Wall clock time and date at job start Tue Mar 31 2020 06:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00056 * 2 1 4 4 H 1.48499 * 109.47143 * 240.00510 * 3 2 1 5 5 H 1.48498 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46966 * 120.00532 * 3 2 1 7 7 C 1.37883 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99768 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99945 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00416 * 179.97438 * 10 9 7 12 12 O 1.21596 * 119.99555 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00525 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00248 * 180.02562 * 13 11 10 15 15 H 1.08995 * 108.53583 * 326.95345 * 14 13 11 16 16 C 1.52159 * 108.68899 * 208.91471 * 14 13 11 17 17 C 1.52878 * 110.79434 * 171.46061 * 16 14 13 18 18 C 1.51643 * 108.69734 * 83.28913 * 17 16 14 19 19 C 1.38033 * 119.98750 * 112.45073 * 18 17 16 20 20 C 1.38386 * 119.63706 * 177.82429 * 19 18 17 21 21 C 1.38288 * 120.08148 * 359.97438 * 20 19 18 22 22 C 1.38169 * 120.22035 * 0.51058 * 21 20 19 23 23 C 1.37940 * 119.47298 * 291.21546 * 18 17 16 24 24 O 1.36152 * 120.33409 * 2.77375 * 23 18 17 25 25 C 1.43135 * 115.60533 * 70.25741 * 24 23 18 26 26 H 0.97003 * 120.00121 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47108 * 59.99943 * 9 7 2 28 28 H 1.08998 * 109.47342 * 299.99870 * 9 7 2 29 29 H 0.97005 * 120.00034 * 359.97438 * 10 9 7 30 30 H 0.97005 * 119.99926 * 359.97438 * 13 11 10 31 31 H 1.09005 * 109.20942 * 51.12055 * 16 14 13 32 32 H 1.08999 * 109.21632 * 291.79932 * 16 14 13 33 33 H 1.09005 * 109.60095 * 323.52703 * 17 16 14 34 34 H 1.08997 * 109.73079 * 203.13509 * 17 16 14 35 35 H 1.08001 * 120.18136 * 357.82428 * 19 18 17 36 36 H 1.08008 * 119.96251 * 180.02562 * 20 19 18 37 37 H 1.07997 * 119.89176 * 180.49311 * 21 20 19 38 38 H 1.08007 * 120.16188 * 179.88525 * 22 21 20 39 39 H 1.09003 * 109.18116 * 33.59740 * 25 24 23 40 40 H 1.09006 * 109.18466 * 152.83669 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0015 12 8 0.5582 -5.1056 -0.0006 13 7 2.6294 -5.9078 -0.0021 14 6 2.1411 -7.2890 -0.0023 15 1 1.2091 -7.3271 0.5615 16 6 3.1684 -8.1694 0.6940 17 6 2.6180 -9.5794 0.9091 18 6 2.8185 -10.3790 -0.3637 19 6 3.7053 -11.4366 -0.3815 20 6 3.8494 -12.1896 -1.5336 21 6 3.1075 -11.8826 -2.6595 22 6 2.2275 -10.8175 -2.6435 23 6 2.0903 -10.0561 -1.4898 24 8 1.2398 -8.9931 -1.4774 25 6 1.8610 -7.7044 -1.4313 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 3.1566 -3.4355 -0.0028 30 1 3.5832 -5.7306 -0.0031 31 1 3.4204 -7.7314 1.6598 32 1 4.0677 -8.2252 0.0806 33 1 1.5547 -9.5251 1.1431 34 1 3.1489 -10.0603 1.7306 35 1 4.2836 -11.6752 0.4989 36 1 4.5415 -13.0185 -1.5532 37 1 3.2165 -12.4772 -3.5545 38 1 1.6499 -10.5775 -3.5240 39 1 2.7995 -7.7392 -1.9847 40 1 1.2002 -6.9714 -1.8944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338748601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:14 Heat of formation + Delta-G solvation = -73.216174 kcal Electronic energy + Delta-G solvation = -22457.618840 eV Core-core repulsion = 19043.173555 eV Total energy + Delta-G solvation = -3414.445285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.75515 -40.77215 -38.49442 -37.04173 -36.04821 -34.66516 -34.20454 -31.56269 -31.25390 -29.18029 -28.15342 -26.01211 -24.59515 -23.58731 -22.30417 -21.87279 -21.65337 -19.87269 -18.89062 -18.12609 -17.77666 -17.00064 -16.75839 -16.59811 -16.30073 -15.98565 -15.71789 -15.31760 -15.11443 -14.90310 -14.44138 -14.27160 -14.06019 -14.00676 -13.65476 -13.13634 -12.92703 -12.88121 -12.73448 -12.67885 -12.23009 -12.12172 -11.76947 -11.71487 -11.49431 -11.39566 -11.24271 -10.79042 -10.26821 -9.76891 -9.63194 -9.46994 -8.27775 -6.44485 0.25625 0.40594 1.43598 1.48321 1.56165 1.74336 2.19858 2.38872 2.52316 2.99384 3.07131 3.48581 3.56351 3.71373 3.86995 3.95651 4.07193 4.22040 4.24708 4.40948 4.52583 4.56122 4.59883 4.63268 4.79658 4.96209 5.00932 5.07177 5.11450 5.21719 5.27193 5.43106 5.46932 5.49162 5.57317 5.61182 5.66622 5.85076 5.85989 6.24165 6.49895 6.67164 7.24489 7.30261 7.70326 8.84415 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041418 B = 0.002702 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.868806 B =10360.935794 C =10491.639171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.286 3.714 10 N -0.721 5.721 11 C 0.691 3.309 12 O -0.646 6.646 13 N -0.724 5.724 14 C 0.139 3.861 15 H 0.061 0.939 16 C -0.112 4.112 17 C -0.074 4.074 18 C -0.123 4.123 19 C -0.101 4.101 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.148 4.148 23 C 0.065 3.935 24 O -0.341 6.341 25 C 0.066 3.934 26 H 0.269 0.731 27 H -0.015 1.015 28 H -0.015 1.015 29 H 0.406 0.594 30 H 0.414 0.586 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.752 -24.503 -1.464 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.162 3.838 10 N -0.374 5.374 11 C 0.390 3.610 12 O -0.529 6.529 13 N -0.383 5.383 14 C 0.033 3.967 15 H 0.079 0.921 16 C -0.150 4.150 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.143 4.143 21 C -0.129 4.129 22 C -0.166 4.166 23 C 0.022 3.978 24 O -0.257 6.257 25 C -0.010 4.010 26 H 0.078 0.922 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.241 0.759 30 H 0.251 0.749 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.167 0.833 38 H 0.145 0.855 39 H 0.091 0.909 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.300 -24.568 -1.469 27.976 hybrid contribution 0.278 1.357 -0.203 1.400 sum 13.578 -23.211 -1.672 26.942 Atomic orbital electron populations 1.70139 1.08324 1.28643 1.49900 1.26082 0.95776 1.03930 0.93880 0.85184 0.77868 0.76493 0.79509 1.18636 1.21173 1.18582 1.21574 0.94340 0.90413 1.52978 0.89707 1.18405 0.88105 0.83348 0.93924 1.45288 1.10964 1.03688 1.77501 1.16349 0.85145 0.81668 0.77795 1.90867 1.16767 1.84838 1.60384 1.44900 1.09205 1.03777 1.80417 1.20918 0.99157 0.80233 0.96362 0.92054 1.21589 0.97454 0.93935 1.02052 1.20703 1.02074 0.93493 0.94855 1.20439 0.97946 0.98751 0.95196 1.21319 0.97215 0.93598 0.99728 1.21605 0.99804 1.00335 0.92577 1.21351 0.95234 0.96300 0.99968 1.21500 1.00173 0.98069 0.96907 1.18939 0.93942 0.90726 0.94200 1.86332 1.32608 1.13241 1.93550 1.22815 0.98658 0.82636 0.96925 0.92243 0.99741 0.99701 0.75866 0.74906 0.88754 0.89508 0.91811 0.87198 0.82821 0.82847 0.83341 0.85504 0.90856 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.99 42.37 29.54 68.60 2.03 44.39 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.56 -30.36 9.28 25.60 0.24 -30.12 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.12 16 9 C 0.29 15.99 5.43 85.63 0.46 16.46 16 10 N -0.72 -31.10 5.55 -482.30 -2.68 -33.78 16 11 C 0.69 29.01 8.46 179.06 1.51 30.52 16 12 O -0.65 -34.14 15.95 -4.02 -0.06 -34.20 16 13 N -0.72 -20.80 4.99 -461.65 -2.30 -23.10 16 14 C 0.14 3.77 2.28 44.20 0.10 3.87 16 15 H 0.06 2.11 7.32 -2.39 -0.02 2.09 16 16 C -0.11 -1.99 5.08 30.28 0.15 -1.84 16 17 C -0.07 -1.26 5.55 30.11 0.17 -1.10 16 18 C -0.12 -2.31 5.07 -19.68 -0.10 -2.41 16 19 C -0.10 -1.35 9.69 22.26 0.22 -1.14 16 20 C -0.13 -1.51 10.05 22.32 0.22 -1.28 16 21 C -0.11 -1.60 10.03 22.27 0.22 -1.37 16 22 C -0.15 -3.00 10.01 22.41 0.22 -2.77 16 23 C 0.07 1.55 5.61 22.36 0.13 1.67 16 24 O -0.34 -10.11 9.99 -95.28 -0.95 -11.06 16 25 C 0.07 1.87 5.99 71.47 0.43 2.30 16 26 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 27 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 28 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 29 H 0.41 14.16 8.34 -92.70 -0.77 13.39 16 30 H 0.41 8.53 8.62 -92.70 -0.80 7.73 16 31 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.09 1.26 7.90 -2.39 -0.02 1.25 16 33 H 0.06 1.37 7.88 -2.38 -0.02 1.35 16 34 H 0.11 1.22 7.93 -2.39 -0.02 1.21 16 35 H 0.15 1.18 7.98 -2.91 -0.02 1.15 16 36 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 37 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 38 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.07 1.76 7.90 -2.39 -0.02 1.74 16 40 H 0.07 2.50 8.08 -2.38 -0.02 2.48 16 Total: -1.00 -77.20 335.06 0.25 -76.95 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -0.51 Total: 23.90 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 4.44 Total: 13.41 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -4.70 Total: -113.39 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -1.02 Total: -45.26 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -77.20 0.25 -76.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338748601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.736 kcal (2) G-P(sol) polarization free energy of solvation -77.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds