Wall clock time and date at job start Tue Mar 31 2020 06:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47333 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00021 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99795 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00162 * 179.97438 * 13 12 11 16 16 H 1.08991 * 109.68339 * 300.00234 * 15 13 12 17 17 C 1.53288 * 109.68352 * 179.47557 * 15 13 12 18 18 C 1.52932 * 110.44984 * 184.04784 * 17 15 13 19 19 C 1.51401 * 109.70586 * 59.07667 * 18 17 15 20 20 O 1.21435 * 121.34631 * 148.87918 * 19 18 17 21 21 C 1.41525 * 117.29874 * 328.89623 * 19 18 17 22 22 C 1.37281 * 129.83712 * 181.42892 * 21 19 18 23 23 C 1.39923 * 106.74730 * 179.79381 * 22 21 19 24 24 C 1.35944 * 107.97742 * 0.11888 * 23 22 21 25 25 N 1.34049 * 109.03332 * 0.11479 * 24 23 22 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 28 28 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 29 29 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 30 30 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 31 31 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 32 32 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 33 33 H 0.96994 * 120.00492 * 359.97438 * 12 11 10 34 34 H 1.08998 * 109.31180 * 304.34767 * 17 15 13 35 35 H 1.08997 * 109.30716 * 63.95216 * 17 15 13 36 36 H 1.08997 * 109.42741 * 179.14401 * 18 17 15 37 37 H 1.08996 * 109.43132 * 299.05138 * 18 17 15 38 38 H 1.07997 * 126.62433 * 359.75928 * 22 21 19 39 39 H 1.07995 * 126.00968 * 180.11986 * 23 22 21 40 40 H 1.08001 * 125.48458 * 180.17659 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 7 6.0398 -4.0179 -0.0022 13 6 7.3649 -4.2642 -0.0029 14 8 8.1530 -3.3423 -0.0033 15 6 7.8672 -5.6850 -0.0030 16 1 7.5063 -6.2021 0.8859 17 6 9.4000 -5.6907 -0.0171 18 6 9.9281 -7.1223 -0.1186 19 6 9.4062 -7.7705 -1.3834 20 8 10.0528 -8.6104 -1.9760 21 6 8.1344 -7.3576 -1.8471 22 6 7.4127 -7.7863 -2.9334 23 6 6.2183 -7.0574 -2.9370 24 6 6.2390 -6.2127 -1.8721 25 7 7.3903 -6.3777 -1.2055 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 -0.8895 28 1 3.8746 -0.6808 0.8905 29 1 3.6579 -3.1514 0.8880 30 1 3.6585 -3.1495 -0.8920 31 1 5.9148 -2.1220 -0.8910 32 1 5.9149 -2.1236 0.8890 33 1 5.4096 -4.7551 -0.0021 34 1 9.7548 -5.1143 -0.8714 35 1 9.7705 -5.2374 0.9024 36 1 11.0177 -7.1060 -0.1426 37 1 9.5929 -7.6947 0.7463 38 1 7.7097 -8.5400 -3.6475 39 1 5.4203 -7.1498 -3.6587 40 1 5.4538 -5.5207 -1.6053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345132997.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:57 Heat of formation + Delta-G solvation = -51.583123 kcal Electronic energy + Delta-G solvation = -22537.692152 eV Core-core repulsion = 19124.184947 eV Total energy + Delta-G solvation = -3413.507205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.13026 -40.80826 -39.80978 -37.29496 -36.33914 -35.26369 -33.54023 -32.39454 -30.44003 -29.43734 -28.53208 -25.32523 -23.98574 -23.28530 -22.38033 -22.07010 -21.33906 -19.64448 -18.99125 -18.77527 -18.08347 -17.13237 -16.75737 -16.53027 -16.32104 -16.05105 -15.81007 -15.70856 -15.26399 -15.04872 -14.78257 -14.61249 -13.83230 -13.74814 -13.65043 -13.37394 -13.34927 -13.17894 -12.94925 -12.74865 -12.69182 -12.26049 -11.98204 -11.80303 -11.60166 -11.33419 -11.19985 -10.84178 -10.75707 -10.26486 -9.87273 -9.36096 -8.28857 -6.32628 -0.04131 0.92019 1.37089 1.39442 1.50075 1.51773 1.87008 1.90770 2.14492 2.36481 3.03091 3.07429 3.12074 3.46629 3.70441 3.76829 3.93591 4.05241 4.14051 4.19194 4.32078 4.38128 4.46318 4.48319 4.74466 4.83829 4.87482 4.87952 4.97802 5.01871 5.03532 5.20658 5.23724 5.47941 5.56116 5.63805 5.65737 5.80694 6.06586 6.25948 6.27832 6.49574 6.76341 6.90454 7.32500 8.87513 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.003064 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.764546 B = 9135.528519 C = 9790.790313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.246 1.246 6 H -0.288 1.288 7 C -0.529 4.529 8 H 0.039 0.961 9 C -0.013 4.013 10 C -0.102 4.102 11 C 0.125 3.875 12 N -0.710 5.710 13 C 0.509 3.491 14 O -0.555 6.555 15 C 0.117 3.883 16 H 0.158 0.842 17 C -0.106 4.106 18 C -0.158 4.158 19 C 0.419 3.581 20 O -0.500 6.500 21 C -0.119 4.119 22 C -0.098 4.098 23 C -0.223 4.223 24 C 0.040 3.960 25 N -0.415 5.415 26 H 0.265 0.735 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.414 0.586 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.152 0.848 39 H 0.163 0.837 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.308 -15.118 0.918 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.170 1.170 6 H -0.214 1.214 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.140 4.140 11 C 0.001 3.999 12 N -0.363 5.363 13 C 0.294 3.706 14 O -0.432 6.432 15 C 0.013 3.987 16 H 0.175 0.825 17 C -0.144 4.144 18 C -0.195 4.195 19 C 0.303 3.697 20 O -0.379 6.379 21 C -0.226 4.226 22 C -0.124 4.124 23 C -0.247 4.247 24 C -0.098 4.098 25 N -0.093 5.093 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.253 0.747 34 H 0.085 0.915 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.170 0.830 39 H 0.181 0.819 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 19.194 -14.564 0.968 24.113 hybrid contribution -0.855 0.688 -0.193 1.115 sum 18.339 -13.876 0.775 23.010 Atomic orbital electron populations 1.70060 1.08268 1.28088 1.52780 1.25981 0.95537 1.03418 0.94330 0.85721 0.79555 0.78626 0.79131 1.19276 1.16992 1.21371 1.21479 0.91990 0.93209 1.50054 0.94275 1.19464 0.93967 0.94789 0.96835 1.21505 0.91862 0.98149 1.02501 1.21412 0.94533 0.81946 1.01990 1.46277 1.06692 1.10039 1.73317 1.20615 0.82719 0.90796 0.76502 1.90763 1.56008 1.46515 1.49889 1.22110 0.98137 0.89466 0.88995 0.82454 1.21646 0.89605 0.96830 1.06310 1.22212 1.04365 0.95558 0.97350 1.20680 0.83514 0.79426 0.86083 1.90597 1.59387 1.29836 1.58067 1.20204 0.98554 1.02265 1.01606 1.21584 0.94385 1.00169 0.96297 1.21373 1.00473 1.01243 1.01566 1.22379 0.90085 1.02369 0.94931 1.44257 1.14705 1.28835 1.21481 0.92574 0.96148 0.96146 0.91408 0.91403 0.92086 0.91549 0.74732 0.91528 0.85828 0.86504 0.84909 0.82982 0.81896 0.79689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 2 C 0.00 0.24 5.47 84.66 0.46 0.70 16 3 Si 0.95 42.83 27.47 68.60 1.88 44.71 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 6 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.53 -28.62 9.66 25.60 0.25 -28.37 16 8 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 9 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 10 C -0.10 -3.19 5.27 30.59 0.16 -3.03 16 11 C 0.12 3.24 5.67 86.38 0.49 3.73 16 12 N -0.71 -13.74 4.59 -463.06 -2.13 -15.86 16 13 C 0.51 10.40 7.08 87.66 0.62 11.02 16 14 O -0.55 -15.71 15.96 -3.04 -0.05 -15.76 16 15 C 0.12 1.62 3.47 44.29 0.15 1.77 16 16 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 17 C -0.11 -1.36 4.55 30.67 0.14 -1.22 16 18 C -0.16 -1.81 6.11 30.05 0.18 -1.62 16 19 C 0.42 8.45 6.95 26.72 0.19 8.63 16 20 O -0.50 -13.45 17.81 -3.51 -0.06 -13.52 16 21 C -0.12 -2.44 6.50 38.63 0.25 -2.19 16 22 C -0.10 -2.02 10.82 22.45 0.24 -1.77 16 23 C -0.22 -4.04 10.83 22.14 0.24 -3.80 16 24 C 0.04 0.68 10.29 83.82 0.86 1.55 16 25 N -0.41 -7.10 3.03 -497.24 -1.51 -8.61 16 26 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.02 0.86 7.20 -2.38 -0.02 0.84 16 28 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 29 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.41 5.86 6.50 -92.71 -0.60 5.25 16 34 H 0.07 1.19 7.99 -2.39 -0.02 1.17 16 35 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.19 2.58 5.72 -2.91 -0.02 2.57 16 Total: -1.00 -73.66 332.81 3.20 -70.46 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.39 Total: 11.36 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.36 Total: -15.03 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -3.33 Total: -82.22 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.11 Total: -29.28 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.71 kcal Total: -73.66 3.20 -70.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345132997.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.882 kcal (2) G-P(sol) polarization free energy of solvation -73.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds