Wall clock time and date at job start Tue Mar 31 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99623 * 2 1 4 4 H 1.48497 * 109.47058 * 269.99879 * 3 2 1 5 5 H 1.48498 * 109.47200 * 30.00184 * 3 2 1 6 6 H 1.48504 * 109.46890 * 149.99981 * 3 2 1 7 7 C 1.37871 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00464 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99755 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99532 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00109 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99494 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99676 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.72346 * 325.51636 * 14 13 11 16 16 C 1.52867 * 109.60047 * 85.91008 * 14 13 11 17 17 C 1.52150 * 110.81453 * 36.40695 * 16 14 13 18 18 C 1.51432 * 113.45414 * 67.57674 * 17 16 14 19 19 O 1.43152 * 110.92414 * 294.59031 * 18 17 16 20 20 C 1.36121 * 115.60523 * 86.71938 * 19 18 17 21 21 C 1.38915 * 119.78735 * 108.76934 * 20 19 18 22 22 C 1.38164 * 119.68563 * 181.36422 * 21 20 19 23 23 C 1.38287 * 120.23427 * 0.34661 * 22 21 20 24 24 C 1.38396 * 120.06374 * 359.06743 * 23 22 21 25 25 C 1.37956 * 120.40233 * 289.56416 * 20 19 18 26 26 H 0.96997 * 120.00001 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46839 * 60.00753 * 9 7 2 28 28 H 1.08987 * 109.47544 * 300.00379 * 9 7 2 29 29 H 0.96996 * 120.00103 * 0.02562 * 10 9 7 30 30 H 0.96992 * 120.00515 * 0.02562 * 13 11 10 31 31 H 1.08995 * 109.21119 * 156.74752 * 16 14 13 32 32 H 1.08996 * 109.21294 * 276.10953 * 16 14 13 33 33 H 1.08995 * 108.68572 * 188.60420 * 17 16 14 34 34 H 1.09000 * 108.68244 * 306.55150 * 17 16 14 35 35 H 1.08994 * 109.18878 * 54.96139 * 18 17 16 36 36 H 1.09000 * 109.18302 * 174.22203 * 18 17 16 37 37 H 1.08005 * 120.15835 * 1.61429 * 21 20 19 38 38 H 1.07994 * 119.88517 * 180.08676 * 22 21 20 39 39 H 1.08005 * 119.97168 * 179.34893 * 23 22 21 40 40 H 1.07999 * 120.17834 * 180.56306 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5586 -5.1055 -0.0020 13 7 2.6299 -5.9077 -0.0005 14 6 2.1415 -7.2889 -0.0017 15 1 1.2209 -7.3541 0.5782 16 6 1.8754 -7.7376 -1.4386 17 6 2.9091 -7.1509 -2.3884 18 6 4.3038 -7.7012 -2.1759 19 8 4.8138 -7.3201 -0.8937 20 6 4.4877 -8.1458 0.1382 21 6 5.4632 -8.9506 0.7129 22 6 5.1239 -9.8085 1.7414 23 6 3.8184 -9.8722 2.1930 24 6 2.8492 -9.0615 1.6284 25 6 3.1910 -8.2000 0.6059 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8895 29 1 3.1568 -3.4353 -0.0002 30 1 3.5835 -5.7304 0.0006 31 1 1.9191 -8.8255 -1.4886 32 1 0.8824 -7.4044 -1.7402 33 1 2.6023 -7.3629 -3.4126 34 1 2.9355 -6.0699 -2.2513 35 1 4.2735 -8.7888 -2.2405 36 1 4.9634 -7.3151 -2.9530 37 1 6.4830 -8.9030 0.3602 38 1 5.8800 -10.4346 2.1914 39 1 3.5558 -10.5519 2.9901 40 1 1.8309 -9.1032 1.9859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336106106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:21 Heat of formation + Delta-G solvation = -45.258872 kcal Electronic energy + Delta-G solvation = -23234.375242 eV Core-core repulsion = 19821.142277 eV Total energy + Delta-G solvation = -3413.232965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.99254 -38.92220 -37.63276 -35.75696 -33.97899 -32.74823 -32.20674 -31.24766 -30.31658 -27.61473 -26.73039 -24.88517 -23.02843 -22.52799 -21.37573 -20.60191 -19.66169 -18.13922 -18.01868 -16.55586 -16.36451 -15.73093 -15.35728 -15.24478 -15.05708 -14.63241 -14.49403 -14.07093 -13.69227 -13.57338 -13.41508 -13.07908 -12.69725 -12.37465 -12.29804 -11.90536 -11.81187 -11.64360 -11.23576 -10.91905 -10.84572 -10.76628 -10.63805 -10.25301 -10.13773 -9.35918 -9.31719 -9.06694 -8.73009 -8.69013 -8.59089 -7.68213 -6.10848 -4.16915 0.99932 1.10857 3.22819 3.28040 3.33503 3.36073 3.46312 3.83437 4.03259 4.37465 4.45439 4.67926 4.75906 4.79267 4.91088 4.97989 5.13144 5.17842 5.23176 5.25231 5.31334 5.41279 5.49234 5.63543 5.75304 5.89021 5.92185 6.09783 6.18224 6.23103 6.27094 6.35500 6.53425 7.00456 7.22443 7.31868 7.59376 7.62971 7.63593 7.98918 8.12777 8.82875 9.03503 9.40758 9.55310 10.99454 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.003567 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.188447 B = 7847.665103 C = 7875.548006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.730 5.730 11 C 0.694 3.306 12 O -0.604 6.604 13 N -0.744 5.744 14 C 0.210 3.790 15 H 0.097 0.903 16 C -0.129 4.129 17 C -0.153 4.153 18 C 0.071 3.929 19 O -0.328 6.328 20 C 0.106 3.894 21 C -0.134 4.134 22 C -0.107 4.107 23 C -0.128 4.128 24 C -0.090 4.090 25 C -0.119 4.119 26 H 0.265 0.735 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.386 0.614 30 H 0.398 0.602 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.087 -21.526 -0.793 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.381 5.381 11 C 0.394 3.606 12 O -0.484 6.484 13 N -0.402 5.402 14 C 0.103 3.897 15 H 0.115 0.885 16 C -0.168 4.168 17 C -0.191 4.191 18 C -0.004 4.004 19 O -0.245 6.245 20 C 0.062 3.938 21 C -0.153 4.153 22 C -0.125 4.125 23 C -0.147 4.147 24 C -0.109 4.109 25 C -0.120 4.120 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.218 0.782 30 H 0.234 0.766 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.888 -21.361 -0.800 23.552 hybrid contribution 1.160 0.954 -0.037 1.503 sum 11.048 -20.407 -0.838 23.221 Atomic orbital electron populations 1.69982 1.06076 1.27182 1.49156 1.24938 0.94901 0.99358 0.94830 0.86421 0.79630 0.82712 0.78165 1.20512 1.21048 1.19774 1.21246 0.93289 0.90482 1.52851 0.91964 1.18956 0.87769 0.81093 0.97508 1.45707 1.10765 1.04402 1.77267 1.16147 0.85177 0.81082 0.78233 1.90849 1.14262 1.84266 1.58984 1.45279 1.09415 1.03988 1.81513 1.19629 0.94906 0.79602 0.95515 0.88548 1.21774 1.00248 1.00027 0.94772 1.21625 0.94278 1.03417 0.99735 1.22548 0.95440 0.99287 0.83088 1.86269 1.74165 1.48546 1.15478 1.18493 0.91910 0.92223 0.91139 1.21303 0.99786 0.95458 0.98735 1.21043 0.96542 0.98445 0.96461 1.21201 0.93126 0.99892 1.00432 1.21001 1.00037 0.95182 0.94663 1.20484 0.94599 0.98776 0.98181 0.92526 0.95808 0.95828 0.78172 0.76614 0.91688 0.90261 0.90901 0.90033 0.92746 0.88460 0.85272 0.85651 0.85663 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.05 9.28 -34.44 -0.32 -15.37 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.27 7.36 5.43 -5.19 -0.03 7.33 16 10 N -0.73 -16.34 5.55 -66.41 -0.37 -16.71 16 11 C 0.69 14.86 8.46 -86.91 -0.74 14.13 16 12 O -0.60 -15.26 16.00 5.29 0.08 -15.17 16 13 N -0.74 -12.22 3.27 -59.40 -0.19 -12.41 16 14 C 0.21 2.98 2.63 -68.67 -0.18 2.80 16 15 H 0.10 1.51 7.36 -51.93 -0.38 1.13 16 16 C -0.13 -1.63 5.53 -27.23 -0.15 -1.78 16 17 C -0.15 -1.77 5.34 -27.96 -0.15 -1.92 16 18 C 0.07 0.70 6.49 36.37 0.24 0.94 16 19 O -0.33 -3.90 8.36 -20.12 -0.17 -4.07 16 20 C 0.11 1.24 5.26 -39.43 -0.21 1.03 16 21 C -0.13 -1.33 10.01 -39.36 -0.39 -1.72 16 22 C -0.11 -0.92 10.03 -39.59 -0.40 -1.31 16 23 C -0.13 -1.14 10.05 -39.51 -0.40 -1.53 16 24 C -0.09 -0.95 9.70 -39.61 -0.38 -1.33 16 25 C -0.12 -1.44 4.80 -104.33 -0.50 -1.94 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.72 8.14 -51.94 -0.42 0.29 16 29 H 0.39 7.62 8.34 -40.82 -0.34 7.28 16 30 H 0.40 6.08 6.68 -40.82 -0.27 5.80 16 31 H 0.06 0.69 7.89 -51.93 -0.41 0.28 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.16 6.89 -51.93 -0.36 0.80 16 35 H 0.05 0.48 7.90 -51.93 -0.41 0.07 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.13 1.20 7.98 -52.49 -0.42 0.78 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -33.13 329.61 -9.18 -42.31 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.51 Total: 9.68 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -3.70 Total: 1.01 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.17 Total: -54.95 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.08 Total: -19.24 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.13 -9.18 -42.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336106106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.947 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds