Wall clock time and date at job start Tue Mar 31 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99633 * 2 1 4 4 H 1.48503 * 109.47190 * 269.99861 * 3 2 1 5 5 H 1.48498 * 109.47437 * 30.00055 * 3 2 1 6 6 H 1.48496 * 109.47166 * 150.00329 * 3 2 1 7 7 C 1.37880 * 120.00608 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99685 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00115 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46934 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47178 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00089 * 179.97438 * 11 10 9 13 13 O 1.21590 * 120.00275 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00129 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00121 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47321 * 180.02562 * 15 14 12 17 17 H 1.09010 * 110.66501 * 303.23156 * 16 15 14 18 18 C 1.54702 * 110.75401 * 179.81137 * 16 15 14 19 19 C 1.51640 * 101.94442 * 216.44554 * 18 16 15 20 20 C 1.37743 * 132.17678 * 195.60308 * 19 18 16 21 21 C 1.38352 * 119.98218 * 179.11347 * 20 19 18 22 22 C 1.38286 * 119.76475 * 359.97438 * 21 20 19 23 23 C 1.37925 * 120.35306 * 0.19403 * 22 21 20 24 24 C 1.38885 * 107.04567 * 15.13646 * 19 18 16 25 25 O 1.36133 * 111.21589 * 1.44066 * 24 19 18 26 26 H 0.96996 * 120.00028 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46772 * 60.00379 * 9 7 2 28 28 H 1.08994 * 109.47646 * 300.00028 * 9 7 2 29 29 H 1.08997 * 109.47360 * 60.00083 * 10 9 7 30 30 H 1.09004 * 109.47124 * 299.99937 * 10 9 7 31 31 H 0.97004 * 120.00112 * 0.02562 * 11 10 9 32 32 H 0.97000 * 119.99618 * 0.02562 * 14 12 11 33 33 H 1.09002 * 109.46980 * 60.00034 * 15 14 12 34 34 H 1.09000 * 109.47109 * 300.00181 * 15 14 12 35 35 H 1.09003 * 110.93672 * 98.28046 * 18 16 15 36 36 H 1.09001 * 110.93501 * 334.60780 * 18 16 15 37 37 H 1.08010 * 120.00925 * 359.07484 * 20 19 18 38 38 H 1.08003 * 120.11577 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.82069 * 180.17300 * 22 21 20 40 40 H 1.08002 * 119.88610 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 7 5.4867 -2.6363 0.0001 12 6 6.1606 -3.8034 0.0008 13 8 5.5528 -4.8565 0.0008 14 7 7.5084 -3.8034 0.0003 15 6 8.2410 -5.0721 0.0004 16 6 9.7452 -4.7925 0.0004 17 1 10.0213 -4.1727 -0.8528 18 6 10.5485 -6.1145 0.0053 19 6 11.7308 -5.7601 0.8862 20 6 12.9511 -6.3674 1.0848 21 6 13.8698 -5.8056 1.9535 22 6 13.5579 -4.6343 2.6192 23 6 12.3353 -4.0264 2.4245 24 6 11.4031 -4.5880 1.5553 25 8 10.1479 -4.1712 1.2329 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6795 0.8895 28 1 3.8746 -0.6807 -0.8904 29 1 3.6581 -3.1504 -0.8896 30 1 3.6587 -3.1500 0.8904 31 1 5.9717 -1.7962 0.0005 32 1 7.9933 -2.9633 -0.0001 33 1 7.9773 -5.6439 -0.8893 34 1 7.9780 -5.6434 0.8906 35 1 10.8767 -6.3746 -1.0011 36 1 9.9645 -6.9235 0.4442 37 1 13.1905 -7.2823 0.5629 38 1 14.8274 -6.2797 2.1104 39 1 14.2755 -4.1935 3.2954 40 1 12.0995 -3.1120 2.9487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343598045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:42 Heat of formation + Delta-G solvation = -66.535485 kcal Electronic energy + Delta-G solvation = -21591.628680 eV Core-core repulsion = 18177.473091 eV Total energy + Delta-G solvation = -3414.155588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20258 -40.94387 -38.50903 -36.81257 -35.82834 -34.79318 -33.72343 -32.15874 -30.96047 -30.74208 -27.45057 -26.08095 -23.52819 -22.83248 -22.73698 -22.45968 -21.96395 -19.48491 -18.89915 -18.55792 -17.75797 -17.64750 -16.73325 -16.59073 -16.33623 -16.04047 -15.45411 -15.32219 -15.05659 -14.97266 -14.60188 -14.53517 -14.08670 -13.99108 -13.61624 -13.34290 -13.28961 -13.01687 -12.74012 -12.56183 -12.17974 -12.15800 -11.85464 -11.75951 -11.70283 -11.53908 -11.31365 -10.78285 -10.41684 -9.83561 -9.77400 -9.11603 -8.29379 -6.36514 0.34281 0.42259 1.39374 1.42232 1.53488 1.66132 2.12040 2.20243 2.37356 2.76655 3.05472 3.25796 3.33243 3.61974 3.82053 3.94864 4.02206 4.22045 4.31964 4.34949 4.45143 4.48100 4.55994 4.62013 4.66181 4.76383 4.84818 4.90363 5.12096 5.15109 5.38388 5.39938 5.41881 5.44599 5.47223 5.57052 5.66494 5.70576 5.98306 6.22799 6.23784 6.70654 7.09357 7.27719 7.56272 8.87335 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032748 B = 0.002390 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.819929 B =11712.207722 C =12373.028083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.238 1.238 7 C -0.539 4.539 8 H 0.029 0.971 9 C -0.012 4.012 10 C 0.164 3.836 11 N -0.732 5.732 12 C 0.699 3.301 13 O -0.640 6.640 14 N -0.732 5.732 15 C 0.146 3.854 16 C 0.075 3.925 17 H 0.113 0.887 18 C -0.097 4.097 19 C -0.186 4.186 20 C -0.077 4.077 21 C -0.151 4.151 22 C -0.089 4.089 23 C -0.156 4.156 24 C 0.076 3.924 25 O -0.319 6.319 26 H 0.268 0.732 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.410 0.590 32 H 0.412 0.588 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.783 -9.118 0.881 35.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.577 4.577 8 H 0.048 0.952 9 C -0.050 4.050 10 C 0.040 3.960 11 N -0.387 5.387 12 C 0.398 3.602 13 O -0.522 6.522 14 N -0.388 5.388 15 C 0.022 3.978 16 C 0.019 3.981 17 H 0.131 0.869 18 C -0.134 4.134 19 C -0.186 4.186 20 C -0.095 4.095 21 C -0.169 4.169 22 C -0.107 4.107 23 C -0.175 4.175 24 C 0.031 3.969 25 O -0.234 6.234 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.246 0.754 32 H 0.248 0.752 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.116 0.884 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 33.914 -9.824 0.987 35.322 hybrid contribution -0.312 1.258 0.060 1.298 sum 33.602 -8.566 1.047 34.692 Atomic orbital electron populations 1.70074 1.08546 1.28411 1.51983 1.26092 0.95723 1.03886 0.93722 0.85520 0.79596 0.77301 0.79330 1.18908 1.21285 1.16118 1.21248 0.91546 0.93407 1.51498 0.95237 1.19644 0.94397 0.92859 0.98058 1.20888 0.77064 0.98269 0.99818 1.45126 1.07346 1.07317 1.78904 1.16121 0.82338 0.84010 0.77703 1.90882 1.69041 1.32101 1.60136 1.44837 1.03433 1.10529 1.80050 1.21369 0.87706 0.85446 1.03319 1.23700 0.93408 0.94740 0.86220 0.86915 1.21783 0.92875 0.96929 1.01862 1.21035 0.97669 0.96726 1.03205 1.20680 0.91158 0.99968 0.97695 1.21444 1.00886 0.96808 0.97716 1.21234 0.95236 0.95410 0.98844 1.20576 0.93100 1.02257 1.01565 1.19913 0.85343 0.93952 0.97650 1.86872 1.27716 1.68074 1.40729 0.92334 0.94611 0.94510 0.93810 0.94184 0.75405 0.75187 0.88536 0.92251 0.86124 0.88394 0.83574 0.82925 0.82868 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 2 C 0.00 0.16 5.47 84.66 0.46 0.63 16 3 Si 0.96 42.72 27.47 68.60 1.88 44.61 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 7 C -0.54 -31.13 9.66 25.60 0.25 -30.88 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 9 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 10 C 0.16 6.92 5.61 86.38 0.48 7.41 16 11 N -0.73 -24.07 5.56 -478.53 -2.66 -26.73 16 12 C 0.70 23.50 8.57 179.05 1.53 25.03 16 13 O -0.64 -27.48 16.34 -4.00 -0.07 -27.54 16 14 N -0.73 -17.17 5.55 -478.53 -2.65 -19.82 16 15 C 0.15 2.90 5.35 86.38 0.46 3.37 16 16 C 0.08 1.14 3.66 31.17 0.11 1.26 16 17 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 18 C -0.10 -1.18 6.65 30.73 0.20 -0.98 16 19 C -0.19 -2.89 6.27 -19.53 -0.12 -3.02 16 20 C -0.08 -0.93 10.03 22.18 0.22 -0.71 16 21 C -0.15 -1.60 10.07 22.31 0.22 -1.38 16 22 C -0.09 -1.08 10.02 22.21 0.22 -0.86 16 23 C -0.16 -2.61 10.06 22.45 0.23 -2.39 16 24 C 0.08 1.47 7.03 22.68 0.16 1.63 16 25 O -0.32 -6.66 10.80 -95.07 -1.03 -7.68 16 26 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 27 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 28 H 0.04 1.54 7.57 -2.39 -0.02 1.52 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.41 10.53 8.49 -92.71 -0.79 9.74 16 32 H 0.41 7.42 8.49 -92.71 -0.79 6.63 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 1.17 7.92 -2.39 -0.02 1.15 16 37 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 38 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 39 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -77.87 340.08 -0.22 -78.09 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.57 Total: 19.76 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 4.57 Total: -1.29 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -5.02 Total: -105.94 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.09 Total: -35.23 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.61 kcal Total: -77.87 -0.22 -78.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343598045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.557 kcal (2) G-P(sol) polarization free energy of solvation -77.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds