Wall clock time and date at job start Tue Mar 31 2020 06:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00133 * 2 1 4 4 H 1.48493 * 109.47446 * 240.00164 * 3 2 1 5 5 H 1.48506 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47064 * 119.99904 * 3 2 1 7 7 C 1.37875 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99732 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00052 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99566 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00322 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99490 * 179.97438 * 11 10 9 14 14 C 1.46510 * 119.99660 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.59705 * 324.68276 * 14 13 11 16 16 C 1.52876 * 109.59598 * 204.20055 * 14 13 11 17 17 C 1.52151 * 110.79347 * 156.92745 * 16 14 13 18 18 C 1.51438 * 113.45455 * 67.53109 * 17 16 14 19 19 O 1.43139 * 110.94752 * 294.53925 * 18 17 16 20 20 C 1.36145 * 115.59898 * 86.75774 * 19 18 17 21 21 C 1.38909 * 119.81610 * 109.47285 * 20 19 18 22 22 C 1.38158 * 119.67877 * 181.00860 * 21 20 19 23 23 C 1.38288 * 120.23157 * 0.06296 * 22 21 20 24 24 C 1.38385 * 120.07120 * 359.56253 * 23 22 21 25 25 C 1.37940 * 120.35443 * 289.70084 * 20 19 18 26 26 H 0.97002 * 120.00000 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47219 * 59.99765 * 9 7 2 28 28 H 1.09003 * 109.47069 * 300.00001 * 9 7 2 29 29 H 0.96996 * 119.99855 * 359.97438 * 10 9 7 30 30 H 0.96994 * 120.00372 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.21453 * 277.26230 * 16 14 13 32 32 H 1.08994 * 109.21659 * 36.59545 * 16 14 13 33 33 H 1.08996 * 108.68784 * 188.55710 * 17 16 14 34 34 H 1.08998 * 108.68770 * 306.50786 * 17 16 14 35 35 H 1.09004 * 109.18151 * 174.16210 * 18 17 16 36 36 H 1.09003 * 109.18067 * 54.91946 * 18 17 16 37 37 H 1.08001 * 120.15685 * 0.98033 * 21 20 19 38 38 H 1.08005 * 119.88846 * 180.02562 * 22 21 20 39 39 H 1.08003 * 119.96763 * 179.54230 * 23 22 21 40 40 H 1.08005 * 120.18560 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7536 -4.8833 -0.0019 12 8 0.5583 -5.1055 -0.0019 13 7 2.6295 -5.9078 -0.0022 14 6 2.1411 -7.2890 -0.0020 15 1 1.2295 -7.3544 0.5919 16 6 3.2089 -8.2104 0.5880 17 6 2.5824 -9.4886 1.1253 18 6 2.0075 -10.3790 0.0436 19 8 0.9003 -9.7455 -0.6058 20 6 1.2181 -8.9306 -1.6491 21 6 0.9046 -9.3155 -2.9465 22 6 1.2471 -8.4961 -4.0048 23 6 1.8999 -7.2988 -3.7754 24 6 2.2051 -6.9120 -2.4822 25 6 1.8537 -7.7271 -1.4251 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8880 29 1 3.1566 -3.4354 -0.0010 30 1 3.5831 -5.7306 -0.0025 31 1 3.9321 -8.4638 -0.1871 32 1 3.7204 -7.6931 1.3997 33 1 3.3427 -10.0478 1.6704 34 1 1.7847 -9.2219 1.8186 35 1 1.6727 -11.3151 0.4907 36 1 2.7814 -10.5919 -0.6938 37 1 0.3961 -10.2511 -3.1270 38 1 1.0047 -8.7918 -5.0149 39 1 2.1722 -6.6649 -4.6064 40 1 2.7153 -5.9775 -2.3010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336106105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:18 Heat of formation + Delta-G solvation = -45.325080 kcal Electronic energy + Delta-G solvation = -23080.629105 eV Core-core repulsion = 19667.393269 eV Total energy + Delta-G solvation = -3413.235836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.76358 -39.02999 -37.46641 -35.92297 -34.05954 -33.03380 -32.26181 -30.83447 -30.30835 -27.65750 -26.75471 -24.70567 -22.83374 -22.36470 -21.37087 -20.63270 -20.04307 -18.16396 -17.96059 -16.80753 -16.03816 -15.85040 -15.44432 -15.18117 -14.92706 -14.55535 -14.48543 -14.11728 -13.69382 -13.55694 -13.46674 -12.98787 -12.77168 -12.18410 -12.14460 -11.94114 -11.80429 -11.54083 -11.28639 -10.96710 -10.93228 -10.89815 -10.81488 -10.28416 -10.12045 -9.38045 -9.36278 -8.85295 -8.75945 -8.67874 -8.46761 -7.75614 -6.13215 -4.20036 1.25187 1.39655 3.26757 3.26834 3.32185 3.35557 3.43039 3.87438 3.95619 4.34033 4.50868 4.63160 4.74677 4.83670 4.96542 5.07569 5.12060 5.14871 5.22647 5.27698 5.39767 5.48359 5.53533 5.59282 5.67590 5.80743 5.83807 5.99712 6.11873 6.36536 6.47466 6.55764 6.75957 6.91105 7.13261 7.46514 7.53392 7.56661 7.59783 7.92681 8.06172 8.78176 8.96234 9.35694 9.50300 10.96970 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.003614 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.230810 B = 7746.147416 C = 8329.098966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.729 5.729 11 C 0.692 3.308 12 O -0.592 6.592 13 N -0.752 5.752 14 C 0.209 3.791 15 H 0.103 0.897 16 C -0.124 4.124 17 C -0.150 4.150 18 C 0.064 3.936 19 O -0.325 6.325 20 C 0.098 3.902 21 C -0.136 4.136 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.084 4.084 25 C -0.116 4.116 26 H 0.266 0.734 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.386 0.614 30 H 0.392 0.608 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.340 -20.923 -2.931 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.470 6.470 13 N -0.409 5.409 14 C 0.102 3.898 15 H 0.120 0.880 16 C -0.162 4.162 17 C -0.188 4.188 18 C -0.010 4.010 19 O -0.242 6.242 20 C 0.054 3.946 21 C -0.154 4.154 22 C -0.130 4.130 23 C -0.145 4.145 24 C -0.102 4.102 25 C -0.118 4.118 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.218 0.782 30 H 0.225 0.775 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.835 -20.972 -2.832 22.566 hybrid contribution 1.441 1.238 -0.088 1.901 sum 9.276 -19.734 -2.919 22.000 Atomic orbital electron populations 1.69971 1.06089 1.27361 1.48820 1.24940 0.94899 0.99361 0.94783 0.86479 0.79401 0.82393 0.78627 1.20108 1.21080 1.20114 1.21185 0.93193 0.90461 1.53257 0.92032 1.18969 0.87758 0.81014 0.97604 1.45723 1.10729 1.04381 1.77330 1.16161 0.85274 0.81027 0.78361 1.90899 1.14134 1.84047 1.57967 1.45217 1.08787 1.04670 1.82206 1.19678 0.98139 0.80099 0.91881 0.87969 1.21628 0.97735 0.95687 1.01178 1.21639 1.01433 0.96444 0.99287 1.22529 0.88869 0.95123 0.94521 1.86335 1.31912 1.60899 1.45053 1.18353 0.98776 0.90284 0.87142 1.21184 1.02370 1.00765 0.91082 1.20984 0.98811 0.94636 0.98549 1.21225 0.99550 0.96730 0.97033 1.20943 0.98753 0.98898 0.91610 1.20676 0.99748 0.94419 0.96950 0.92409 0.95759 0.95785 0.78243 0.77506 0.91343 0.90138 0.90217 0.90508 0.88477 0.92563 0.85519 0.85828 0.85886 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.27 7.25 5.43 -5.19 -0.03 7.22 16 10 N -0.73 -15.64 5.55 -66.41 -0.37 -16.01 16 11 C 0.69 14.42 7.98 -86.92 -0.69 13.72 16 12 O -0.59 -15.27 16.01 5.29 0.08 -15.18 16 13 N -0.75 -11.30 3.73 -59.41 -0.22 -11.52 16 14 C 0.21 2.96 2.23 -68.67 -0.15 2.81 16 15 H 0.10 1.77 7.34 -51.93 -0.38 1.39 16 16 C -0.12 -1.21 5.16 -27.23 -0.14 -1.35 16 17 C -0.15 -1.28 5.56 -27.95 -0.16 -1.43 16 18 C 0.06 0.58 6.48 36.37 0.24 0.81 16 19 O -0.33 -4.29 9.99 -20.20 -0.20 -4.49 16 20 C 0.10 1.38 5.61 -39.44 -0.22 1.16 16 21 C -0.14 -1.69 10.01 -39.36 -0.39 -2.08 16 22 C -0.11 -1.32 10.03 -39.59 -0.40 -1.72 16 23 C -0.13 -1.65 10.05 -39.51 -0.40 -2.05 16 24 C -0.08 -1.23 9.16 -39.60 -0.36 -1.59 16 25 C -0.12 -1.71 5.04 -104.34 -0.53 -2.23 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.39 6.98 8.34 -40.82 -0.34 6.64 16 30 H 0.39 4.55 8.61 -40.82 -0.35 4.20 16 31 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 32 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.73 8.01 -51.93 -0.42 0.32 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 40 H 0.13 1.89 6.75 -52.48 -0.35 1.54 16 LS Contribution 332.50 15.07 5.01 5.01 Total: -1.00 -34.45 332.50 -9.21 -43.66 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.58 Total: 8.45 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -3.65 Total: -0.21 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.15 Total: -53.17 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.12 Total: -19.67 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.45 -9.21 -43.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336106105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.663 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds