Wall clock time and date at job start Tue Mar 31 2020 06:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99880 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99845 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99802 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99744 * 180.02562 * 13 11 10 15 15 H 1.09008 * 108.64514 * 35.00244 * 14 13 11 16 16 C 1.52146 * 108.68799 * 153.10302 * 14 13 11 17 17 C 1.52937 * 110.77226 * 188.66222 * 16 14 13 18 18 C 1.51647 * 108.58406 * 276.54236 * 17 16 14 19 19 C 1.38034 * 119.98858 * 247.59302 * 18 17 16 20 20 C 1.38390 * 119.63237 * 182.21676 * 19 18 17 21 21 C 1.38283 * 120.08153 * 359.95878 * 20 19 18 22 22 C 1.38167 * 120.22662 * 359.50925 * 21 20 19 23 23 C 1.37948 * 119.47268 * 68.81389 * 18 17 16 24 24 O 1.36155 * 120.33056 * 357.20337 * 23 18 17 25 25 C 1.43136 * 115.61130 * 289.75777 * 24 23 18 26 26 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 28 28 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 29 29 H 0.97002 * 120.00079 * 0.02562 * 10 9 7 30 30 H 0.96991 * 120.00633 * 359.97438 * 13 11 10 31 31 H 1.08999 * 109.21368 * 308.87673 * 16 14 13 32 32 H 1.09006 * 109.20755 * 68.19796 * 16 14 13 33 33 H 1.09003 * 109.64370 * 156.82067 * 17 16 14 34 34 H 1.09002 * 109.80080 * 36.35826 * 17 16 14 35 35 H 1.07994 * 120.18279 * 2.21186 * 19 18 17 36 36 H 1.08003 * 119.95761 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.88598 * 179.52785 * 21 20 19 38 38 H 1.08001 * 120.16223 * 180.11944 * 22 21 20 39 39 H 1.09003 * 109.18254 * 326.40906 * 25 24 23 40 40 H 1.08999 * 109.18189 * 207.16478 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0025 12 8 0.5586 -5.1055 0.0017 13 7 2.6299 -5.9076 0.0031 14 6 2.1416 -7.2889 0.0034 15 1 1.2280 -7.3356 -0.5894 16 6 3.1912 -8.1771 -0.6480 17 6 2.6463 -9.5892 -0.8674 18 6 2.8070 -10.3746 0.4199 19 6 3.6931 -11.4314 0.4772 20 6 3.8004 -12.1720 1.6414 21 6 3.0237 -11.8526 2.7400 22 6 2.1451 -10.7878 2.6849 23 6 2.0439 -10.0396 1.5191 24 8 1.1944 -8.9767 1.4683 25 6 1.8170 -7.6885 1.4274 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6248 -2.5571 -0.8896 29 1 3.1569 -3.4353 0.0028 30 1 3.5835 -5.7304 0.0027 31 1 3.4752 -7.7505 -1.6100 32 1 4.0697 -8.2253 -0.0044 33 1 3.2050 -10.0775 -1.6659 34 1 1.5912 -9.5401 -1.1365 35 1 4.2993 -11.6789 -0.3816 36 1 4.4917 -13.0002 1.6919 37 1 3.1045 -12.4375 3.6444 38 1 1.5405 -10.5381 3.5443 39 1 2.7378 -7.7170 2.0101 40 1 1.1422 -6.9507 1.8615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338748602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:17 Heat of formation + Delta-G solvation = -53.533085 kcal Electronic energy + Delta-G solvation = -22500.482748 eV Core-core repulsion = 19086.890986 eV Total energy + Delta-G solvation = -3413.591762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83878 -39.39073 -37.61585 -35.93707 -34.37818 -33.55229 -32.43500 -30.57894 -30.42416 -27.59036 -26.42418 -24.99984 -22.93824 -22.71209 -21.33158 -20.93005 -20.27735 -18.40054 -17.91104 -17.05092 -16.48673 -15.96816 -15.67800 -15.37940 -15.00725 -14.55559 -14.17151 -14.15076 -13.84003 -13.69010 -13.54447 -13.10293 -12.94684 -12.44260 -12.26614 -12.19753 -12.05422 -11.96442 -11.33823 -11.01214 -10.94988 -10.80634 -10.75692 -10.45404 -10.18235 -9.61334 -9.10684 -8.90320 -8.79761 -8.73579 -8.65779 -7.93075 -6.51410 -4.24750 0.96581 1.06190 3.00451 3.31419 3.37516 3.40748 3.56418 3.75964 3.86498 4.35706 4.43457 4.43892 4.64595 4.71898 4.85439 4.87791 4.96638 5.06675 5.16128 5.22014 5.27639 5.29427 5.37451 5.47920 5.64230 5.71038 5.77780 5.91035 6.00173 6.09880 6.20142 6.28954 6.47603 6.70275 6.86911 7.25505 7.29887 7.36211 7.44456 7.83986 8.28861 8.61912 8.78855 9.21053 9.49589 10.88980 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041117 B = 0.002717 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.821686 B =10304.786003 C =10441.982264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.623 4.623 8 H 0.057 0.943 9 C 0.257 3.743 10 N -0.723 5.723 11 C 0.692 3.308 12 O -0.598 6.598 13 N -0.751 5.751 14 C 0.137 3.863 15 H 0.094 0.906 16 C -0.124 4.124 17 C -0.075 4.075 18 C -0.114 4.114 19 C -0.102 4.102 20 C -0.130 4.130 21 C -0.110 4.110 22 C -0.132 4.132 23 C 0.100 3.900 24 O -0.321 6.321 25 C 0.060 3.940 26 H 0.273 0.727 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.389 0.611 30 H 0.393 0.607 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.055 0.945 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.247 -23.639 1.979 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.906 3.094 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.661 4.661 8 H 0.075 0.925 9 C 0.135 3.865 10 N -0.375 5.375 11 C 0.391 3.609 12 O -0.477 6.477 13 N -0.409 5.409 14 C 0.031 3.969 15 H 0.112 0.888 16 C -0.162 4.162 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.148 4.148 21 C -0.128 4.128 22 C -0.150 4.150 23 C 0.056 3.944 24 O -0.236 6.236 25 C -0.016 4.016 26 H 0.084 0.916 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.221 0.779 30 H 0.227 0.773 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.074 0.926 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.680 -22.134 1.971 24.239 hybrid contribution 1.314 -1.508 0.069 2.001 sum 10.994 -23.642 2.040 26.153 Atomic orbital electron populations 1.70724 1.06873 1.31143 1.44976 1.25874 0.96434 1.02704 0.93357 0.83404 0.74482 0.74622 0.76849 1.21284 1.21411 1.20778 1.22082 0.94569 0.91476 1.57960 0.92506 1.19052 0.88474 0.82580 0.96363 1.45529 1.10754 1.04098 1.77133 1.16200 0.85285 0.81106 0.78276 1.90890 1.14126 1.84136 1.58515 1.45182 1.08922 1.04544 1.82249 1.20809 0.98787 0.80538 0.96800 0.88794 1.21649 0.98189 0.94476 1.01868 1.20695 1.02937 0.93712 0.93922 1.20307 0.97478 0.97848 0.95836 1.20967 0.98042 0.94733 0.98301 1.21184 1.00087 1.00160 0.93409 1.21030 0.96042 0.96965 0.98788 1.21338 0.99450 0.97271 0.96945 1.18607 0.92434 0.90709 0.92657 1.86364 1.31230 1.12772 1.93213 1.23025 0.98928 0.82837 0.96819 0.91600 0.96707 0.96697 0.77863 0.77343 0.90110 0.91318 0.90185 0.89740 0.85592 0.85874 0.85682 0.85235 0.92619 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.65 55.43 0.76 -26.71 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.48 29.90 -169.99 -5.08 19.39 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.62 -17.16 9.28 -34.44 -0.32 -17.48 16 8 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 9 C 0.26 6.85 4.74 -5.19 -0.02 6.82 16 10 N -0.72 -15.41 5.55 -66.41 -0.37 -15.78 16 11 C 0.69 14.01 8.39 -86.92 -0.73 13.28 16 12 O -0.60 -14.67 15.83 5.29 0.08 -14.59 16 13 N -0.75 -10.84 5.01 -59.89 -0.30 -11.14 16 14 C 0.14 1.81 2.25 -69.16 -0.16 1.66 16 15 H 0.09 1.50 7.39 -51.92 -0.38 1.11 16 16 C -0.12 -1.20 5.06 -27.20 -0.14 -1.34 16 17 C -0.07 -0.70 5.55 -27.45 -0.15 -0.85 16 18 C -0.11 -1.17 5.07 -104.34 -0.53 -1.70 16 19 C -0.10 -0.86 9.69 -39.60 -0.38 -1.25 16 20 C -0.13 -1.02 10.05 -39.51 -0.40 -1.42 16 21 C -0.11 -0.92 10.03 -39.59 -0.40 -1.32 16 22 C -0.13 -1.36 10.01 -39.37 -0.39 -1.75 16 23 C 0.10 1.19 5.61 -39.45 -0.22 0.97 16 24 O -0.32 -4.48 9.99 -20.23 -0.20 -4.68 16 25 C 0.06 0.81 5.98 36.36 0.22 1.03 16 26 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 27 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16 28 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 29 H 0.39 7.12 8.34 -40.82 -0.34 6.78 16 30 H 0.39 4.46 8.60 -40.82 -0.35 4.11 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 33 H 0.08 0.57 7.93 -51.93 -0.41 0.16 16 34 H 0.08 0.88 7.89 -51.93 -0.41 0.48 16 35 H 0.13 0.78 7.98 -52.49 -0.42 0.36 16 36 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 40 H 0.11 1.69 7.87 -51.93 -0.41 1.28 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -33.82 333.37 -9.37 -43.19 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.56 Total: 8.10 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -3.72 Total: -2.82 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.09 Total: -53.63 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.12 Total: -19.27 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.08 Total: 19.39 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.82 -9.37 -43.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338748602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.342 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds