Wall clock time and date at job start Tue Mar 31 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00133 * 2 1 4 4 H 1.48493 * 109.47446 * 240.00164 * 3 2 1 5 5 H 1.48506 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47064 * 119.99904 * 3 2 1 7 7 C 1.37875 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99732 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00052 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99566 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00322 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99490 * 179.97438 * 11 10 9 14 14 C 1.46510 * 119.99660 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.59705 * 324.68276 * 14 13 11 16 16 C 1.52876 * 109.59598 * 204.20055 * 14 13 11 17 17 C 1.52151 * 110.79347 * 156.92745 * 16 14 13 18 18 C 1.51438 * 113.45455 * 67.53109 * 17 16 14 19 19 O 1.43139 * 110.94752 * 294.53925 * 18 17 16 20 20 C 1.36145 * 115.59898 * 86.75774 * 19 18 17 21 21 C 1.38909 * 119.81610 * 109.47285 * 20 19 18 22 22 C 1.38158 * 119.67877 * 181.00860 * 21 20 19 23 23 C 1.38288 * 120.23157 * 0.06296 * 22 21 20 24 24 C 1.38385 * 120.07120 * 359.56253 * 23 22 21 25 25 C 1.37940 * 120.35443 * 289.70084 * 20 19 18 26 26 H 0.97002 * 120.00000 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47219 * 59.99765 * 9 7 2 28 28 H 1.09003 * 109.47069 * 300.00001 * 9 7 2 29 29 H 0.96996 * 119.99855 * 359.97438 * 10 9 7 30 30 H 0.96994 * 120.00372 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.21453 * 277.26230 * 16 14 13 32 32 H 1.08994 * 109.21659 * 36.59545 * 16 14 13 33 33 H 1.08996 * 108.68784 * 188.55710 * 17 16 14 34 34 H 1.08998 * 108.68770 * 306.50786 * 17 16 14 35 35 H 1.09004 * 109.18151 * 174.16210 * 18 17 16 36 36 H 1.09003 * 109.18067 * 54.91946 * 18 17 16 37 37 H 1.08001 * 120.15685 * 0.98033 * 21 20 19 38 38 H 1.08005 * 119.88846 * 180.02562 * 22 21 20 39 39 H 1.08003 * 119.96763 * 179.54230 * 23 22 21 40 40 H 1.08005 * 120.18560 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7536 -4.8833 -0.0019 12 8 0.5583 -5.1055 -0.0019 13 7 2.6295 -5.9078 -0.0022 14 6 2.1411 -7.2890 -0.0020 15 1 1.2295 -7.3544 0.5919 16 6 3.2089 -8.2104 0.5880 17 6 2.5824 -9.4886 1.1253 18 6 2.0075 -10.3790 0.0436 19 8 0.9003 -9.7455 -0.6058 20 6 1.2181 -8.9306 -1.6491 21 6 0.9046 -9.3155 -2.9465 22 6 1.2471 -8.4961 -4.0048 23 6 1.8999 -7.2988 -3.7754 24 6 2.2051 -6.9120 -2.4822 25 6 1.8537 -7.7271 -1.4251 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8880 29 1 3.1566 -3.4354 -0.0010 30 1 3.5831 -5.7306 -0.0025 31 1 3.9321 -8.4638 -0.1871 32 1 3.7204 -7.6931 1.3997 33 1 3.3427 -10.0478 1.6704 34 1 1.7847 -9.2219 1.8186 35 1 1.6727 -11.3151 0.4907 36 1 2.7814 -10.5919 -0.6938 37 1 0.3961 -10.2511 -3.1270 38 1 1.0047 -8.7918 -5.0149 39 1 2.1722 -6.6649 -4.6064 40 1 2.7153 -5.9775 -2.3010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336106105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:17 Heat of formation + Delta-G solvation = -69.787225 kcal Electronic energy + Delta-G solvation = -23081.689863 eV Core-core repulsion = 19667.393269 eV Total energy + Delta-G solvation = -3414.296594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84566 -40.59455 -38.40018 -37.17639 -36.03821 -34.50748 -33.88690 -32.02219 -31.29405 -29.30833 -28.07001 -25.80185 -24.58242 -23.59541 -22.33976 -21.78247 -21.58846 -19.78146 -19.02812 -18.09203 -17.82872 -17.01392 -16.88395 -16.35977 -16.14700 -16.11907 -15.73155 -15.29730 -15.01484 -14.87650 -14.59985 -14.30100 -14.05166 -14.01188 -13.61582 -13.05927 -13.03921 -12.92317 -12.67735 -12.45810 -12.24334 -12.21541 -11.81988 -11.66685 -11.49736 -11.24393 -10.99269 -10.79115 -10.35063 -9.80864 -9.64266 -9.46233 -8.27702 -6.44698 0.25897 0.37319 1.43471 1.48271 1.56202 1.81660 2.22331 2.39853 2.52645 2.92108 3.07142 3.48546 3.61780 3.80307 3.92160 3.97874 4.07141 4.18999 4.34066 4.46350 4.50123 4.57125 4.63285 4.78405 4.80307 4.94865 5.04758 5.06303 5.11297 5.25805 5.26480 5.34363 5.39387 5.48688 5.53516 5.64766 5.70303 5.81474 5.84975 6.24695 6.53977 6.66947 7.24523 7.31289 7.72354 8.84555 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.003614 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.230810 B = 7746.147416 C = 8329.098966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.287 3.713 10 N -0.721 5.721 11 C 0.694 3.306 12 O -0.646 6.646 13 N -0.725 5.725 14 C 0.207 3.793 15 H 0.064 0.936 16 C -0.116 4.116 17 C -0.148 4.148 18 C 0.056 3.944 19 O -0.347 6.347 20 C 0.088 3.912 21 C -0.141 4.141 22 C -0.107 4.107 23 C -0.138 4.138 24 C -0.106 4.106 25 C -0.137 4.137 26 H 0.269 0.731 27 H -0.017 1.017 28 H -0.017 1.017 29 H 0.405 0.595 30 H 0.412 0.588 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.068 0.932 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.140 0.860 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.073 -21.827 -3.368 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.164 3.836 10 N -0.375 5.375 11 C 0.393 3.607 12 O -0.528 6.528 13 N -0.381 5.381 14 C 0.101 3.899 15 H 0.082 0.918 16 C -0.154 4.154 17 C -0.186 4.186 18 C -0.017 4.017 19 O -0.264 6.264 20 C 0.044 3.956 21 C -0.160 4.160 22 C -0.124 4.124 23 C -0.156 4.156 24 C -0.124 4.124 25 C -0.139 4.139 26 H 0.077 0.923 27 H 0.001 0.999 28 H 0.001 0.999 29 H 0.241 0.759 30 H 0.249 0.751 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.087 0.913 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.157 0.843 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.665 -21.935 -3.264 24.607 hybrid contribution 0.540 1.384 0.040 1.486 sum 11.205 -20.551 -3.224 23.628 Atomic orbital electron populations 1.70147 1.08354 1.28633 1.49884 1.26081 0.95757 1.03919 0.93825 0.85180 0.77866 0.76463 0.79519 1.18585 1.21144 1.18604 1.21566 0.94324 0.90375 1.53031 0.89701 1.18383 0.88085 0.83394 0.93769 1.45276 1.10877 1.03665 1.77685 1.16290 0.85086 0.81585 0.77703 1.90862 1.16912 1.84844 1.60158 1.44914 1.09041 1.03974 1.80197 1.19809 0.98311 0.79814 0.91959 0.91814 1.21625 0.96511 0.95367 1.01855 1.21666 1.01865 0.96062 0.99012 1.22845 0.88397 0.95726 0.94762 1.86298 1.34056 1.60903 1.45180 1.18577 0.98555 0.90364 0.88122 1.21513 1.02070 1.01735 0.90636 1.21355 0.97396 0.93719 0.99968 1.21498 0.99634 0.97620 0.96815 1.21014 0.99930 0.98784 0.92717 1.20753 1.01085 0.95218 0.96845 0.92253 0.99899 0.99897 0.75945 0.75051 0.89724 0.88744 0.86710 0.92058 0.86078 0.91324 0.83424 0.82670 0.84256 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.99 42.56 29.54 68.60 2.03 44.58 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.56 -30.61 9.28 25.60 0.24 -30.37 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.29 16.30 5.43 85.63 0.46 16.77 16 10 N -0.72 -31.75 5.55 -482.29 -2.68 -34.43 16 11 C 0.69 30.03 7.98 179.05 1.43 31.46 16 12 O -0.65 -35.37 16.01 -3.98 -0.06 -35.43 16 13 N -0.72 -21.96 3.73 -460.13 -1.72 -23.67 16 14 C 0.21 5.96 2.23 44.50 0.10 6.06 16 15 H 0.06 2.35 7.34 -2.39 -0.02 2.33 16 16 C -0.12 -2.07 5.16 30.27 0.16 -1.91 16 17 C -0.15 -2.23 5.56 29.80 0.17 -2.07 16 18 C 0.06 0.91 6.48 71.47 0.46 1.37 16 19 O -0.35 -8.99 9.99 -95.20 -0.95 -9.94 16 20 C 0.09 2.43 5.61 22.36 0.13 2.56 16 21 C -0.14 -3.34 10.01 22.41 0.22 -3.11 16 22 C -0.11 -2.33 10.03 22.26 0.22 -2.11 16 23 C -0.14 -3.48 10.05 22.32 0.22 -3.25 16 24 C -0.11 -3.15 9.16 22.26 0.20 -2.95 16 25 C -0.14 -4.08 5.04 -19.68 -0.10 -4.18 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 28 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 29 H 0.41 14.47 8.34 -92.71 -0.77 13.70 16 30 H 0.41 9.13 8.61 -92.71 -0.80 8.33 16 31 H 0.08 1.28 7.89 -2.39 -0.02 1.26 16 32 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.13 8.01 -2.39 -0.02 1.11 16 35 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 0.94 7.90 -2.39 -0.02 0.92 16 37 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 40 H 0.12 3.56 6.75 -2.91 -0.02 3.54 16 Total: -1.00 -79.59 332.50 0.78 -78.81 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -0.50 Total: 28.00 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 4.38 Total: 8.94 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -4.11 Total: -114.97 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -1.02 Total: -45.37 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -79.59 0.78 -78.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336106105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.025 kcal (2) G-P(sol) polarization free energy of solvation -79.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds