Wall clock time and date at job start Tue Mar 31 2020 06:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47333 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00021 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99795 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00162 * 179.97438 * 13 12 11 16 16 H 1.08991 * 109.68339 * 300.00234 * 15 13 12 17 17 C 1.53288 * 109.68352 * 179.47557 * 15 13 12 18 18 C 1.52932 * 110.44984 * 184.04784 * 17 15 13 19 19 C 1.51401 * 109.70586 * 59.07667 * 18 17 15 20 20 O 1.21435 * 121.34631 * 148.87918 * 19 18 17 21 21 C 1.41525 * 117.29874 * 328.89623 * 19 18 17 22 22 C 1.37281 * 129.83712 * 181.42892 * 21 19 18 23 23 C 1.39923 * 106.74730 * 179.79381 * 22 21 19 24 24 C 1.35944 * 107.97742 * 0.11888 * 23 22 21 25 25 N 1.34049 * 109.03332 * 0.11479 * 24 23 22 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 28 28 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 29 29 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 30 30 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 31 31 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 32 32 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 33 33 H 0.96994 * 120.00492 * 359.97438 * 12 11 10 34 34 H 1.08998 * 109.31180 * 304.34767 * 17 15 13 35 35 H 1.08997 * 109.30716 * 63.95216 * 17 15 13 36 36 H 1.08997 * 109.42741 * 179.14401 * 18 17 15 37 37 H 1.08996 * 109.43132 * 299.05138 * 18 17 15 38 38 H 1.07997 * 126.62433 * 359.75928 * 22 21 19 39 39 H 1.07995 * 126.00968 * 180.11986 * 23 22 21 40 40 H 1.08001 * 125.48458 * 180.17659 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 7 6.0398 -4.0179 -0.0022 13 6 7.3649 -4.2642 -0.0029 14 8 8.1530 -3.3423 -0.0033 15 6 7.8672 -5.6850 -0.0030 16 1 7.5063 -6.2021 0.8859 17 6 9.4000 -5.6907 -0.0171 18 6 9.9281 -7.1223 -0.1186 19 6 9.4062 -7.7705 -1.3834 20 8 10.0528 -8.6104 -1.9760 21 6 8.1344 -7.3576 -1.8471 22 6 7.4127 -7.7863 -2.9334 23 6 6.2183 -7.0574 -2.9370 24 6 6.2390 -6.2127 -1.8721 25 7 7.3903 -6.3777 -1.2055 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 -0.8895 28 1 3.8746 -0.6808 0.8905 29 1 3.6579 -3.1514 0.8880 30 1 3.6585 -3.1495 -0.8920 31 1 5.9148 -2.1220 -0.8910 32 1 5.9149 -2.1236 0.8890 33 1 5.4096 -4.7551 -0.0021 34 1 9.7548 -5.1143 -0.8714 35 1 9.7705 -5.2374 0.9024 36 1 11.0177 -7.1060 -0.1426 37 1 9.5929 -7.6947 0.7463 38 1 7.7097 -8.5400 -3.6475 39 1 5.4203 -7.1498 -3.6587 40 1 5.4538 -5.5207 -1.6053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345132997.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:58 Heat of formation + Delta-G solvation = -30.030386 kcal Electronic energy + Delta-G solvation = -22536.757555 eV Core-core repulsion = 19124.184947 eV Total energy + Delta-G solvation = -3412.572608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.37209 -39.86141 -38.98206 -36.19729 -35.47414 -33.60206 -32.10960 -31.29284 -29.67011 -28.44276 -27.22261 -24.16851 -22.79840 -22.57918 -21.31790 -21.01751 -20.18109 -18.89739 -17.98446 -17.34711 -16.86590 -16.06825 -15.91546 -15.54074 -15.31867 -15.00565 -14.82939 -14.49746 -14.27351 -13.99002 -13.68091 -12.97640 -12.81982 -12.68423 -12.62242 -12.49441 -12.29645 -12.16693 -12.04967 -11.67301 -11.24151 -11.00202 -10.56230 -10.16174 -10.05994 -9.94568 -9.78756 -9.32956 -9.23828 -9.11061 -8.63495 -8.58279 -6.14044 -4.13591 0.74825 1.75344 2.28370 2.69863 2.73920 2.94250 3.24740 3.33128 3.35889 3.72529 3.82307 4.18462 4.36881 4.37416 4.41735 4.53483 4.78652 4.91657 5.09268 5.13722 5.19669 5.28856 5.32194 5.44169 5.45639 5.58038 5.76505 5.80247 5.92456 6.00126 6.25485 6.39812 6.42543 6.57785 6.61822 6.79621 7.09417 7.14730 7.23283 7.26976 7.66532 7.78891 8.41128 8.89182 9.47754 10.99079 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.003064 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.764546 B = 9135.528519 C = 9790.790313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.287 1.287 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.114 4.114 11 C 0.111 3.889 12 N -0.719 5.719 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.113 3.887 16 H 0.121 0.879 17 C -0.110 4.110 18 C -0.169 4.169 19 C 0.423 3.577 20 O -0.460 6.460 21 C -0.102 4.102 22 C -0.082 4.082 23 C -0.216 4.216 24 C 0.043 3.957 25 N -0.418 5.418 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.014 0.986 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.401 0.599 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.773 -15.081 -0.061 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.213 1.213 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.152 4.152 11 C -0.012 4.012 12 N -0.372 5.372 13 C 0.289 3.711 14 O -0.393 6.393 15 C 0.008 3.992 16 H 0.138 0.862 17 C -0.148 4.148 18 C -0.207 4.207 19 C 0.304 3.696 20 O -0.337 6.337 21 C -0.208 4.208 22 C -0.108 4.108 23 C -0.240 4.240 24 C -0.094 4.094 25 N -0.096 5.096 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 17.658 -14.498 -0.021 22.848 hybrid contribution -0.295 0.736 0.141 0.805 sum 17.363 -13.762 0.120 22.156 Atomic orbital electron populations 1.69907 1.06329 1.27060 1.50677 1.25028 0.94746 0.99248 0.94377 0.86781 0.80385 0.83556 0.78596 1.20231 1.18933 1.21294 1.21064 0.89187 0.94550 1.51469 0.90967 1.19494 0.97405 0.91180 0.96724 1.21736 0.90148 1.01436 1.01906 1.21807 0.96576 0.80304 1.02471 1.46475 1.06243 1.10826 1.73640 1.20183 0.83269 0.89884 0.77734 1.90770 1.55158 1.45031 1.48308 1.21960 0.97704 0.91387 0.88160 0.86167 1.21646 0.90164 0.96689 1.06331 1.22232 1.03809 0.96189 0.98449 1.20152 0.83898 0.80213 0.85352 1.90613 1.58485 1.27917 1.56642 1.20028 0.98062 1.01601 1.01149 1.21345 0.93787 0.99739 0.95970 1.21120 1.00357 1.01411 1.01104 1.22113 0.89860 1.02387 0.95029 1.44193 1.14942 1.29196 1.21264 0.92602 0.96258 0.96724 0.91951 0.91918 0.91248 0.91252 0.76346 0.89280 0.87701 0.87595 0.87784 0.83207 0.83261 0.80965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.16 9.66 -34.44 -0.33 -14.49 16 8 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 9 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 10 C -0.11 -1.90 5.27 -26.73 -0.14 -2.04 16 11 C 0.11 1.57 5.67 -4.05 -0.02 1.55 16 12 N -0.72 -7.95 4.59 -60.29 -0.28 -8.22 16 13 C 0.51 5.83 7.08 -10.99 -0.08 5.75 16 14 O -0.52 -7.83 15.96 5.55 0.09 -7.75 16 15 C 0.11 0.95 3.47 -68.80 -0.24 0.71 16 16 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 17 C -0.11 -0.86 4.55 -26.62 -0.12 -0.98 16 18 C -0.17 -1.20 6.11 -27.57 -0.17 -1.37 16 19 C 0.42 4.50 6.95 -32.71 -0.23 4.27 16 20 O -0.46 -6.23 17.81 5.42 0.10 -6.13 16 21 C -0.10 -1.10 6.50 -83.82 -0.54 -1.65 16 22 C -0.08 -0.87 10.82 -39.30 -0.43 -1.29 16 23 C -0.22 -2.10 10.83 -39.77 -0.43 -2.53 16 24 C 0.04 0.41 10.29 -17.41 -0.18 0.24 16 25 N -0.42 -4.03 3.03 -108.52 -0.33 -4.36 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 27 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 28 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.40 3.47 6.50 -40.82 -0.27 3.20 16 34 H 0.09 0.86 7.99 -51.93 -0.42 0.44 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.17 1.42 5.72 -52.49 -0.30 1.12 16 LS Contribution 332.81 15.07 5.02 5.02 Total: -1.00 -33.41 332.81 -7.98 -41.39 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.56 Total: 0.25 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.12 Total: -10.34 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.17 Total: -38.80 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.19 Total: -13.88 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.41 -7.98 -41.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345132997.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.358 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds