1.42721 1.35634 1.59386 1.19224 0.91234 0.86208 0.94882 1.20607 0.95950 1.00230 1.01263 1.21078 0.97922 0.91010 0.97681 1.19445 0.98082 0.95603 1.01380 1.21855 0.85105 0.96912 0.92872 1.86610 1.35717 1.45357 1.59429 1.24485 0.83409 0.78950 0.82041 1.90629 1.75050 1.36428 1.41298 1.21519 0.90978 1.02281 0.98432 1.18813 0.93792 0.91520 0.95872 1.21678 1.08940 1.05934 1.21573 0.90484 1.26095 1.01643 0.94920 0.97544 1.70165 1.38233 1.09698 1.39434 0.85259 0.77941 0.78677 0.78278 1.17752 1.20599 1.20621 1.21089 0.93027 0.98407 0.95241 1.21430 1.04226 0.93414 1.03890 0.87269 0.86096 0.86411 0.90245 0.90128 0.83657 0.83908 0.90424 0.90437 0.86717 0.86697 0.99087 0.99090 0.92764 0.84261 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 14.31 67.78 0.97 -0.18 16 2 C -0.18 -1.87 9.89 25.65 0.25 -1.61 16 3 C 0.08 0.96 5.15 71.24 0.37 1.33 16 4 O -0.32 -5.94 10.12 -92.47 -0.94 -6.88 16 5 C 0.13 2.53 6.69 22.51 0.15 2.68 16 6 C -0.16 -3.17 9.99 22.37 0.22 -2.95 16 7 C -0.06 -1.23 9.69 22.25 0.22 -1.01 16 8 C -0.14 -3.34 5.52 -19.85 -0.11 -3.45 16 9 C 0.11 2.89 5.59 71.24 0.40 3.29 16 10 O -0.35 -11.68 10.20 -51.35 -0.52 -12.20 16 11 C 0.47 18.58 7.96 71.23 0.57 19.15 16 12 O -0.54 -25.60 15.73 21.94 0.35 -25.25 16 13 C -0.09 -3.87 5.75 29.85 0.17 -3.70 16 14 C 0.04 2.03 4.26 29.85 0.13 2.16 16 15 C -0.54 -30.52 9.11 25.60 0.23 -30.28 16 16 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 17 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 18 N -0.94 -58.30 13.29 21.45 0.28 -58.02 16 19 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 20 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 C -0.06 -1.20 9.69 22.26 0.22 -0.98 16 24 C -0.21 -3.73 9.04 22.36 0.20 -3.53 16 25 H 0.11 0.58 7.90 -2.91 -0.02 0.55 16 26 H 0.12 0.55 8.06 -2.91 -0.02 0.53 16 27 H 0.12 1.24 8.06 -2.91 -0.02 1.22 16 28 H 0.08 0.76 7.38 -2.39 -0.02 0.75 16 29 H 0.08 0.84 7.67 -2.39 -0.02 0.82 16 30 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 33 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 34 H 0.11 4.18 8.14 -2.38 -0.02 4.16 16 35 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 36 H -0.01 -0.57 8.10 -2.38 -0.02 -0.58 16 37 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.15 1.86 6.30 -2.91 -0.02 1.84 16 Total: -1.00 -72.46 352.52 6.66 -65.80 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.02 Total: 9.52 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 4.45 Total: -18.87 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.28 Total: -58.02 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -1.11 Total: -44.33 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -72.46 6.66 -65.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291767030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.233 kcal (2) G-P(sol) polarization free energy of solvation -72.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds