Wall clock time and date at job start Tue Mar 31 2020 06:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99877 * 2 1 4 4 H 1.48493 * 109.47108 * 270.00696 * 3 2 1 5 5 H 1.48498 * 109.47097 * 30.00904 * 3 2 1 6 6 H 1.48499 * 109.46508 * 150.00558 * 3 2 1 7 7 C 1.37878 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99910 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00019 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 C 1.38277 * 119.90242 * 269.73020 * 14 13 12 16 16 C 1.38310 * 120.25917 * 179.70311 * 15 14 13 17 17 C 1.38398 * 119.87438 * 0.55424 * 16 15 14 18 18 C 1.39389 * 119.86787 * 359.75065 * 17 16 15 19 19 C 1.38291 * 119.90051 * 90.00206 * 14 13 12 20 20 N 1.40212 * 119.27549 * 179.91286 * 18 17 16 21 21 C 1.35086 * 118.97928 * 15.50427 * 20 18 17 22 22 O 1.21299 * 120.13172 * 181.66266 * 21 20 18 23 23 C 1.50754 * 119.73194 * 1.67949 * 21 20 18 24 24 O 1.35982 * 120.66396 * 179.81080 * 17 16 15 25 25 H 0.96999 * 120.00009 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 27 27 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 28 28 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 29 29 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 30 30 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 31 31 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 32 32 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 33 33 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 34 34 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 35 35 H 1.08007 * 119.86961 * 359.95672 * 15 14 13 36 36 H 1.08000 * 120.06657 * 180.27084 * 16 15 14 37 37 H 1.08004 * 120.08942 * 0.02562 * 19 14 13 38 38 H 0.97007 * 120.50850 * 195.52299 * 20 18 17 39 39 H 1.09006 * 109.44093 * 208.61869 * 23 21 20 40 40 H 1.08994 * 109.41819 * 88.69898 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0412 -4.0215 -0.0015 13 6 7.5097 -4.0607 -0.0020 14 6 7.9739 -5.4944 -0.0019 15 6 8.1921 -6.1482 1.1969 16 6 8.6123 -7.4659 1.2056 17 6 8.8263 -8.1292 0.0100 18 6 8.6125 -7.4683 -1.1985 19 6 8.1859 -6.1505 -1.2007 20 7 8.8349 -8.1516 -2.4024 21 6 8.9398 -9.4982 -2.3810 22 8 9.1621 -10.1080 -3.4057 23 6 8.7789 -10.2400 -1.0785 24 8 9.2432 -9.4235 -0.0001 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8887 27 1 3.8745 -0.6801 -0.8912 28 1 3.6579 -3.1506 -0.8907 29 1 3.6586 -3.1501 0.8893 30 1 5.9155 -2.1224 0.8873 31 1 5.9142 -2.1231 -0.8927 32 1 5.6663 -4.5372 0.7806 33 1 7.8862 -3.5573 -0.8925 34 1 7.8869 -3.5562 0.8875 35 1 8.0298 -5.6291 2.1300 36 1 8.7776 -7.9749 2.1437 37 1 8.0196 -5.6367 -2.1360 38 1 8.9125 -7.6647 -3.2379 39 1 9.3598 -11.1618 -1.1118 40 1 7.7267 -10.4794 -0.9254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293486549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:02 Heat of formation + Delta-G solvation = -77.509256 kcal Electronic energy + Delta-G solvation = -21575.575452 eV Core-core repulsion = 18160.944006 eV Total energy + Delta-G solvation = -3414.631447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.46099 -40.10978 -38.93967 -37.53590 -36.30099 -35.32137 -33.61019 -31.76365 -30.88597 -29.38249 -28.19622 -25.93426 -24.12765 -23.79379 -23.23882 -21.84972 -20.49093 -19.87632 -18.91328 -18.82699 -17.95766 -17.25867 -16.87985 -16.42042 -16.27392 -16.01691 -15.64630 -15.53750 -15.48921 -14.92015 -14.72025 -14.66882 -14.26459 -14.04994 -13.80370 -13.41578 -13.15789 -12.86202 -12.55241 -12.49950 -12.24477 -12.10346 -11.85915 -11.76645 -11.52698 -11.41655 -11.28692 -11.15838 -10.74762 -9.64806 -9.33454 -8.94989 -8.27801 -6.32161 0.00014 0.24700 1.17699 1.37809 1.39692 1.51788 1.68719 2.23985 2.38059 2.63772 2.91649 3.07638 3.43492 3.59259 3.86662 3.99140 4.11043 4.19331 4.26782 4.29514 4.37680 4.46102 4.57990 4.71550 4.77014 4.83763 4.95372 5.01267 5.01847 5.14017 5.16058 5.41051 5.55102 5.58090 5.63148 5.64971 5.68964 5.73155 6.10890 6.23823 6.31738 6.51136 6.64369 6.76842 7.32511 8.89273 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030354 B = 0.002342 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.232718 B =11951.315540 C =12251.044788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.534 4.534 8 H 0.028 0.972 9 C -0.011 4.011 10 C -0.092 4.092 11 C 0.070 3.930 12 N -0.693 5.693 13 C 0.100 3.900 14 C -0.075 4.075 15 C -0.098 4.098 16 C -0.107 4.107 17 C 0.062 3.938 18 C 0.078 3.922 19 C -0.103 4.103 20 N -0.656 5.656 21 C 0.487 3.513 22 O -0.553 6.553 23 C 0.052 3.948 24 O -0.309 6.309 25 H 0.266 0.734 26 H 0.022 0.978 27 H 0.019 0.981 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.345 0.655 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.140 0.860 38 H 0.420 0.580 39 H 0.167 0.833 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.156 -16.286 2.416 29.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.198 4.198 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.049 4.049 10 C -0.130 4.130 11 C -0.059 4.059 12 N -0.324 5.324 13 C -0.029 4.029 14 C -0.076 4.076 15 C -0.117 4.117 16 C -0.125 4.125 17 C 0.016 3.984 18 C -0.017 4.017 19 C -0.124 4.124 20 N -0.303 5.303 21 C 0.275 3.725 22 O -0.431 6.431 23 C -0.026 4.026 24 O -0.224 6.224 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.163 0.837 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.170 0.830 36 H 0.176 0.824 37 H 0.158 0.842 38 H 0.260 0.740 39 H 0.184 0.816 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 24.210 -16.819 1.427 29.514 hybrid contribution -0.389 1.183 -0.028 1.245 sum 23.821 -15.636 1.399 28.529 Atomic orbital electron populations 1.70087 1.08452 1.28161 1.52858 1.26112 0.95672 1.03821 0.94148 0.85581 0.79562 0.77821 0.79194 1.19230 1.21143 1.16525 1.21554 0.92475 0.92956 1.50192 0.95372 1.19499 0.93579 0.95214 0.96583 1.21267 0.94339 0.96724 1.00656 1.21893 0.94269 0.88990 1.00714 1.60499 1.07476 1.13785 1.50688 1.20890 0.87528 0.91983 1.02453 1.19671 0.99182 0.96195 0.92536 1.21194 0.98336 0.93612 0.98548 1.20748 1.00333 0.95039 0.96420 1.18839 1.02108 0.84669 0.92824 1.18100 1.05023 0.93841 0.84741 1.20643 0.99990 0.91929 0.99806 1.43755 1.69710 1.07024 1.09775 1.22065 0.75121 0.82582 0.92691 1.90802 1.48354 1.67417 1.36488 1.23397 1.05434 0.93989 0.79762 1.86231 1.69516 1.19149 1.47510 0.92559 0.95974 0.96261 0.93573 0.93463 0.94501 0.91012 0.83697 0.89821 0.92677 0.82954 0.82424 0.84175 0.73999 0.81555 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 2 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 3 Si 0.96 43.87 27.47 68.60 1.88 45.75 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 7 C -0.53 -30.97 9.66 25.60 0.25 -30.73 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.78 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.09 -3.43 5.41 30.59 0.17 -3.26 16 11 C 0.07 1.93 5.69 86.30 0.49 2.42 16 12 N -0.69 -15.72 6.49 -517.92 -3.36 -19.08 16 13 C 0.10 1.68 5.81 85.55 0.50 2.18 16 14 C -0.07 -1.17 5.39 -19.84 -0.11 -1.28 16 15 C -0.10 -1.28 9.69 22.30 0.22 -1.07 16 16 C -0.11 -1.44 10.00 22.32 0.22 -1.21 16 17 C 0.06 1.02 6.44 22.59 0.15 1.17 16 18 C 0.08 1.33 6.54 38.14 0.25 1.58 16 19 C -0.10 -1.69 9.60 22.35 0.21 -1.47 16 20 N -0.66 -11.14 5.47 -302.70 -1.66 -12.80 16 21 C 0.49 9.12 7.94 87.63 0.70 9.81 16 22 O -0.55 -14.04 17.95 -3.09 -0.06 -14.09 16 23 C 0.05 0.64 7.17 71.25 0.51 1.15 16 24 O -0.31 -4.86 10.45 -93.35 -0.98 -5.83 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 27 H 0.02 0.84 7.57 -2.38 -0.02 0.83 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.34 7.42 8.72 -89.69 -0.78 6.64 16 33 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 34 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16 35 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.42 6.11 8.89 -92.70 -0.82 5.29 16 39 H 0.17 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -73.20 339.27 -0.33 -73.53 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -0.60 Total: 13.38 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 4.13 Total: -20.71 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -4.72 Total: -92.03 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.03 Total: -19.92 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -73.20 -0.33 -73.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293486549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.983 kcal (2) G-P(sol) polarization free energy of solvation -73.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds