Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00506 * 2 1 4 4 H 1.48497 * 109.47259 * 239.99743 * 3 2 1 5 5 H 1.48506 * 109.46643 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47159 * 119.99364 * 3 2 1 7 7 C 1.37881 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00222 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00065 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99906 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00010 * 5.11731 * 11 10 9 13 13 N 1.34777 * 120.00121 * 185.12501 * 11 10 9 14 14 C 1.47226 * 121.31678 * 5.32824 * 13 11 10 15 15 C 1.52793 * 107.92004 * 115.87116 * 14 13 11 16 16 C 1.50602 * 110.84613 * 47.56651 * 15 14 13 17 17 C 1.38971 * 117.63231 * 160.01482 * 16 15 14 18 18 C 1.37914 * 120.57901 * 178.86413 * 17 16 15 19 19 C 1.38266 * 119.82799 * 359.97438 * 18 17 16 20 20 C 1.37960 * 119.71433 * 0.25909 * 19 18 17 21 21 C 1.37674 * 122.84552 * 339.37006 * 16 15 14 22 22 C 1.46679 * 121.31960 * 185.30992 * 13 11 10 23 23 H 1.09003 * 109.43470 * 104.39060 * 22 13 11 24 24 C 1.52993 * 109.43353 * 344.52114 * 22 13 11 25 25 O 1.42899 * 109.47150 * 298.50188 * 24 22 13 26 26 H 0.97007 * 119.99524 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46857 * 59.99814 * 9 7 2 28 28 H 1.09003 * 109.47190 * 300.00328 * 9 7 2 29 29 H 0.97003 * 120.00060 * 359.97438 * 10 9 7 30 30 H 1.08994 * 109.77243 * 235.47752 * 14 13 11 31 31 H 1.08995 * 109.76883 * 356.21779 * 14 13 11 32 32 H 1.08997 * 109.20075 * 287.22055 * 15 14 13 33 33 H 1.08993 * 109.20025 * 167.91721 * 15 14 13 34 34 H 1.08003 * 119.71107 * 358.83544 * 17 16 15 35 35 H 1.08001 * 120.08496 * 179.97438 * 18 17 16 36 36 H 1.07993 * 120.14592 * 180.24007 * 19 18 17 37 37 H 1.08006 * 119.74916 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47491 * 58.50731 * 24 22 13 39 39 H 1.08998 * 109.46963 * 178.50412 * 24 22 13 40 40 H 0.96707 * 113.99955 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0018 11 6 1.7535 -4.8834 0.0015 12 8 0.5622 -5.1069 -0.0937 13 7 2.6248 -5.9063 0.1069 14 6 4.0590 -5.6690 0.3399 15 6 4.4177 -6.2591 1.7029 16 6 3.8671 -7.6536 1.8449 17 6 4.4388 -8.4774 2.8071 18 6 3.9663 -9.7579 3.0049 19 6 2.9143 -10.2284 2.2408 20 6 2.3481 -9.4145 1.2816 21 6 2.8271 -8.1275 1.0774 22 6 2.1815 -7.3000 -0.0057 23 1 2.4667 -7.6936 -0.9813 24 6 0.6602 -7.3639 0.1433 25 8 0.2872 -6.8783 1.4345 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8903 29 1 3.1566 -3.4356 0.0021 30 1 4.6448 -6.1572 -0.4389 31 1 4.2608 -4.5979 0.3363 32 1 4.0013 -5.6276 2.4877 33 1 5.5023 -6.2897 1.8060 34 1 5.2606 -8.1118 3.4050 35 1 4.4168 -10.3914 3.7546 36 1 2.5377 -11.2289 2.3940 37 1 1.5267 -9.7816 0.6842 38 1 0.1936 -6.7479 -0.6254 39 1 0.3275 -8.3960 0.0333 40 1 -0.6657 -6.8896 1.5987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336106892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = -28.571727 kcal Electronic energy + Delta-G solvation = -23592.281903 eV Core-core repulsion = 20179.772547 eV Total energy + Delta-G solvation = -3412.509356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.61316 -38.81485 -36.31902 -35.71839 -34.08257 -32.81969 -32.35586 -31.23156 -29.44797 -27.58842 -26.41839 -24.24642 -23.45071 -22.40926 -21.35399 -20.62066 -18.97045 -17.65519 -17.16850 -16.76349 -15.91552 -15.75171 -15.38896 -14.89807 -14.63813 -14.37051 -14.21270 -13.92926 -13.49032 -13.33017 -13.10532 -13.02940 -12.69547 -12.36215 -12.06069 -11.87501 -11.75607 -11.49430 -11.38484 -10.94143 -10.86314 -10.83919 -10.55390 -10.24373 -9.75085 -9.34183 -8.83686 -8.68495 -8.57726 -8.45361 -8.23549 -7.65776 -6.12399 -4.18609 1.37383 1.37668 3.14494 3.27530 3.32428 3.34329 3.74113 4.00655 4.33074 4.47717 4.62689 4.77717 4.87117 4.90771 4.99724 5.11027 5.23577 5.25236 5.35679 5.40366 5.42691 5.58924 5.70974 5.75688 5.82399 5.94857 5.97903 6.14135 6.28479 6.41859 6.48502 6.61778 6.84241 6.99369 7.21616 7.56823 7.62073 7.63881 7.91489 8.06748 8.18338 8.80460 8.97016 9.39799 9.54700 10.97809 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027731 B = 0.003968 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.440680 B = 7054.505940 C = 7681.865039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.269 3.731 10 N -0.731 5.731 11 C 0.708 3.292 12 O -0.581 6.581 13 N -0.631 5.631 14 C 0.114 3.886 15 C -0.098 4.098 16 C -0.063 4.063 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.109 4.109 21 C -0.071 4.071 22 C 0.206 3.794 23 H 0.085 0.915 24 C 0.079 3.921 25 O -0.549 6.549 26 H 0.266 0.734 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.383 0.617 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.024 0.976 40 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.819 -18.837 2.348 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.148 3.852 10 N -0.385 5.385 11 C 0.410 3.590 12 O -0.460 6.460 13 N -0.370 5.370 14 C -0.010 4.010 15 C -0.136 4.136 16 C -0.063 4.063 17 C -0.141 4.141 18 C -0.143 4.143 19 C -0.144 4.144 20 C -0.128 4.128 21 C -0.072 4.072 22 C 0.101 3.899 23 H 0.103 0.897 24 C 0.001 3.999 25 O -0.353 6.353 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.218 0.782 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.112 0.888 39 H 0.042 0.958 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 8.374 -18.702 2.335 20.624 hybrid contribution 0.392 0.827 0.139 0.926 sum 8.766 -17.874 2.474 20.061 Atomic orbital electron populations 1.69973 1.06069 1.27291 1.48990 1.24931 0.94898 0.99320 0.94805 0.86491 0.79424 0.82427 0.78643 1.20110 1.21098 1.20104 1.21194 0.93168 0.90542 1.53077 0.92142 1.18934 0.87764 0.81018 0.97460 1.45888 1.10659 1.04432 1.77531 1.15860 0.84565 0.80653 0.77905 1.90717 1.14455 1.82485 1.58317 1.47107 1.07068 1.04563 1.78287 1.21537 0.82050 1.01427 0.95996 1.20846 1.00577 0.93222 0.98932 1.19449 0.95591 0.95495 0.95811 1.21134 1.00497 0.94237 0.98201 1.20997 0.97488 0.95984 0.99796 1.20987 0.97054 0.99612 0.96702 1.21004 0.99558 0.93440 0.98772 1.19787 0.95429 0.94404 0.97540 1.19859 0.94000 0.80523 0.95523 0.89716 1.22559 0.92376 0.95633 0.89323 1.86486 1.27622 1.88282 1.32928 0.92465 0.95803 0.95888 0.78247 0.91253 0.89377 0.89903 0.90011 0.86347 0.86410 0.86316 0.86199 0.88791 0.95805 0.78432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.27 7.28 5.43 -5.19 -0.03 7.25 16 10 N -0.73 -16.07 5.45 -66.41 -0.36 -16.44 16 11 C 0.71 14.95 7.94 -86.92 -0.69 14.25 16 12 O -0.58 -13.76 11.28 -18.33 -0.21 -13.97 16 13 N -0.63 -10.45 2.90 -172.48 -0.50 -10.95 16 14 C 0.11 1.47 6.42 -3.75 -0.02 1.45 16 15 C -0.10 -1.18 5.87 -28.04 -0.16 -1.35 16 16 C -0.06 -0.83 5.76 -104.60 -0.60 -1.43 16 17 C -0.12 -1.41 9.59 -39.43 -0.38 -1.79 16 18 C -0.12 -1.32 10.04 -39.69 -0.40 -1.72 16 19 C -0.13 -1.35 10.05 -39.67 -0.40 -1.75 16 20 C -0.11 -1.31 9.07 -39.47 -0.36 -1.67 16 21 C -0.07 -0.97 5.05 -104.56 -0.53 -1.50 16 22 C 0.21 3.03 3.29 -68.93 -0.23 2.80 16 23 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 24 C 0.08 1.22 5.38 37.15 0.20 1.42 16 25 O -0.55 -9.72 11.33 -58.85 -0.67 -10.38 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.38 7.35 5.90 -40.82 -0.24 7.11 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.12 5.69 -51.93 -0.30 0.82 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.12 1.11 8.05 -52.48 -0.42 0.69 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.25 6.69 -52.48 -0.35 0.90 16 38 H 0.09 1.69 5.75 -52.40 -0.30 1.39 16 39 H 0.02 0.30 6.68 -51.93 -0.35 -0.05 16 40 H 0.37 5.39 9.12 45.56 0.42 5.81 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -33.66 322.47 -9.63 -43.29 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -4.46 Total: 10.68 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -4.02 Total: 2.49 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.13 Total: -52.92 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.87 Total: -24.35 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.66 -9.63 -43.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336106892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.722 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds