Wall clock time and date at job start Tue Mar 31 2020 06:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99623 * 2 1 4 4 H 1.48497 * 109.47058 * 269.99879 * 3 2 1 5 5 H 1.48498 * 109.47200 * 30.00184 * 3 2 1 6 6 H 1.48504 * 109.46890 * 149.99981 * 3 2 1 7 7 C 1.37871 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00464 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99755 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99532 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00109 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99494 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99676 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.72346 * 325.51636 * 14 13 11 16 16 C 1.52867 * 109.60047 * 85.91008 * 14 13 11 17 17 C 1.52150 * 110.81453 * 36.40695 * 16 14 13 18 18 C 1.51432 * 113.45414 * 67.57674 * 17 16 14 19 19 O 1.43152 * 110.92414 * 294.59031 * 18 17 16 20 20 C 1.36121 * 115.60523 * 86.71938 * 19 18 17 21 21 C 1.38915 * 119.78735 * 108.76934 * 20 19 18 22 22 C 1.38164 * 119.68563 * 181.36422 * 21 20 19 23 23 C 1.38287 * 120.23427 * 0.34661 * 22 21 20 24 24 C 1.38396 * 120.06374 * 359.06743 * 23 22 21 25 25 C 1.37956 * 120.40233 * 289.56416 * 20 19 18 26 26 H 0.96997 * 120.00001 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46839 * 60.00753 * 9 7 2 28 28 H 1.08987 * 109.47544 * 300.00379 * 9 7 2 29 29 H 0.96996 * 120.00103 * 0.02562 * 10 9 7 30 30 H 0.96992 * 120.00515 * 0.02562 * 13 11 10 31 31 H 1.08995 * 109.21119 * 156.74752 * 16 14 13 32 32 H 1.08996 * 109.21294 * 276.10953 * 16 14 13 33 33 H 1.08995 * 108.68572 * 188.60420 * 17 16 14 34 34 H 1.09000 * 108.68244 * 306.55150 * 17 16 14 35 35 H 1.08994 * 109.18878 * 54.96139 * 18 17 16 36 36 H 1.09000 * 109.18302 * 174.22203 * 18 17 16 37 37 H 1.08005 * 120.15835 * 1.61429 * 21 20 19 38 38 H 1.07994 * 119.88517 * 180.08676 * 22 21 20 39 39 H 1.08005 * 119.97168 * 179.34893 * 23 22 21 40 40 H 1.07999 * 120.17834 * 180.56306 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5586 -5.1055 -0.0020 13 7 2.6299 -5.9077 -0.0005 14 6 2.1415 -7.2889 -0.0017 15 1 1.2209 -7.3541 0.5782 16 6 1.8754 -7.7376 -1.4386 17 6 2.9091 -7.1509 -2.3884 18 6 4.3038 -7.7012 -2.1759 19 8 4.8138 -7.3201 -0.8937 20 6 4.4877 -8.1458 0.1382 21 6 5.4632 -8.9506 0.7129 22 6 5.1239 -9.8085 1.7414 23 6 3.8184 -9.8722 2.1930 24 6 2.8492 -9.0615 1.6284 25 6 3.1910 -8.2000 0.6059 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8895 29 1 3.1568 -3.4353 -0.0002 30 1 3.5835 -5.7304 0.0006 31 1 1.9191 -8.8255 -1.4886 32 1 0.8824 -7.4044 -1.7402 33 1 2.6023 -7.3629 -3.4126 34 1 2.9355 -6.0699 -2.2513 35 1 4.2735 -8.7888 -2.2405 36 1 4.9634 -7.3151 -2.9530 37 1 6.4830 -8.9030 0.3602 38 1 5.8800 -10.4346 2.1914 39 1 3.5558 -10.5519 2.9901 40 1 1.8309 -9.1032 1.9859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336106106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:20 Heat of formation + Delta-G solvation = -67.447975 kcal Electronic energy + Delta-G solvation = -23235.337433 eV Core-core repulsion = 19821.142277 eV Total energy + Delta-G solvation = -3414.195157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99396 -40.51254 -38.42617 -37.04360 -35.98511 -34.46879 -33.67865 -32.31316 -31.16997 -29.23594 -28.11174 -25.92662 -24.64527 -23.73861 -22.21830 -22.06418 -21.05199 -19.81728 -18.96345 -18.12236 -17.50779 -17.24620 -16.63352 -16.48919 -16.20048 -16.15464 -15.65499 -15.32189 -14.98172 -14.80684 -14.72802 -14.35371 -14.02864 -13.90342 -13.63664 -13.25926 -13.05355 -12.88910 -12.71544 -12.42953 -12.25107 -12.21967 -11.70027 -11.60675 -11.47481 -11.23646 -10.98929 -10.80148 -10.26182 -9.85317 -9.59571 -9.49543 -8.28314 -6.44848 0.21976 0.34254 1.43016 1.46084 1.57181 1.92183 2.24504 2.39808 2.49858 2.97106 3.06395 3.49082 3.56090 3.80403 3.90640 3.98493 4.00155 4.23490 4.34267 4.44975 4.55471 4.59453 4.62850 4.65061 4.85865 4.93787 5.03828 5.08831 5.12729 5.23019 5.26960 5.40396 5.45129 5.49833 5.54571 5.62560 5.70803 5.82375 5.85296 6.27079 6.50708 6.66646 7.24122 7.30149 7.72428 8.84118 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.003567 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.188447 B = 7847.665103 C = 7875.548006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.288 3.712 10 N -0.725 5.725 11 C 0.694 3.306 12 O -0.646 6.646 13 N -0.720 5.720 14 C 0.205 3.795 15 H 0.074 0.926 16 C -0.126 4.126 17 C -0.150 4.150 18 C 0.072 3.928 19 O -0.341 6.341 20 C 0.092 3.908 21 C -0.138 4.138 22 C -0.099 4.099 23 C -0.126 4.126 24 C -0.101 4.101 25 C -0.136 4.136 26 H 0.269 0.731 27 H -0.014 1.014 28 H -0.015 1.015 29 H 0.402 0.598 30 H 0.407 0.593 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.304 -22.644 -0.527 26.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.594 4.594 8 H 0.099 0.901 9 C 0.164 3.836 10 N -0.378 5.378 11 C 0.394 3.606 12 O -0.529 6.529 13 N -0.377 5.377 14 C 0.100 3.900 15 H 0.092 0.908 16 C -0.165 4.165 17 C -0.188 4.188 18 C -0.002 4.002 19 O -0.258 6.258 20 C 0.049 3.951 21 C -0.156 4.156 22 C -0.117 4.117 23 C -0.143 4.143 24 C -0.120 4.120 25 C -0.137 4.137 26 H 0.078 0.922 27 H 0.004 0.996 28 H 0.003 0.997 29 H 0.236 0.764 30 H 0.245 0.755 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.164 0.836 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.171 -22.540 -0.537 26.112 hybrid contribution 0.139 1.156 -0.091 1.168 sum 13.310 -21.384 -0.627 25.196 Atomic orbital electron populations 1.70144 1.08246 1.28576 1.49925 1.26061 0.95798 1.03830 0.93803 0.85132 0.78418 0.76862 0.78634 1.19500 1.20788 1.18076 1.21592 0.94228 0.90542 1.52995 0.90069 1.18394 0.88011 0.83260 0.93888 1.45330 1.10761 1.03925 1.77795 1.16269 0.85086 0.81509 0.77781 1.90815 1.16445 1.84891 1.60787 1.45105 1.09043 1.03951 1.79634 1.19760 0.95075 0.78570 0.96640 0.90824 1.21724 0.99301 1.01493 0.93933 1.21620 0.95462 1.01342 1.00360 1.22651 0.94306 1.00339 0.82920 1.86249 1.74204 1.49245 1.16142 1.18673 0.92034 0.92941 0.91491 1.21551 1.00106 0.95102 0.98837 1.21450 0.97070 0.97749 0.95403 1.21527 0.92868 0.99436 1.00507 1.21184 1.00948 0.95389 0.94471 1.20288 0.94266 0.99534 0.99617 0.92205 0.99610 0.99743 0.76368 0.75542 0.89250 0.92864 0.89217 0.93119 0.91024 0.86482 0.83638 0.82535 0.83034 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 2 C 0.00 0.26 5.46 84.65 0.46 0.73 16 3 Si 0.99 43.32 29.54 68.60 2.03 45.34 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.56 -31.41 9.28 25.60 0.24 -31.17 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.29 16.64 5.43 85.63 0.46 17.11 16 10 N -0.72 -33.73 5.55 -482.29 -2.68 -36.41 16 11 C 0.69 31.22 8.46 179.05 1.51 32.73 16 12 O -0.65 -34.82 16.00 -3.97 -0.06 -34.88 16 13 N -0.72 -24.39 3.27 -460.11 -1.51 -25.90 16 14 C 0.20 6.01 2.63 44.51 0.12 6.12 16 15 H 0.07 2.48 7.36 -2.39 -0.02 2.46 16 16 C -0.13 -3.24 5.53 30.27 0.17 -3.07 16 17 C -0.15 -3.43 5.34 29.80 0.16 -3.27 16 18 C 0.07 1.29 6.49 71.47 0.46 1.75 16 19 O -0.34 -7.57 8.36 -94.92 -0.79 -8.36 16 20 C 0.09 1.98 5.26 22.37 0.12 2.10 16 21 C -0.14 -2.29 10.01 22.41 0.22 -2.07 16 22 C -0.10 -1.32 10.03 22.26 0.22 -1.10 16 23 C -0.13 -1.84 10.05 22.32 0.22 -1.62 16 24 C -0.10 -2.00 9.70 22.25 0.22 -1.78 16 25 C -0.14 -3.18 4.80 -19.68 -0.09 -3.28 16 26 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 27 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 28 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 29 H 0.40 16.01 8.34 -92.71 -0.77 15.24 16 30 H 0.41 12.48 6.68 -92.71 -0.62 11.86 16 31 H 0.09 1.84 7.89 -2.39 -0.02 1.83 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.47 6.89 -2.39 -0.02 1.45 16 35 H 0.07 1.06 7.90 -2.39 -0.02 1.04 16 36 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 40 H 0.13 2.42 7.98 -2.91 -0.02 2.40 16 Total: -1.00 -75.09 329.61 1.44 -73.65 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -0.33 Total: 30.38 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 4.50 Total: 13.20 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -3.90 Total: -119.32 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.86 Total: -43.25 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -75.09 1.44 -73.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336106106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.203 kcal (2) G-P(sol) polarization free energy of solvation -75.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds