Wall clock time and date at job start Tue Mar 31 2020 06:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00056 * 2 1 4 4 H 1.48499 * 109.47143 * 240.00510 * 3 2 1 5 5 H 1.48498 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46966 * 120.00532 * 3 2 1 7 7 C 1.37883 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99768 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99945 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00416 * 179.97438 * 10 9 7 12 12 O 1.21596 * 119.99555 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00525 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00248 * 180.02562 * 13 11 10 15 15 H 1.08995 * 108.53583 * 326.95345 * 14 13 11 16 16 C 1.52159 * 108.68899 * 208.91471 * 14 13 11 17 17 C 1.52878 * 110.79434 * 171.46061 * 16 14 13 18 18 C 1.51643 * 108.69734 * 83.28913 * 17 16 14 19 19 C 1.38033 * 119.98750 * 112.45073 * 18 17 16 20 20 C 1.38386 * 119.63706 * 177.82429 * 19 18 17 21 21 C 1.38288 * 120.08148 * 359.97438 * 20 19 18 22 22 C 1.38169 * 120.22035 * 0.51058 * 21 20 19 23 23 C 1.37940 * 119.47298 * 291.21546 * 18 17 16 24 24 O 1.36152 * 120.33409 * 2.77375 * 23 18 17 25 25 C 1.43135 * 115.60533 * 70.25741 * 24 23 18 26 26 H 0.97003 * 120.00121 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47108 * 59.99943 * 9 7 2 28 28 H 1.08998 * 109.47342 * 299.99870 * 9 7 2 29 29 H 0.97005 * 120.00034 * 359.97438 * 10 9 7 30 30 H 0.97005 * 119.99926 * 359.97438 * 13 11 10 31 31 H 1.09005 * 109.20942 * 51.12055 * 16 14 13 32 32 H 1.08999 * 109.21632 * 291.79932 * 16 14 13 33 33 H 1.09005 * 109.60095 * 323.52703 * 17 16 14 34 34 H 1.08997 * 109.73079 * 203.13509 * 17 16 14 35 35 H 1.08001 * 120.18136 * 357.82428 * 19 18 17 36 36 H 1.08008 * 119.96251 * 180.02562 * 20 19 18 37 37 H 1.07997 * 119.89176 * 180.49311 * 21 20 19 38 38 H 1.08007 * 120.16188 * 179.88525 * 22 21 20 39 39 H 1.09003 * 109.18116 * 33.59740 * 25 24 23 40 40 H 1.09006 * 109.18466 * 152.83669 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0015 12 8 0.5582 -5.1056 -0.0006 13 7 2.6294 -5.9078 -0.0021 14 6 2.1411 -7.2890 -0.0023 15 1 1.2091 -7.3271 0.5615 16 6 3.1684 -8.1694 0.6940 17 6 2.6180 -9.5794 0.9091 18 6 2.8185 -10.3790 -0.3637 19 6 3.7053 -11.4366 -0.3815 20 6 3.8494 -12.1896 -1.5336 21 6 3.1075 -11.8826 -2.6595 22 6 2.2275 -10.8175 -2.6435 23 6 2.0903 -10.0561 -1.4898 24 8 1.2398 -8.9931 -1.4774 25 6 1.8610 -7.7044 -1.4313 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 3.1566 -3.4355 -0.0028 30 1 3.5832 -5.7306 -0.0031 31 1 3.4204 -7.7314 1.6598 32 1 4.0677 -8.2252 0.0806 33 1 1.5547 -9.5251 1.1431 34 1 3.1489 -10.0603 1.7306 35 1 4.2836 -11.6752 0.4989 36 1 4.5415 -13.0185 -1.5532 37 1 3.2165 -12.4772 -3.5545 38 1 1.6499 -10.5775 -3.5240 39 1 2.7995 -7.7392 -1.9847 40 1 1.2002 -6.9714 -1.8944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338748601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:14 Heat of formation + Delta-G solvation = -49.605008 kcal Electronic energy + Delta-G solvation = -22456.594983 eV Core-core repulsion = 19043.173555 eV Total energy + Delta-G solvation = -3413.421428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79293 -39.28422 -37.56801 -35.85523 -34.13264 -33.48458 -32.32118 -30.54750 -30.40219 -27.65444 -26.75082 -25.00975 -22.90836 -22.62304 -21.24942 -20.85975 -20.15607 -18.33663 -17.81162 -16.86182 -16.02242 -15.90610 -15.61737 -15.40514 -14.96327 -14.65531 -14.44246 -14.09620 -13.88863 -13.62458 -13.46227 -13.02619 -12.88581 -12.37033 -12.16538 -11.98423 -11.91716 -11.88991 -11.30171 -10.98593 -10.91461 -10.86866 -10.71826 -10.40597 -10.29965 -9.44862 -9.38455 -9.07605 -8.82083 -8.71154 -8.68549 -7.78650 -6.14981 -4.21797 0.99729 1.09145 3.07441 3.25828 3.30422 3.31858 3.38119 3.85514 3.93281 4.32984 4.39922 4.48389 4.68656 4.75442 4.91038 4.95614 5.01867 5.11247 5.20970 5.22288 5.25807 5.34136 5.41786 5.52089 5.68455 5.75754 5.82451 5.96352 6.05594 6.13408 6.22975 6.32365 6.51088 6.78880 7.09126 7.39111 7.49920 7.54296 7.57104 7.89650 8.03699 8.75694 8.92372 9.31312 9.47264 10.95201 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041418 B = 0.002702 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.868806 B =10360.935794 C =10491.639171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.728 5.728 11 C 0.691 3.309 12 O -0.597 6.597 13 N -0.752 5.752 14 C 0.136 3.864 15 H 0.095 0.905 16 C -0.124 4.124 17 C -0.075 4.075 18 C -0.114 4.114 19 C -0.102 4.102 20 C -0.131 4.131 21 C -0.110 4.110 22 C -0.132 4.132 23 C 0.100 3.900 24 O -0.321 6.321 25 C 0.060 3.940 26 H 0.266 0.734 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.386 0.614 30 H 0.392 0.608 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.055 0.945 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.802 -23.198 -1.830 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.380 5.380 11 C 0.391 3.609 12 O -0.475 6.475 13 N -0.410 5.410 14 C 0.030 3.970 15 H 0.113 0.887 16 C -0.162 4.162 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.149 4.149 21 C -0.129 4.129 22 C -0.150 4.150 23 C 0.057 3.943 24 O -0.236 6.236 25 C -0.016 4.016 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.218 0.782 30 H 0.226 0.774 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.073 0.927 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.261 -23.204 -1.834 25.051 hybrid contribution 1.528 1.143 -0.050 1.909 sum 10.789 -22.061 -1.883 24.630 Atomic orbital electron populations 1.69965 1.06090 1.27400 1.48791 1.24944 0.94916 0.99391 0.94765 0.86471 0.79398 0.82347 0.78640 1.20102 1.21070 1.20103 1.21186 0.93210 0.90454 1.53300 0.92019 1.18984 0.87758 0.81014 0.97647 1.45734 1.10822 1.04381 1.77065 1.16201 0.85264 0.81109 0.78354 1.90896 1.14098 1.84092 1.58448 1.45202 1.08907 1.04537 1.82396 1.20798 0.99107 0.80663 0.96455 0.88662 1.21640 0.98340 0.94488 1.01689 1.20684 1.02878 0.93685 0.94057 1.20306 0.97603 0.97822 0.95702 1.20965 0.97955 0.94686 0.98445 1.21180 1.00249 1.00138 0.93323 1.21027 0.96203 0.97030 0.98591 1.21340 0.99292 0.97195 0.97210 1.18605 0.92483 0.90684 0.92573 1.86363 1.31247 1.12738 1.93255 1.23036 0.98882 0.82733 0.96944 0.92385 0.95710 0.95710 0.78154 0.77447 0.90101 0.91414 0.89756 0.90227 0.85614 0.85909 0.85714 0.85245 0.92657 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 9 C 0.27 7.14 5.43 -5.19 -0.03 7.11 16 10 N -0.73 -15.40 5.55 -66.42 -0.37 -15.76 16 11 C 0.69 14.02 8.46 -86.92 -0.74 13.28 16 12 O -0.60 -14.78 15.95 5.28 0.08 -14.69 16 13 N -0.75 -10.87 4.99 -59.89 -0.30 -11.17 16 14 C 0.14 1.81 2.28 -69.16 -0.16 1.66 16 15 H 0.10 1.53 7.32 -51.93 -0.38 1.15 16 16 C -0.12 -1.21 5.08 -27.22 -0.14 -1.35 16 17 C -0.08 -0.71 5.55 -27.48 -0.15 -0.86 16 18 C -0.11 -1.17 5.07 -104.34 -0.53 -1.70 16 19 C -0.10 -0.87 9.69 -39.60 -0.38 -1.25 16 20 C -0.13 -1.03 10.05 -39.51 -0.40 -1.43 16 21 C -0.11 -0.93 10.03 -39.59 -0.40 -1.33 16 22 C -0.13 -1.37 10.01 -39.36 -0.39 -1.76 16 23 C 0.10 1.20 5.61 -39.45 -0.22 0.98 16 24 O -0.32 -4.49 9.99 -20.22 -0.20 -4.69 16 25 C 0.06 0.81 5.99 36.36 0.22 1.03 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.39 6.92 8.34 -40.82 -0.34 6.58 16 30 H 0.39 4.44 8.62 -40.82 -0.35 4.09 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 33 H 0.08 0.89 7.88 -51.93 -0.41 0.49 16 34 H 0.08 0.58 7.93 -51.93 -0.41 0.17 16 35 H 0.13 0.79 7.98 -52.49 -0.42 0.37 16 36 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.05 0.66 7.90 -51.93 -0.41 0.25 16 40 H 0.11 1.68 8.08 -51.93 -0.42 1.26 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -33.22 335.06 -9.38 -42.59 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.62 Total: 7.34 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -3.73 Total: 0.96 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.07 Total: -52.40 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.12 Total: -19.38 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.22 -9.38 -42.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338748601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.011 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds