Wall clock time and date at job start Tue Mar 31 2020 06:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48495 * 109.46957 * 239.99745 * 3 2 1 5 5 H 1.48505 * 109.46941 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47177 * 119.99272 * 3 2 1 7 7 C 1.37881 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99655 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46612 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46921 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99964 * 180.02562 * 11 10 9 13 13 O 1.21579 * 120.00412 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99866 * 180.02562 * 12 11 10 15 15 C 1.46493 * 119.99700 * 180.02562 * 14 12 11 16 16 C 1.50708 * 109.47178 * 179.97438 * 15 14 12 17 17 C 1.38261 * 119.97948 * 270.02500 * 16 15 14 18 18 C 1.38295 * 120.04146 * 179.97438 * 17 16 15 19 19 C 1.37831 * 119.96871 * 359.96675 * 18 17 16 20 20 C 1.38773 * 120.01371 * 0.02562 * 19 18 17 21 21 C 1.37967 * 120.01385 * 0.02562 * 20 19 18 22 22 C 1.51082 * 107.29752 * 180.02562 * 20 19 18 23 23 O 1.43951 * 105.95349 * 342.32532 * 22 20 19 24 24 C 1.43941 * 104.94972 * 28.44560 * 23 22 20 25 25 H 0.97002 * 120.00273 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47154 * 60.00025 * 9 7 2 27 27 H 1.09000 * 109.47039 * 299.99077 * 9 7 2 28 28 H 1.09002 * 109.47271 * 60.00154 * 10 9 7 29 29 H 1.08995 * 109.47782 * 300.00212 * 10 9 7 30 30 H 0.97005 * 119.99719 * 0.02562 * 11 10 9 31 31 H 0.96993 * 119.99643 * 359.97438 * 14 12 11 32 32 H 1.08995 * 109.47609 * 59.99800 * 15 14 12 33 33 H 1.08998 * 109.47412 * 299.99521 * 15 14 12 34 34 H 1.08005 * 119.97619 * 359.97172 * 17 16 15 35 35 H 1.08004 * 120.04045 * 179.97438 * 18 17 16 36 36 H 1.08001 * 120.03936 * 179.97438 * 21 20 19 37 37 H 1.09005 * 110.15139 * 223.20795 * 22 20 19 38 38 H 1.08990 * 110.15650 * 101.44695 * 22 20 19 39 39 H 1.09002 * 110.15431 * 90.68060 * 24 23 22 40 40 H 1.09004 * 110.15347 * 212.36657 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0018 13 8 3.4025 -6.0980 0.0023 14 7 1.5128 -7.2652 0.0018 15 6 2.2454 -8.5338 0.0031 16 6 1.2661 -9.6794 0.0035 17 6 0.8163 -10.2033 1.2013 18 6 -0.0827 -11.2542 1.2032 19 6 -0.5310 -11.7790 0.0101 20 6 -0.0799 -11.2534 -1.1924 21 6 0.8178 -10.2057 -1.1942 22 6 -0.7470 -12.0326 -2.3016 23 8 -1.2328 -13.2451 -1.6966 24 6 -1.4900 -12.8977 -0.3236 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8893 30 1 0.5428 -4.9308 0.0011 31 1 0.5429 -7.2652 0.0018 32 1 2.8713 -8.5912 0.8935 33 1 2.8727 -8.5921 -0.8864 34 1 1.1673 -9.7917 2.1361 35 1 -0.4338 -11.6637 2.1389 36 1 1.1694 -9.7966 -2.1299 37 1 -0.0243 -12.2665 -3.0834 38 1 -1.5773 -11.4607 -2.7157 39 1 -2.5190 -12.5570 -0.2088 40 1 -1.3048 -13.7562 0.3221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343983334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:08 Heat of formation + Delta-G solvation = -52.495290 kcal Electronic energy + Delta-G solvation = -21427.659038 eV Core-core repulsion = 18014.112278 eV Total energy + Delta-G solvation = -3413.546760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09614 -39.60416 -38.04068 -35.19022 -34.44676 -32.85838 -31.98327 -31.75190 -29.59254 -28.45319 -26.62703 -24.74507 -23.95835 -22.13266 -21.26191 -20.95873 -20.56262 -18.16240 -17.04257 -16.81589 -16.50622 -16.38111 -15.98304 -15.48278 -15.12606 -14.68773 -14.52008 -14.26877 -14.00256 -13.66160 -13.50221 -13.36569 -13.01967 -12.82118 -12.47519 -12.39907 -12.26087 -11.69657 -11.25994 -11.19211 -11.01199 -10.64761 -10.51002 -10.30886 -9.99732 -9.57548 -9.31449 -9.25588 -9.05761 -8.91207 -8.48115 -8.25108 -6.08837 -4.11526 0.70402 0.91375 2.92945 3.31770 3.35347 3.37553 3.42532 3.49158 3.57626 3.74823 4.17235 4.40144 4.40574 4.52311 4.72600 4.84159 4.91237 4.95133 4.99165 5.10645 5.20321 5.28180 5.30876 5.41524 5.61644 5.66788 5.86444 5.88209 6.17090 6.26218 6.29508 6.40089 6.47222 6.54700 6.77892 6.99648 7.22364 7.56859 7.63628 7.90221 8.25997 8.42380 8.92665 8.98752 9.53115 11.02799 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033570 B = 0.002236 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.873060 B =12517.198758 C =12813.997317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.751 5.751 15 C 0.182 3.818 16 C -0.097 4.097 17 C -0.093 4.093 18 C -0.095 4.095 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.073 4.073 22 C 0.091 3.909 23 O -0.362 6.362 24 C 0.090 3.910 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.393 0.607 31 H 0.395 0.605 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 -26.127 -0.182 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.398 3.602 13 O -0.477 6.477 14 N -0.408 5.408 15 C 0.058 3.942 16 C -0.098 4.098 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.091 4.091 22 C 0.014 3.986 23 O -0.280 6.280 24 C 0.014 3.986 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.226 0.774 31 H 0.228 0.772 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.389 -26.173 -0.293 26.393 hybrid contribution -0.528 1.155 0.145 1.278 sum -3.917 -25.018 -0.148 25.323 Atomic orbital electron populations 1.69945 1.06094 1.26969 1.50380 1.25000 0.94901 0.99412 0.95009 0.86562 0.79502 0.82615 0.78793 1.20103 1.21272 1.20099 1.21019 0.93244 0.90367 1.51364 0.92253 1.19320 0.94251 0.91073 0.97792 1.21599 0.95641 0.80376 1.00667 1.45539 1.09865 1.05295 1.78441 1.16056 0.85617 0.80435 0.78055 1.90892 1.11747 1.86635 1.58401 1.45156 1.09482 1.04215 1.81922 1.19923 0.91803 0.79207 1.03241 1.19931 0.99002 0.97796 0.93026 1.21143 0.96406 0.95550 0.98053 1.20357 0.97512 0.96652 0.96756 1.21104 0.98704 0.98801 0.94298 1.21067 0.98682 0.97937 0.95890 1.20353 0.95645 0.94845 0.98291 1.21766 0.97758 0.84924 0.94112 1.89093 1.85891 1.31154 1.21904 1.21762 0.97032 0.96003 0.83827 0.92806 0.95988 0.95982 0.92766 0.92759 0.77380 0.77163 0.90701 0.90769 0.84951 0.85443 0.85267 0.88346 0.90296 0.90366 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.01 5.61 -4.04 -0.02 2.99 16 11 N -0.74 -13.03 5.56 -65.23 -0.36 -13.39 16 12 C 0.70 12.12 8.57 -86.91 -0.74 11.38 16 13 O -0.60 -12.79 16.34 5.30 0.09 -12.70 16 14 N -0.75 -9.36 5.55 -66.42 -0.37 -9.73 16 15 C 0.18 1.99 5.80 -5.19 -0.03 1.96 16 16 C -0.10 -0.87 5.25 -104.59 -0.55 -1.42 16 17 C -0.09 -0.76 9.70 -39.55 -0.38 -1.14 16 18 C -0.09 -0.71 10.03 -39.71 -0.40 -1.11 16 19 C -0.13 -1.05 6.33 -104.38 -0.66 -1.71 16 20 C -0.14 -1.16 6.33 -104.34 -0.66 -1.82 16 21 C -0.07 -0.63 9.70 -39.66 -0.38 -1.01 16 22 C 0.09 0.68 7.63 36.19 0.28 0.96 16 23 O -0.36 -3.29 11.72 -35.23 -0.41 -3.70 16 24 C 0.09 0.64 7.63 36.19 0.28 0.91 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.39 5.97 8.49 -40.82 -0.35 5.62 16 31 H 0.39 4.04 8.48 -40.82 -0.35 3.69 16 32 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -33.34 344.05 -9.72 -43.06 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.72 Total: 3.42 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -3.84 Total: -3.10 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.00 Total: -48.55 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.33 Total: -16.41 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.34 -9.72 -43.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343983334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.434 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds