Wall clock time and date at job start Tue Mar 31 2020 06:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00434 * 2 1 4 4 H 1.48496 * 109.47543 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47358 * 300.00677 * 3 2 1 6 6 H 1.48507 * 109.46978 * 60.00146 * 3 2 1 7 7 C 1.37880 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00513 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47043 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47131 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99955 * 180.02562 * 11 10 9 13 13 O 1.21584 * 119.99998 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99988 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00200 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47097 * 180.02562 * 15 14 12 17 17 H 1.08997 * 110.66383 * 56.79008 * 16 15 14 18 18 C 1.54707 * 110.74694 * 180.02562 * 16 15 14 19 19 C 1.51645 * 101.92201 * 143.63342 * 18 16 15 20 20 C 1.37741 * 132.17555 * 164.22111 * 19 18 16 21 21 C 1.38353 * 119.97655 * 180.54312 * 20 19 18 22 22 C 1.38283 * 119.76367 * 0.37865 * 21 20 19 23 23 C 1.37932 * 120.35368 * 359.26026 * 22 21 20 24 24 C 1.38884 * 107.03657 * 344.52428 * 19 18 16 25 25 O 1.36141 * 111.23901 * 359.06137 * 24 19 18 26 26 H 0.97009 * 119.99660 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46859 * 60.00068 * 9 7 2 28 28 H 1.09002 * 109.47087 * 300.00703 * 9 7 2 29 29 H 1.09005 * 109.46812 * 60.00748 * 10 9 7 30 30 H 1.08992 * 109.47659 * 300.00288 * 10 9 7 31 31 H 0.97003 * 119.99660 * 0.02562 * 11 10 9 32 32 H 0.96996 * 119.99717 * 0.02562 * 14 12 11 33 33 H 1.08998 * 109.46601 * 60.00611 * 15 14 12 34 34 H 1.09002 * 109.47168 * 300.00847 * 15 14 12 35 35 H 1.09000 * 110.93994 * 25.47726 * 18 16 15 36 36 H 1.08997 * 110.93800 * 261.78870 * 18 16 15 37 37 H 1.07995 * 120.01289 * 0.52807 * 20 19 18 38 38 H 1.08002 * 120.11265 * 180.09204 * 21 20 19 39 39 H 1.08007 * 119.82195 * 179.52684 * 22 21 20 40 40 H 1.08001 * 119.87625 * 180.26498 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 7 1.5125 -4.9309 -0.0012 12 6 2.1863 -6.0981 -0.0016 13 8 3.4022 -6.0981 -0.0020 14 7 1.5124 -7.2652 -0.0005 15 6 2.2448 -8.5340 -0.0015 16 6 1.2505 -9.6969 -0.0006 17 1 0.5751 -9.6261 -0.8531 18 6 1.9940 -11.0536 -0.0010 19 6 1.0974 -11.9024 0.8796 20 6 1.0112 -13.2635 1.0725 21 6 0.0722 -13.7795 1.9479 22 6 -0.7821 -12.9249 2.6202 23 6 -0.6926 -11.5611 2.4341 24 6 0.2530 -11.0333 1.5583 25 8 0.5152 -9.7373 1.2341 26 1 -0.4850 0.8402 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6245 -2.5570 0.8896 29 1 2.8723 -3.6048 0.8878 30 1 2.8711 -3.6041 -0.8921 31 1 0.5425 -4.9308 -0.0005 32 1 0.5425 -7.2652 0.0002 33 1 2.8727 -8.5917 0.8876 34 1 2.8703 -8.5918 -0.8924 35 1 2.9874 -10.9536 0.4361 36 1 2.0528 -11.4652 -1.0086 37 1 1.6761 -13.9276 0.5405 38 1 0.0037 -14.8462 2.1019 39 1 -1.5205 -13.3272 3.2980 40 1 -1.3609 -10.9005 2.9665 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343598026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:40 Heat of formation + Delta-G solvation = -69.119096 kcal Electronic energy + Delta-G solvation = -21530.939412 eV Core-core repulsion = 18116.671790 eV Total energy + Delta-G solvation = -3414.267622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.20064 -40.92748 -38.50659 -36.76569 -35.81638 -34.81837 -33.71318 -31.83683 -30.95714 -30.58906 -27.35524 -26.14156 -23.53973 -23.02842 -22.78294 -22.47107 -21.93555 -19.47901 -18.56628 -18.42796 -17.75284 -17.65182 -16.70572 -16.59115 -16.48085 -16.11610 -15.39432 -15.21597 -15.04125 -14.95803 -14.53408 -14.27857 -14.08194 -13.98401 -13.58933 -13.29085 -13.20389 -12.94197 -12.73605 -12.56278 -12.50340 -12.24292 -11.85639 -11.71499 -11.67468 -11.50082 -11.21698 -10.61316 -10.39280 -9.83423 -9.75131 -9.11383 -8.24024 -6.34220 0.34436 0.42365 1.41458 1.42082 1.55409 1.68984 2.12669 2.20504 2.41607 2.76969 3.10772 3.27702 3.33392 3.61951 3.82176 3.94951 4.02399 4.22089 4.32123 4.46416 4.47564 4.52465 4.56496 4.62741 4.66336 4.84684 4.86965 4.90531 5.12411 5.30343 5.39019 5.40466 5.47398 5.51341 5.57071 5.59454 5.71050 5.78718 5.99744 6.17194 6.23083 6.79264 7.08339 7.35044 7.56133 8.88158 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041475 B = 0.002211 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.945893 B =12663.455146 C =13161.875668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.734 5.734 12 C 0.699 3.301 13 O -0.639 6.639 14 N -0.733 5.733 15 C 0.146 3.854 16 C 0.074 3.926 17 H 0.112 0.888 18 C -0.096 4.096 19 C -0.185 4.185 20 C -0.076 4.076 21 C -0.150 4.150 22 C -0.089 4.089 23 C -0.157 4.157 24 C 0.076 3.924 25 O -0.320 6.320 26 H 0.266 0.734 27 H 0.010 0.990 28 H 0.007 0.993 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.407 0.593 32 H 0.411 0.589 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.147 0.853 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 -30.518 0.837 30.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.399 3.601 13 O -0.521 6.521 14 N -0.390 5.390 15 C 0.022 3.978 16 C 0.018 3.982 17 H 0.130 0.870 18 C -0.134 4.134 19 C -0.186 4.186 20 C -0.094 4.094 21 C -0.168 4.168 22 C -0.107 4.107 23 C -0.176 4.176 24 C 0.031 3.969 25 O -0.235 6.235 26 H 0.074 0.926 27 H 0.028 0.972 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.242 0.758 32 H 0.247 0.753 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.326 -30.187 0.940 30.231 hybrid contribution -0.609 1.215 0.083 1.361 sum -1.934 -28.972 1.023 29.054 Atomic orbital electron populations 1.70072 1.07549 1.27923 1.51119 1.25896 0.95835 1.03175 0.94458 0.85366 0.78966 0.78652 0.77872 1.18921 1.20176 1.20269 1.21499 0.93640 0.91858 1.51352 0.92217 1.19139 0.94254 0.91710 0.96348 1.21086 0.94617 0.81024 0.99678 1.45229 1.10410 1.04480 1.78693 1.16113 0.85117 0.81193 0.77705 1.90859 1.13573 1.87335 1.60306 1.44870 1.10350 1.03688 1.80093 1.21377 0.93329 0.79723 1.03352 1.23700 0.93071 0.95271 0.86120 0.87040 1.21785 0.98691 0.90975 1.01906 1.21035 0.99288 0.95204 1.03096 1.20681 0.98420 0.92647 0.97682 1.21447 0.96447 1.01295 0.97639 1.21234 0.99173 0.91385 0.98901 1.20576 0.99032 0.96433 1.01542 1.19929 0.95823 0.83555 0.97610 1.86872 1.72417 1.23668 1.40541 0.92556 0.97206 0.97431 0.93928 0.93559 0.75818 0.75345 0.92166 0.88463 0.88299 0.86076 0.83480 0.82849 0.82860 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.88 13.29 21.45 0.28 -54.60 16 2 C 0.00 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.06 3.32 7.74 -2.92 -0.02 3.29 16 9 C 0.02 1.18 5.09 29.85 0.15 1.34 16 10 C 0.16 7.15 5.61 86.38 0.48 7.63 16 11 N -0.73 -26.77 5.56 -478.54 -2.66 -29.44 16 12 C 0.70 25.01 8.57 179.06 1.53 26.54 16 13 O -0.64 -28.04 16.34 -3.98 -0.07 -28.10 16 14 N -0.73 -18.82 5.55 -478.54 -2.65 -21.48 16 15 C 0.15 3.11 5.35 86.38 0.46 3.57 16 16 C 0.07 1.23 3.66 31.18 0.11 1.35 16 17 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 18 C -0.10 -1.26 6.65 30.73 0.20 -1.05 16 19 C -0.19 -3.05 6.27 -19.53 -0.12 -3.17 16 20 C -0.08 -0.97 10.03 22.18 0.22 -0.75 16 21 C -0.15 -1.70 10.07 22.31 0.22 -1.47 16 22 C -0.09 -1.16 10.01 22.21 0.22 -0.93 16 23 C -0.16 -2.81 10.06 22.45 0.23 -2.59 16 24 C 0.08 1.55 7.04 22.68 0.16 1.71 16 25 O -0.32 -7.18 10.80 -95.16 -1.03 -8.21 16 26 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 27 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.41 12.71 8.49 -92.71 -0.79 11.92 16 32 H 0.41 8.58 8.49 -92.71 -0.79 7.80 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.10 1.25 7.92 -2.39 -0.02 1.23 16 36 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 39 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -73.47 343.68 -0.03 -73.51 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.51 Total: 19.93 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 4.58 Total: 2.25 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -5.03 Total: -105.51 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -1.09 Total: -36.32 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -73.47 -0.03 -73.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343598026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.386 kcal (2) G-P(sol) polarization free energy of solvation -73.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds