Wall clock time and date at job start Tue Mar 31 2020 06:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99633 * 2 1 4 4 H 1.48503 * 109.47190 * 269.99861 * 3 2 1 5 5 H 1.48498 * 109.47437 * 30.00055 * 3 2 1 6 6 H 1.48496 * 109.47166 * 150.00329 * 3 2 1 7 7 C 1.37880 * 120.00608 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99685 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00115 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46934 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47178 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00089 * 179.97438 * 11 10 9 13 13 O 1.21590 * 120.00275 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00129 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00121 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47321 * 180.02562 * 15 14 12 17 17 H 1.09010 * 110.66501 * 303.23156 * 16 15 14 18 18 C 1.54702 * 110.75401 * 179.81137 * 16 15 14 19 19 C 1.51640 * 101.94442 * 216.44554 * 18 16 15 20 20 C 1.37743 * 132.17678 * 195.60308 * 19 18 16 21 21 C 1.38352 * 119.98218 * 179.11347 * 20 19 18 22 22 C 1.38286 * 119.76475 * 359.97438 * 21 20 19 23 23 C 1.37925 * 120.35306 * 0.19403 * 22 21 20 24 24 C 1.38885 * 107.04567 * 15.13646 * 19 18 16 25 25 O 1.36133 * 111.21589 * 1.44066 * 24 19 18 26 26 H 0.96996 * 120.00028 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46772 * 60.00379 * 9 7 2 28 28 H 1.08994 * 109.47646 * 300.00028 * 9 7 2 29 29 H 1.08997 * 109.47360 * 60.00083 * 10 9 7 30 30 H 1.09004 * 109.47124 * 299.99937 * 10 9 7 31 31 H 0.97004 * 120.00112 * 0.02562 * 11 10 9 32 32 H 0.97000 * 119.99618 * 0.02562 * 14 12 11 33 33 H 1.09002 * 109.46980 * 60.00034 * 15 14 12 34 34 H 1.09000 * 109.47109 * 300.00181 * 15 14 12 35 35 H 1.09003 * 110.93672 * 98.28046 * 18 16 15 36 36 H 1.09001 * 110.93501 * 334.60780 * 18 16 15 37 37 H 1.08010 * 120.00925 * 359.07484 * 20 19 18 38 38 H 1.08003 * 120.11577 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.82069 * 180.17300 * 22 21 20 40 40 H 1.08002 * 119.88610 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 7 5.4867 -2.6363 0.0001 12 6 6.1606 -3.8034 0.0008 13 8 5.5528 -4.8565 0.0008 14 7 7.5084 -3.8034 0.0003 15 6 8.2410 -5.0721 0.0004 16 6 9.7452 -4.7925 0.0004 17 1 10.0213 -4.1727 -0.8528 18 6 10.5485 -6.1145 0.0053 19 6 11.7308 -5.7601 0.8862 20 6 12.9511 -6.3674 1.0848 21 6 13.8698 -5.8056 1.9535 22 6 13.5579 -4.6343 2.6192 23 6 12.3353 -4.0264 2.4245 24 6 11.4031 -4.5880 1.5553 25 8 10.1479 -4.1712 1.2329 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6795 0.8895 28 1 3.8746 -0.6807 -0.8904 29 1 3.6581 -3.1504 -0.8896 30 1 3.6587 -3.1500 0.8904 31 1 5.9717 -1.7962 0.0005 32 1 7.9933 -2.9633 -0.0001 33 1 7.9773 -5.6439 -0.8893 34 1 7.9780 -5.6434 0.8906 35 1 10.8767 -6.3746 -1.0011 36 1 9.9645 -6.9235 0.4442 37 1 13.1905 -7.2823 0.5629 38 1 14.8274 -6.2797 2.1104 39 1 14.2755 -4.1935 3.2954 40 1 12.0995 -3.1120 2.9487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343598045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:43 Heat of formation + Delta-G solvation = -41.515634 kcal Electronic energy + Delta-G solvation = -21590.543738 eV Core-core repulsion = 18177.473091 eV Total energy + Delta-G solvation = -3413.070646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56743 -39.59890 -37.89507 -35.34093 -34.53157 -33.11125 -32.71743 -30.69560 -30.39753 -29.59434 -26.35961 -24.48309 -22.90168 -22.16137 -21.92697 -20.79426 -20.62563 -18.12629 -17.93852 -17.13597 -16.91791 -16.63645 -15.80028 -15.38491 -15.17747 -14.57960 -14.25499 -14.08284 -13.86311 -13.77246 -13.64901 -13.49811 -13.32816 -12.67846 -12.58938 -12.57117 -12.16847 -11.98812 -11.45766 -11.26769 -11.17750 -11.14155 -10.36802 -10.26336 -9.96112 -9.77136 -9.30501 -9.29044 -9.12243 -8.60890 -8.52027 -8.37497 -6.09059 -4.08921 0.89113 0.99502 2.70759 2.98241 3.26706 3.32458 3.34424 3.35939 3.52174 3.93551 4.10829 4.39530 4.40861 4.50954 4.57964 4.66925 4.71029 4.84857 5.00529 5.15741 5.19650 5.23861 5.28720 5.46223 5.56618 5.68503 5.92634 6.01908 6.09062 6.09839 6.22241 6.27184 6.46718 6.61319 6.82211 6.83612 7.04345 7.26958 7.30671 7.69569 8.29608 8.47762 8.89968 8.95978 9.51091 11.03962 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032748 B = 0.002390 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.819929 B =11712.207722 C =12373.028083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.148 3.852 11 N -0.741 5.741 12 C 0.701 3.299 13 O -0.595 6.595 14 N -0.751 5.751 15 C 0.147 3.853 16 C 0.070 3.930 17 H 0.095 0.905 18 C -0.101 4.101 19 C -0.175 4.175 20 C -0.070 4.070 21 C -0.151 4.151 22 C -0.086 4.086 23 C -0.139 4.139 24 C 0.108 3.892 25 O -0.296 6.296 26 H 0.264 0.736 27 H 0.022 0.978 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.392 0.608 32 H 0.397 0.603 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.017 -9.996 1.215 32.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.025 3.975 11 N -0.395 5.395 12 C 0.400 3.600 13 O -0.474 6.474 14 N -0.409 5.409 15 C 0.022 3.978 16 C 0.013 3.987 17 H 0.113 0.887 18 C -0.139 4.139 19 C -0.176 4.176 20 C -0.088 4.088 21 C -0.169 4.169 22 C -0.104 4.104 23 C -0.158 4.158 24 C 0.063 3.937 25 O -0.210 6.210 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.225 0.775 32 H 0.231 0.769 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 30.065 -10.710 1.321 31.943 hybrid contribution 0.839 1.651 -0.080 1.854 sum 30.904 -9.059 1.241 32.229 Atomic orbital electron populations 1.69904 1.06274 1.27017 1.50508 1.25006 0.94777 0.99150 0.94425 0.86742 0.80271 0.83535 0.78454 1.20266 1.21303 1.19088 1.20920 0.88643 0.94906 1.51524 0.90576 1.19798 0.97925 0.91443 0.96807 1.21384 0.74698 0.99857 1.01517 1.45511 1.08945 1.06228 1.78788 1.15989 0.81078 0.84902 0.78004 1.90908 1.67720 1.30562 1.58195 1.44988 1.05141 1.08876 1.81863 1.21238 0.86352 0.86532 1.03682 1.23693 0.95164 0.93550 0.86271 0.88684 1.21751 0.93617 0.97811 1.00718 1.20781 0.96790 0.96968 1.03035 1.20326 0.91626 0.99286 0.97588 1.21048 1.00018 0.97180 0.98680 1.20898 0.95527 0.95268 0.98674 1.20318 0.92363 1.01743 1.01344 1.19608 0.85235 0.92662 0.96204 1.86928 1.26917 1.67412 1.39707 0.92576 0.96006 0.96462 0.92123 0.92127 0.77516 0.76905 0.89426 0.90563 0.88526 0.88430 0.85740 0.85484 0.85153 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.21 27.47 -169.99 -4.67 16.55 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 10 C 0.15 3.11 5.61 -4.04 -0.02 3.09 16 11 N -0.74 -12.66 5.56 -65.23 -0.36 -13.02 16 12 C 0.70 12.02 8.57 -86.92 -0.74 11.28 16 13 O -0.60 -12.65 16.34 5.29 0.09 -12.56 16 14 N -0.75 -9.34 5.55 -65.23 -0.36 -9.70 16 15 C 0.15 1.53 5.35 -4.04 -0.02 1.51 16 16 C 0.07 0.58 3.66 -25.84 -0.09 0.49 16 17 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 18 C -0.10 -0.71 6.65 -26.52 -0.18 -0.89 16 19 C -0.17 -1.50 6.27 -104.10 -0.65 -2.15 16 20 C -0.07 -0.51 10.03 -39.72 -0.40 -0.90 16 21 C -0.15 -1.00 10.07 -39.52 -0.40 -1.40 16 22 C -0.09 -0.60 10.02 -39.68 -0.40 -1.00 16 23 C -0.14 -1.21 10.06 -39.31 -0.40 -1.61 16 24 C 0.11 1.09 7.03 -38.95 -0.27 0.81 16 25 O -0.30 -3.19 10.80 -20.16 -0.22 -3.40 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 28 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.39 5.56 8.49 -40.82 -0.35 5.21 16 32 H 0.40 4.01 8.49 -40.82 -0.35 3.66 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.65 7.92 -51.93 -0.41 0.24 16 37 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 39 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 340.08 15.07 5.12 5.12 Total: -1.00 -34.75 340.08 -9.43 -44.18 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.69 Total: 4.19 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -4.12 Total: -4.61 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.05 Total: -49.47 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.13 Total: -15.96 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.75 -9.43 -44.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343598045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.666 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds