Wall clock time and date at job start Tue Mar 31 2020 06:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48495 * 109.46957 * 239.99745 * 3 2 1 5 5 H 1.48505 * 109.46941 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47177 * 119.99272 * 3 2 1 7 7 C 1.37881 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99655 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46612 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46921 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99964 * 180.02562 * 11 10 9 13 13 O 1.21579 * 120.00412 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99866 * 180.02562 * 12 11 10 15 15 C 1.46493 * 119.99700 * 180.02562 * 14 12 11 16 16 C 1.50708 * 109.47178 * 179.97438 * 15 14 12 17 17 C 1.38261 * 119.97948 * 270.02500 * 16 15 14 18 18 C 1.38295 * 120.04146 * 179.97438 * 17 16 15 19 19 C 1.37831 * 119.96871 * 359.96675 * 18 17 16 20 20 C 1.38773 * 120.01371 * 0.02562 * 19 18 17 21 21 C 1.37967 * 120.01385 * 0.02562 * 20 19 18 22 22 C 1.51082 * 107.29752 * 180.02562 * 20 19 18 23 23 O 1.43951 * 105.95349 * 342.32532 * 22 20 19 24 24 C 1.43941 * 104.94972 * 28.44560 * 23 22 20 25 25 H 0.97002 * 120.00273 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47154 * 60.00025 * 9 7 2 27 27 H 1.09000 * 109.47039 * 299.99077 * 9 7 2 28 28 H 1.09002 * 109.47271 * 60.00154 * 10 9 7 29 29 H 1.08995 * 109.47782 * 300.00212 * 10 9 7 30 30 H 0.97005 * 119.99719 * 0.02562 * 11 10 9 31 31 H 0.96993 * 119.99643 * 359.97438 * 14 12 11 32 32 H 1.08995 * 109.47609 * 59.99800 * 15 14 12 33 33 H 1.08998 * 109.47412 * 299.99521 * 15 14 12 34 34 H 1.08005 * 119.97619 * 359.97172 * 17 16 15 35 35 H 1.08004 * 120.04045 * 179.97438 * 18 17 16 36 36 H 1.08001 * 120.03936 * 179.97438 * 21 20 19 37 37 H 1.09005 * 110.15139 * 223.20795 * 22 20 19 38 38 H 1.08990 * 110.15650 * 101.44695 * 22 20 19 39 39 H 1.09002 * 110.15431 * 90.68060 * 24 23 22 40 40 H 1.09004 * 110.15347 * 212.36657 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0018 13 8 3.4025 -6.0980 0.0023 14 7 1.5128 -7.2652 0.0018 15 6 2.2454 -8.5338 0.0031 16 6 1.2661 -9.6794 0.0035 17 6 0.8163 -10.2033 1.2013 18 6 -0.0827 -11.2542 1.2032 19 6 -0.5310 -11.7790 0.0101 20 6 -0.0799 -11.2534 -1.1924 21 6 0.8178 -10.2057 -1.1942 22 6 -0.7470 -12.0326 -2.3016 23 8 -1.2328 -13.2451 -1.6966 24 6 -1.4900 -12.8977 -0.3236 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8893 30 1 0.5428 -4.9308 0.0011 31 1 0.5429 -7.2652 0.0018 32 1 2.8713 -8.5912 0.8935 33 1 2.8727 -8.5921 -0.8864 34 1 1.1673 -9.7917 2.1361 35 1 -0.4338 -11.6637 2.1389 36 1 1.1694 -9.7966 -2.1299 37 1 -0.0243 -12.2665 -3.0834 38 1 -1.5773 -11.4607 -2.7157 39 1 -2.5190 -12.5570 -0.2088 40 1 -1.3048 -13.7562 0.3221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343983334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:07 Heat of formation + Delta-G solvation = -75.476566 kcal Electronic energy + Delta-G solvation = -21428.655581 eV Core-core repulsion = 18014.112278 eV Total energy + Delta-G solvation = -3414.543303 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.72388 -40.94091 -38.76562 -36.70871 -35.73348 -34.80277 -32.78854 -32.49515 -31.29113 -29.16085 -27.59913 -26.38025 -24.82821 -22.94295 -22.71094 -21.99204 -21.81603 -19.51294 -18.41632 -17.70415 -17.46836 -17.29391 -16.96351 -16.69577 -16.49558 -16.14841 -15.36516 -15.31948 -15.25784 -15.00297 -14.70794 -14.26374 -14.09940 -13.62652 -13.61870 -13.42949 -13.21100 -13.03593 -12.90415 -12.52848 -12.35435 -12.21225 -11.85887 -11.69035 -11.51768 -11.27794 -11.05752 -10.59427 -10.36404 -9.90652 -9.72428 -9.54962 -8.23112 -6.33342 0.04335 0.30071 1.42738 1.45192 1.52953 1.80269 2.16513 2.41889 2.63409 2.94523 3.11692 3.13309 3.45832 3.59239 3.69768 3.94252 4.21098 4.33124 4.40524 4.43904 4.48034 4.52780 4.54360 4.60947 4.67070 4.75457 4.87163 4.88186 5.03752 5.24542 5.29040 5.31753 5.43374 5.50711 5.52487 5.60715 5.68306 5.79734 5.87470 6.03585 6.18193 6.79812 7.11577 7.35878 7.59025 8.88598 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033570 B = 0.002236 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.873060 B =12517.198758 C =12813.997317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.699 3.301 13 O -0.639 6.639 14 N -0.729 5.729 15 C 0.185 3.815 16 C -0.103 4.103 17 C -0.096 4.096 18 C -0.095 4.095 19 C -0.135 4.135 20 C -0.148 4.148 21 C -0.078 4.078 22 C 0.088 3.912 23 O -0.382 6.382 24 C 0.087 3.913 25 H 0.266 0.734 26 H 0.008 0.992 27 H 0.009 0.991 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.407 0.593 31 H 0.409 0.591 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 -26.852 0.152 27.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.399 3.601 13 O -0.521 6.521 14 N -0.386 5.386 15 C 0.061 3.939 16 C -0.104 4.104 17 C -0.114 4.114 18 C -0.113 4.113 19 C -0.135 4.135 20 C -0.148 4.148 21 C -0.097 4.097 22 C 0.013 3.987 23 O -0.301 6.301 24 C 0.011 3.989 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.242 0.758 31 H 0.245 0.755 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.799 -26.948 0.041 27.214 hybrid contribution -0.465 1.274 0.046 1.357 sum -4.265 -25.673 0.087 26.025 Atomic orbital electron populations 1.70050 1.07535 1.28051 1.51015 1.25876 0.95807 1.03101 0.94440 0.85497 0.78295 0.78110 0.79145 1.19345 1.20631 1.19316 1.21448 0.93636 0.91905 1.51539 0.92234 1.19124 0.94237 0.91662 0.96331 1.21077 0.94604 0.81064 0.99656 1.45225 1.10386 1.04438 1.78738 1.16137 0.85103 0.81174 0.77718 1.90865 1.13680 1.87304 1.60241 1.45001 1.10169 1.03320 1.80085 1.19957 0.92188 0.78870 1.02838 1.19728 0.99346 0.97574 0.93717 1.21317 0.96318 0.95663 0.98105 1.20613 0.96933 0.96183 0.97600 1.21386 0.98718 0.98975 0.94433 1.21247 0.98844 0.98058 0.96648 1.20433 0.95748 0.95057 0.98457 1.21874 0.98292 0.84572 0.94009 1.89067 1.86091 1.31992 1.22963 1.21933 0.97427 0.96310 0.83209 0.92552 0.97341 0.97304 0.93767 0.93795 0.75817 0.75518 0.91002 0.91333 0.83918 0.83129 0.84732 0.87486 0.89296 0.89058 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 2 C 0.01 0.36 5.46 84.66 0.46 0.83 16 3 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -30.58 9.11 25.60 0.23 -30.35 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.21 5.09 29.85 0.15 1.36 16 10 C 0.16 6.97 5.61 86.38 0.48 7.46 16 11 N -0.73 -25.66 5.56 -478.54 -2.66 -28.32 16 12 C 0.70 23.92 8.57 179.05 1.53 25.46 16 13 O -0.64 -27.39 16.34 -3.96 -0.06 -27.45 16 14 N -0.73 -17.41 5.55 -482.31 -2.68 -20.09 16 15 C 0.18 3.87 5.80 85.64 0.50 4.37 16 16 C -0.10 -1.72 5.25 -19.84 -0.10 -1.83 16 17 C -0.10 -1.38 9.70 22.29 0.22 -1.17 16 18 C -0.10 -1.22 10.03 22.19 0.22 -1.00 16 19 C -0.13 -1.95 6.33 -19.71 -0.12 -2.08 16 20 C -0.15 -2.33 6.33 -19.68 -0.12 -2.45 16 21 C -0.08 -1.27 9.70 22.22 0.22 -1.05 16 22 C 0.09 1.22 7.63 71.36 0.54 1.76 16 23 O -0.38 -6.41 11.72 -148.98 -1.75 -8.16 16 24 C 0.09 1.06 7.63 71.36 0.54 1.60 16 25 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 28 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 30 H 0.41 12.04 8.49 -92.70 -0.79 11.26 16 31 H 0.41 7.69 8.48 -92.71 -0.79 6.90 16 32 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 33 H 0.07 1.54 8.09 -2.39 -0.02 1.52 16 34 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -70.66 344.05 -0.60 -71.26 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.51 Total: 18.27 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 4.75 Total: 2.92 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -5.05 Total: -102.43 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.81 Total: -35.61 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.66 -0.60 -71.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343983334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.218 kcal (2) G-P(sol) polarization free energy of solvation -70.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds