Wall clock time and date at job start Tue Mar 31 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99877 * 2 1 4 4 H 1.48493 * 109.47108 * 270.00696 * 3 2 1 5 5 H 1.48498 * 109.47097 * 30.00904 * 3 2 1 6 6 H 1.48499 * 109.46508 * 150.00558 * 3 2 1 7 7 C 1.37878 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99910 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00019 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 C 1.38277 * 119.90242 * 269.73020 * 14 13 12 16 16 C 1.38310 * 120.25917 * 179.70311 * 15 14 13 17 17 C 1.38398 * 119.87438 * 0.55424 * 16 15 14 18 18 C 1.39389 * 119.86787 * 359.75065 * 17 16 15 19 19 C 1.38291 * 119.90051 * 90.00206 * 14 13 12 20 20 N 1.40212 * 119.27549 * 179.91286 * 18 17 16 21 21 C 1.35086 * 118.97928 * 15.50427 * 20 18 17 22 22 O 1.21299 * 120.13172 * 181.66266 * 21 20 18 23 23 C 1.50754 * 119.73194 * 1.67949 * 21 20 18 24 24 O 1.35982 * 120.66396 * 179.81080 * 17 16 15 25 25 H 0.96999 * 120.00009 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 27 27 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 28 28 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 29 29 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 30 30 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 31 31 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 32 32 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 33 33 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 34 34 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 35 35 H 1.08007 * 119.86961 * 359.95672 * 15 14 13 36 36 H 1.08000 * 120.06657 * 180.27084 * 16 15 14 37 37 H 1.08004 * 120.08942 * 0.02562 * 19 14 13 38 38 H 0.97007 * 120.50850 * 195.52299 * 20 18 17 39 39 H 1.09006 * 109.44093 * 208.61869 * 23 21 20 40 40 H 1.08994 * 109.41819 * 88.69898 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0412 -4.0215 -0.0015 13 6 7.5097 -4.0607 -0.0020 14 6 7.9739 -5.4944 -0.0019 15 6 8.1921 -6.1482 1.1969 16 6 8.6123 -7.4659 1.2056 17 6 8.8263 -8.1292 0.0100 18 6 8.6125 -7.4683 -1.1985 19 6 8.1859 -6.1505 -1.2007 20 7 8.8349 -8.1516 -2.4024 21 6 8.9398 -9.4982 -2.3810 22 8 9.1621 -10.1080 -3.4057 23 6 8.7789 -10.2400 -1.0785 24 8 9.2432 -9.4235 -0.0001 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8887 27 1 3.8745 -0.6801 -0.8912 28 1 3.6579 -3.1506 -0.8907 29 1 3.6586 -3.1501 0.8893 30 1 5.9155 -2.1224 0.8873 31 1 5.9142 -2.1231 -0.8927 32 1 5.6663 -4.5372 0.7806 33 1 7.8862 -3.5573 -0.8925 34 1 7.8869 -3.5562 0.8875 35 1 8.0298 -5.6291 2.1300 36 1 8.7776 -7.9749 2.1437 37 1 8.0196 -5.6367 -2.1360 38 1 8.9125 -7.6647 -3.2379 39 1 9.3598 -11.1618 -1.1118 40 1 7.7267 -10.4794 -0.9254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293486549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:03 Heat of formation + Delta-G solvation = -53.058532 kcal Electronic energy + Delta-G solvation = -21574.515189 eV Core-core repulsion = 18160.944006 eV Total energy + Delta-G solvation = -3413.571184 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80114 -39.37746 -38.23421 -36.49686 -35.46403 -33.64517 -32.01590 -30.70615 -30.18805 -28.53393 -26.87830 -24.87137 -23.38606 -22.84600 -22.03665 -20.25052 -19.75402 -19.21332 -18.14572 -17.32807 -16.77871 -16.51929 -15.92971 -15.59049 -15.21351 -14.92357 -14.78832 -14.54005 -14.28030 -14.11150 -13.62681 -13.48493 -13.26353 -12.89625 -12.61728 -12.12640 -11.83513 -11.69457 -11.56866 -11.43407 -11.12870 -10.98037 -10.81133 -10.51432 -9.97808 -9.75482 -9.62656 -9.18738 -8.98901 -8.54331 -8.43657 -8.22536 -6.04447 -4.02384 0.66600 0.88914 1.86627 2.33184 2.84561 3.29368 3.29785 3.37064 3.40078 3.54586 4.21935 4.32950 4.44497 4.46506 4.60386 4.64367 4.82809 4.90952 5.03669 5.16823 5.29315 5.41157 5.47659 5.62405 5.63867 5.72775 5.77244 6.05582 6.12262 6.22532 6.25670 6.39432 6.50068 6.53007 6.87192 6.89126 7.11078 7.31833 7.33510 7.40158 7.48654 7.79673 8.54487 9.01097 9.58009 11.09118 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030354 B = 0.002342 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.232718 B =11951.315540 C =12251.044788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.056 3.944 12 N -0.686 5.686 13 C 0.096 3.904 14 C -0.065 4.065 15 C -0.103 4.103 16 C -0.105 4.105 17 C 0.072 3.928 18 C 0.090 3.910 19 C -0.098 4.098 20 N -0.658 5.658 21 C 0.491 3.509 22 O -0.515 6.515 23 C 0.051 3.949 24 O -0.303 6.303 25 H 0.263 0.737 26 H 0.013 0.987 27 H 0.011 0.989 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.341 0.659 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.417 0.583 39 H 0.145 0.855 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.873 -16.921 1.401 27.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.072 4.072 12 N -0.317 5.317 13 C -0.033 4.033 14 C -0.067 4.067 15 C -0.122 4.122 16 C -0.124 4.124 17 C 0.026 3.974 18 C -0.006 4.006 19 C -0.119 4.119 20 N -0.305 5.305 21 C 0.278 3.722 22 O -0.389 6.389 23 C -0.027 4.027 24 O -0.218 6.218 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.029 0.971 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.159 0.841 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.256 0.744 39 H 0.163 0.837 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 21.907 -17.447 0.396 28.009 hybrid contribution 0.385 1.474 0.272 1.548 sum 22.292 -15.973 0.668 27.432 Atomic orbital electron populations 1.69919 1.06306 1.26852 1.51271 1.25054 0.94742 0.99197 0.94642 0.86759 0.80294 0.83620 0.78476 1.20311 1.21433 1.19086 1.21151 0.89528 0.94460 1.50607 0.91028 1.19542 0.97178 0.92245 0.96109 1.21444 0.90973 0.99697 1.01640 1.22187 0.97751 0.87287 1.00004 1.60591 1.05509 1.15354 1.50204 1.20889 0.89509 0.91260 1.01647 1.19679 0.98425 0.96445 0.92114 1.20958 0.99461 0.93650 0.98156 1.20490 1.00946 0.94976 0.96025 1.18576 1.02076 0.84336 0.92424 1.18013 1.04260 0.93614 0.84666 1.20530 1.00117 0.91924 0.99372 1.43730 1.70316 1.07008 1.09462 1.21563 0.76021 0.82429 0.92193 1.90823 1.46348 1.66732 1.35044 1.23188 1.03829 0.94076 0.81653 1.86240 1.69234 1.19189 1.47133 0.92762 0.96838 0.97062 0.91949 0.92963 0.95585 0.91374 0.84094 0.90084 0.94082 0.84861 0.84274 0.84620 0.74380 0.83737 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 10 C -0.10 -1.90 5.41 -26.73 -0.14 -2.05 16 11 C 0.06 0.84 5.69 -3.82 -0.02 0.82 16 12 N -0.69 -8.55 6.49 -115.05 -0.75 -9.30 16 13 C 0.10 0.94 5.81 -4.97 -0.03 0.91 16 14 C -0.07 -0.59 5.39 -104.59 -0.56 -1.15 16 15 C -0.10 -0.81 9.69 -39.54 -0.38 -1.20 16 16 C -0.11 -0.84 10.00 -39.50 -0.39 -1.23 16 17 C 0.07 0.66 6.44 -39.09 -0.25 0.41 16 18 C 0.09 0.82 6.54 -83.50 -0.55 0.27 16 19 C -0.10 -0.88 9.60 -39.46 -0.38 -1.25 16 20 N -0.66 -5.74 5.47 -9.67 -0.05 -5.79 16 21 C 0.49 4.71 7.94 -10.82 -0.09 4.62 16 22 O -0.51 -6.49 17.95 5.54 0.10 -6.39 16 23 C 0.05 0.35 7.17 36.03 0.26 0.61 16 24 O -0.30 -2.64 10.45 -19.68 -0.21 -2.84 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.34 4.05 8.72 -39.29 -0.34 3.70 16 33 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.42 3.03 8.89 -40.82 -0.36 2.67 16 39 H 0.15 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -33.42 339.27 -8.48 -41.90 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.70 Total: 0.57 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -3.09 Total: -13.02 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.03 Total: -42.28 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.11 Total: -9.24 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.42 -8.48 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293486549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.159 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds