Wall clock time and date at job start Tue Mar 31 2020 06:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99880 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99845 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99802 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99744 * 180.02562 * 13 11 10 15 15 H 1.09008 * 108.64514 * 35.00244 * 14 13 11 16 16 C 1.52146 * 108.68799 * 153.10302 * 14 13 11 17 17 C 1.52937 * 110.77226 * 188.66222 * 16 14 13 18 18 C 1.51647 * 108.58406 * 276.54236 * 17 16 14 19 19 C 1.38034 * 119.98858 * 247.59302 * 18 17 16 20 20 C 1.38390 * 119.63237 * 182.21676 * 19 18 17 21 21 C 1.38283 * 120.08153 * 359.95878 * 20 19 18 22 22 C 1.38167 * 120.22662 * 359.50925 * 21 20 19 23 23 C 1.37948 * 119.47268 * 68.81389 * 18 17 16 24 24 O 1.36155 * 120.33056 * 357.20337 * 23 18 17 25 25 C 1.43136 * 115.61130 * 289.75777 * 24 23 18 26 26 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 28 28 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 29 29 H 0.97002 * 120.00079 * 0.02562 * 10 9 7 30 30 H 0.96991 * 120.00633 * 359.97438 * 13 11 10 31 31 H 1.08999 * 109.21368 * 308.87673 * 16 14 13 32 32 H 1.09006 * 109.20755 * 68.19796 * 16 14 13 33 33 H 1.09003 * 109.64370 * 156.82067 * 17 16 14 34 34 H 1.09002 * 109.80080 * 36.35826 * 17 16 14 35 35 H 1.07994 * 120.18279 * 2.21186 * 19 18 17 36 36 H 1.08003 * 119.95761 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.88598 * 179.52785 * 21 20 19 38 38 H 1.08001 * 120.16223 * 180.11944 * 22 21 20 39 39 H 1.09003 * 109.18254 * 326.40906 * 25 24 23 40 40 H 1.08999 * 109.18189 * 207.16478 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0025 12 8 0.5586 -5.1055 0.0017 13 7 2.6299 -5.9076 0.0031 14 6 2.1416 -7.2889 0.0034 15 1 1.2280 -7.3356 -0.5894 16 6 3.1912 -8.1771 -0.6480 17 6 2.6463 -9.5892 -0.8674 18 6 2.8070 -10.3746 0.4199 19 6 3.6931 -11.4314 0.4772 20 6 3.8004 -12.1720 1.6414 21 6 3.0237 -11.8526 2.7400 22 6 2.1451 -10.7878 2.6849 23 6 2.0439 -10.0396 1.5191 24 8 1.1944 -8.9767 1.4683 25 6 1.8170 -7.6885 1.4274 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6248 -2.5571 -0.8896 29 1 3.1569 -3.4353 0.0028 30 1 3.5835 -5.7304 0.0027 31 1 3.4752 -7.7505 -1.6100 32 1 4.0697 -8.2253 -0.0044 33 1 3.2050 -10.0775 -1.6659 34 1 1.5912 -9.5401 -1.1365 35 1 4.2993 -11.6789 -0.3816 36 1 4.4917 -13.0002 1.6919 37 1 3.1045 -12.4375 3.6444 38 1 1.5405 -10.5381 3.5443 39 1 2.7378 -7.7170 2.0101 40 1 1.1422 -6.9507 1.8615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338748602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:16 Heat of formation + Delta-G solvation = -77.647986 kcal Electronic energy + Delta-G solvation = -22501.528449 eV Core-core repulsion = 19086.890986 eV Total energy + Delta-G solvation = -3414.637462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81171 -40.86835 -38.53872 -37.14811 -36.30428 -34.76903 -34.26867 -31.56786 -31.27976 -28.88207 -28.06549 -26.01789 -24.76728 -23.61872 -22.40869 -21.93838 -21.70671 -20.02432 -18.99081 -18.65267 -17.81107 -16.95795 -16.81197 -16.55079 -16.07129 -15.78544 -15.68822 -15.54292 -15.20177 -15.00553 -14.47575 -14.36774 -14.26967 -14.24125 -13.70376 -13.16315 -13.09257 -12.91846 -12.78102 -12.56415 -12.15530 -11.88662 -11.82323 -11.75593 -11.47224 -11.36318 -10.92684 -10.77616 -10.35993 -9.79870 -9.76263 -9.49755 -8.79776 -6.55028 0.22894 0.38178 1.55383 1.64007 1.65930 1.83148 2.08234 2.47044 2.56117 2.95463 3.08733 3.38292 3.49994 3.67511 3.82222 3.92122 4.03099 4.18608 4.21033 4.37588 4.48936 4.52383 4.56396 4.59225 4.71145 4.80614 4.93026 4.96360 4.97756 5.07156 5.17396 5.37034 5.42261 5.44803 5.49331 5.55080 5.58491 5.83044 6.02866 6.13478 6.35763 6.46498 7.13026 7.30740 7.58102 8.59832 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041117 B = 0.002717 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.821686 B =10304.786003 C =10441.982264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.034 4.034 3 Si 1.134 2.866 4 H -0.271 1.271 5 H -0.259 1.259 6 H -0.285 1.285 7 C -0.627 4.627 8 H 0.077 0.923 9 C 0.272 3.728 10 N -0.717 5.717 11 C 0.691 3.309 12 O -0.645 6.645 13 N -0.723 5.723 14 C 0.140 3.860 15 H 0.061 0.939 16 C -0.113 4.113 17 C -0.073 4.073 18 C -0.123 4.123 19 C -0.101 4.101 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.148 4.148 23 C 0.064 3.936 24 O -0.341 6.341 25 C 0.066 3.934 26 H 0.254 0.746 27 H -0.019 1.019 28 H -0.019 1.019 29 H 0.407 0.593 30 H 0.414 0.586 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.248 -25.146 1.658 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.232 4.232 3 Si 0.953 3.047 4 H -0.196 1.196 5 H -0.184 1.184 6 H -0.211 1.211 7 C -0.665 4.665 8 H 0.095 0.905 9 C 0.148 3.852 10 N -0.371 5.371 11 C 0.391 3.609 12 O -0.528 6.528 13 N -0.381 5.381 14 C 0.034 3.966 15 H 0.079 0.921 16 C -0.151 4.151 17 C -0.111 4.111 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.143 4.143 21 C -0.128 4.128 22 C -0.167 4.167 23 C 0.021 3.979 24 O -0.257 6.257 25 C -0.010 4.010 26 H 0.063 0.937 27 H -0.001 1.001 28 H -0.001 1.001 29 H 0.243 0.757 30 H 0.252 0.748 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.167 0.833 38 H 0.145 0.855 39 H 0.091 0.909 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.763 -23.716 1.655 27.470 hybrid contribution 0.064 -1.244 0.210 1.263 sum 13.827 -24.960 1.865 28.595 Atomic orbital electron populations 1.70873 1.08320 1.29985 1.47502 1.27673 0.96342 1.07191 0.91990 0.82749 0.74163 0.69900 0.77926 1.19626 1.18351 1.21116 1.22433 0.95615 0.91557 1.56891 0.90468 1.18544 0.88789 0.84608 0.93251 1.45119 1.10824 1.03490 1.77663 1.16344 0.85199 0.81606 0.77755 1.90863 1.16697 1.84833 1.60361 1.44900 1.09211 1.03794 1.80233 1.20935 0.99042 0.80097 0.96514 0.92058 1.21604 0.97159 0.93888 1.02405 1.20717 1.02247 0.93517 0.94610 1.20445 0.97758 0.98766 0.95383 1.21325 0.97359 0.93631 0.99520 1.21611 0.99648 1.00352 0.92661 1.21354 0.95108 0.96217 1.00158 1.21498 1.00336 0.98180 0.96642 1.18943 0.93902 0.90750 0.94295 1.86333 1.32588 1.13265 1.93513 1.22801 0.98569 0.82730 0.96942 0.93670 1.00129 1.00080 0.75740 0.74840 0.88660 0.89467 0.87119 0.91746 0.82769 0.82805 0.83322 0.85535 0.90904 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.36 13.65 21.45 0.29 -58.07 16 2 C -0.03 -1.91 5.46 84.65 0.46 -1.44 16 3 Si 1.13 48.11 29.90 68.60 2.05 50.16 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.63 -34.65 9.28 25.60 0.24 -34.41 16 8 H 0.08 3.88 7.60 -2.91 -0.02 3.86 16 9 C 0.27 15.10 4.74 85.63 0.41 15.50 16 10 N -0.72 -30.99 5.55 -482.30 -2.68 -33.67 16 11 C 0.69 28.83 8.39 179.06 1.50 30.33 16 12 O -0.65 -33.63 15.83 -3.99 -0.06 -33.69 16 13 N -0.72 -20.61 5.01 -461.65 -2.31 -22.93 16 14 C 0.14 3.75 2.25 44.20 0.10 3.85 16 15 H 0.06 2.07 7.39 -2.38 -0.02 2.06 16 16 C -0.11 -1.96 5.06 30.29 0.15 -1.80 16 17 C -0.07 -1.23 5.55 30.13 0.17 -1.06 16 18 C -0.12 -2.29 5.07 -19.68 -0.10 -2.39 16 19 C -0.10 -1.33 9.69 22.26 0.22 -1.11 16 20 C -0.12 -1.48 10.05 22.32 0.22 -1.26 16 21 C -0.11 -1.58 10.03 22.26 0.22 -1.36 16 22 C -0.15 -2.99 10.01 22.41 0.22 -2.76 16 23 C 0.06 1.52 5.61 22.36 0.13 1.64 16 24 O -0.34 -10.06 9.99 -95.31 -0.95 -11.02 16 25 C 0.07 1.87 5.98 71.47 0.43 2.30 16 26 H 0.25 16.58 7.22 -92.70 -0.67 15.91 16 27 H -0.02 -1.18 8.01 -2.39 -0.02 -1.20 16 28 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 29 H 0.41 14.43 8.34 -92.71 -0.77 13.66 16 30 H 0.41 8.51 8.60 -92.72 -0.80 7.71 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.25 7.90 -2.38 -0.02 1.23 16 33 H 0.11 1.19 7.93 -2.39 -0.02 1.17 16 34 H 0.06 1.35 7.89 -2.39 -0.02 1.33 16 35 H 0.15 1.14 7.98 -2.91 -0.02 1.11 16 36 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 38 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 39 H 0.07 1.76 7.90 -2.39 -0.02 1.74 16 40 H 0.07 2.48 7.87 -2.39 -0.02 2.46 16 Total: -1.00 -78.24 333.37 0.30 -77.94 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.40 Total: 25.25 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 4.37 Total: 6.02 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -4.70 Total: -114.67 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -1.02 Total: -44.71 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.05 Total: 50.16 kcal Total: -78.24 0.30 -77.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338748602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.287 kcal (2) G-P(sol) polarization free energy of solvation -78.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds