Wall clock time and date at job start Tue Mar 31 2020 06:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00506 * 2 1 4 4 H 1.48497 * 109.47259 * 239.99743 * 3 2 1 5 5 H 1.48506 * 109.46643 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47159 * 119.99364 * 3 2 1 7 7 C 1.37881 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00222 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00065 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99906 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00010 * 5.11731 * 11 10 9 13 13 N 1.34777 * 120.00121 * 185.12501 * 11 10 9 14 14 C 1.47226 * 121.31678 * 5.32824 * 13 11 10 15 15 C 1.52793 * 107.92004 * 115.87116 * 14 13 11 16 16 C 1.50602 * 110.84613 * 47.56651 * 15 14 13 17 17 C 1.38971 * 117.63231 * 160.01482 * 16 15 14 18 18 C 1.37914 * 120.57901 * 178.86413 * 17 16 15 19 19 C 1.38266 * 119.82799 * 359.97438 * 18 17 16 20 20 C 1.37960 * 119.71433 * 0.25909 * 19 18 17 21 21 C 1.37674 * 122.84552 * 339.37006 * 16 15 14 22 22 C 1.46679 * 121.31960 * 185.30992 * 13 11 10 23 23 H 1.09003 * 109.43470 * 104.39060 * 22 13 11 24 24 C 1.52993 * 109.43353 * 344.52114 * 22 13 11 25 25 O 1.42899 * 109.47150 * 298.50188 * 24 22 13 26 26 H 0.97007 * 119.99524 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46857 * 59.99814 * 9 7 2 28 28 H 1.09003 * 109.47190 * 300.00328 * 9 7 2 29 29 H 0.97003 * 120.00060 * 359.97438 * 10 9 7 30 30 H 1.08994 * 109.77243 * 235.47752 * 14 13 11 31 31 H 1.08995 * 109.76883 * 356.21779 * 14 13 11 32 32 H 1.08997 * 109.20075 * 287.22055 * 15 14 13 33 33 H 1.08993 * 109.20025 * 167.91721 * 15 14 13 34 34 H 1.08003 * 119.71107 * 358.83544 * 17 16 15 35 35 H 1.08001 * 120.08496 * 179.97438 * 18 17 16 36 36 H 1.07993 * 120.14592 * 180.24007 * 19 18 17 37 37 H 1.08006 * 119.74916 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47491 * 58.50731 * 24 22 13 39 39 H 1.08998 * 109.46963 * 178.50412 * 24 22 13 40 40 H 0.96707 * 113.99955 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0018 11 6 1.7535 -4.8834 0.0015 12 8 0.5622 -5.1069 -0.0937 13 7 2.6248 -5.9063 0.1069 14 6 4.0590 -5.6690 0.3399 15 6 4.4177 -6.2591 1.7029 16 6 3.8671 -7.6536 1.8449 17 6 4.4388 -8.4774 2.8071 18 6 3.9663 -9.7579 3.0049 19 6 2.9143 -10.2284 2.2408 20 6 2.3481 -9.4145 1.2816 21 6 2.8271 -8.1275 1.0774 22 6 2.1815 -7.3000 -0.0057 23 1 2.4667 -7.6936 -0.9813 24 6 0.6602 -7.3639 0.1433 25 8 0.2872 -6.8783 1.4345 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8903 29 1 3.1566 -3.4356 0.0021 30 1 4.6448 -6.1572 -0.4389 31 1 4.2608 -4.5979 0.3363 32 1 4.0013 -5.6276 2.4877 33 1 5.5023 -6.2897 1.8060 34 1 5.2606 -8.1118 3.4050 35 1 4.4168 -10.3914 3.7546 36 1 2.5377 -11.2289 2.3940 37 1 1.5267 -9.7816 0.6842 38 1 0.1936 -6.7479 -0.6254 39 1 0.3275 -8.3960 0.0333 40 1 -0.6657 -6.8896 1.5987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336106892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:57 Heat of formation + Delta-G solvation = -51.838037 kcal Electronic energy + Delta-G solvation = -23593.290806 eV Core-core repulsion = 20179.772547 eV Total energy + Delta-G solvation = -3413.518259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.84728 -40.07503 -37.68113 -36.95723 -35.98429 -34.35976 -33.82320 -32.43692 -30.42217 -29.32164 -27.87790 -25.52533 -24.69747 -24.02466 -22.36919 -21.96169 -20.49800 -19.07162 -18.47711 -18.15949 -17.59531 -16.91691 -16.66808 -16.53776 -15.97560 -15.69813 -15.55767 -15.12043 -14.79674 -14.67309 -14.42506 -14.22525 -14.01479 -13.85125 -13.64193 -13.22556 -13.06614 -12.87793 -12.67872 -12.54247 -12.34040 -12.20177 -11.85406 -11.61592 -11.44859 -11.18581 -10.76147 -10.15254 -9.76630 -9.63304 -9.44827 -9.35157 -8.26746 -6.43069 0.48461 0.51665 1.43454 1.48189 1.55896 1.74694 2.35642 2.39891 2.86701 3.08018 3.15890 3.49019 3.68301 3.80026 3.96354 4.13098 4.15464 4.30038 4.31674 4.43919 4.55575 4.57026 4.69116 4.78061 4.83184 4.92678 5.01796 5.08613 5.17303 5.23550 5.31427 5.46338 5.53811 5.64199 5.66576 5.71284 5.84228 5.89877 6.13418 6.20907 6.68636 6.97039 7.25044 7.27863 7.82893 8.85341 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027731 B = 0.003968 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.440680 B = 7054.505940 C = 7681.865039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.292 3.708 10 N -0.729 5.729 11 C 0.701 3.299 12 O -0.615 6.615 13 N -0.625 5.625 14 C 0.106 3.894 15 C -0.092 4.092 16 C -0.085 4.085 17 C -0.129 4.129 18 C -0.126 4.126 19 C -0.127 4.127 20 C -0.119 4.119 21 C -0.091 4.091 22 C 0.199 3.801 23 H 0.105 0.895 24 C 0.080 3.920 25 O -0.572 6.572 26 H 0.268 0.732 27 H -0.015 1.015 28 H -0.019 1.019 29 H 0.398 0.602 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.131 0.869 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.662 -19.916 2.923 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.099 0.901 9 C 0.169 3.831 10 N -0.385 5.385 11 C 0.403 3.597 12 O -0.496 6.496 13 N -0.362 5.362 14 C -0.016 4.016 15 C -0.130 4.130 16 C -0.085 4.085 17 C -0.147 4.147 18 C -0.144 4.144 19 C -0.145 4.145 20 C -0.137 4.137 21 C -0.091 4.091 22 C 0.095 3.905 23 H 0.123 0.877 24 C 0.003 3.997 25 O -0.378 6.378 26 H 0.077 0.923 27 H 0.003 0.997 28 H -0.001 1.001 29 H 0.235 0.765 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 11.280 -19.844 2.912 23.011 hybrid contribution -0.522 0.998 -0.015 1.126 sum 10.757 -18.847 2.897 21.893 Atomic orbital electron populations 1.70142 1.08246 1.28558 1.49930 1.26047 0.95771 1.03780 0.93848 0.85214 0.77930 0.76615 0.79482 1.18613 1.21038 1.18710 1.21566 0.94183 0.90628 1.52988 0.90126 1.18315 0.87972 0.83228 0.93628 1.45521 1.10604 1.04006 1.78341 1.16067 0.84792 0.81105 0.77752 1.90722 1.16253 1.83157 1.59466 1.47095 1.08039 1.04290 1.76807 1.21856 0.79986 1.02010 0.97747 1.20819 1.02474 0.92449 0.97272 1.19657 0.96080 0.96103 0.96649 1.21409 1.00931 0.94485 0.97828 1.21392 0.97104 0.95971 0.99886 1.21343 0.96758 1.00558 0.95856 1.21200 1.00002 0.93074 0.99454 1.19767 0.96313 0.95068 0.97999 1.20106 0.93522 0.79553 0.97332 0.87742 1.22536 0.93119 0.96639 0.87409 1.86439 1.28569 1.88780 1.33986 0.92277 0.99692 1.00126 0.76515 0.88405 0.89377 0.92099 0.86700 0.84396 0.83746 0.83795 0.85118 0.91997 0.92442 0.77508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.98 42.77 29.54 68.60 2.03 44.80 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.56 -30.95 9.28 25.60 0.24 -30.72 16 8 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.29 16.61 5.43 85.64 0.47 17.08 16 10 N -0.73 -33.15 5.45 -482.29 -2.63 -35.77 16 11 C 0.70 30.69 7.94 179.06 1.42 32.11 16 12 O -0.61 -30.86 11.28 18.60 0.21 -30.65 16 13 N -0.62 -20.66 2.90 -817.86 -2.37 -23.03 16 14 C 0.11 2.61 6.42 86.17 0.55 3.16 16 15 C -0.09 -2.08 5.87 29.75 0.17 -1.90 16 16 C -0.08 -2.06 5.76 -19.85 -0.11 -2.18 16 17 C -0.13 -2.59 9.59 22.37 0.21 -2.38 16 18 C -0.13 -2.25 10.04 22.20 0.22 -2.03 16 19 C -0.13 -2.35 10.05 22.21 0.22 -2.13 16 20 C -0.12 -2.61 9.07 22.34 0.20 -2.41 16 21 C -0.09 -2.35 5.05 -19.82 -0.10 -2.45 16 22 C 0.20 5.74 3.29 44.24 0.15 5.89 16 23 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 24 C 0.08 2.53 5.38 71.98 0.39 2.92 16 25 O -0.57 -20.89 11.33 -126.40 -1.43 -22.32 16 26 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 27 H -0.01 -0.95 8.14 -2.38 -0.02 -0.97 16 28 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 29 H 0.40 15.36 5.90 -92.71 -0.55 14.81 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 2.13 5.69 -2.39 -0.01 2.11 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.11 1.78 8.10 -2.39 -0.02 1.76 16 34 H 0.14 2.14 8.05 -2.91 -0.02 2.12 16 35 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.13 2.44 6.69 -2.91 -0.02 2.42 16 38 H 0.06 2.35 5.75 -9.85 -0.06 2.30 16 39 H 0.06 1.40 6.68 -2.39 -0.02 1.38 16 40 H 0.38 11.64 9.12 -74.05 -0.68 10.96 16 Total: -1.00 -76.09 322.47 0.40 -75.68 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -0.19 Total: 32.15 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 4.50 Total: 15.72 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -4.71 Total: -115.39 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.22 Total: -52.97 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -76.09 0.40 -75.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336106892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.845 kcal (2) G-P(sol) polarization free energy of solvation -76.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds