Wall clock time and date at job start Tue Mar 31 2020 06:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00115 * 2 1 4 4 H 1.48506 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47420 * 299.99939 * 3 2 1 6 6 H 1.48496 * 109.47235 * 60.00375 * 3 2 1 7 7 C 1.37875 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00123 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47201 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46841 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99955 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99937 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99915 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99824 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.42043 * 325.12304 * 15 14 12 17 17 C 1.52966 * 109.42364 * 85.00368 * 15 14 12 18 18 O 1.43212 * 108.47921 * 169.21451 * 17 15 14 19 19 C 1.42723 * 113.12642 * 289.30620 * 18 17 15 20 20 C 1.50663 * 110.25197 * 51.79101 * 19 18 17 21 21 C 1.38645 * 118.70641 * 164.10533 * 20 19 18 22 22 C 1.38052 * 120.30202 * 179.78625 * 21 20 19 23 23 C 1.38266 * 119.89067 * 359.94458 * 22 21 20 24 24 C 1.38067 * 119.86450 * 0.05610 * 23 22 21 25 25 C 1.37903 * 121.51117 * 343.94037 * 20 19 18 26 26 H 0.96998 * 119.99759 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47109 * 59.99774 * 9 7 2 28 28 H 1.08999 * 109.47040 * 300.00268 * 9 7 2 29 29 H 1.08999 * 109.47170 * 59.99938 * 10 9 7 30 30 H 1.08999 * 109.47531 * 299.99596 * 10 9 7 31 31 H 0.97003 * 120.00220 * 0.02562 * 11 10 9 32 32 H 0.97003 * 120.00260 * 0.02562 * 14 12 11 33 33 H 1.08992 * 109.63468 * 49.51675 * 17 15 14 34 34 H 1.09008 * 109.80465 * 289.00815 * 17 15 14 35 35 H 1.09001 * 109.33857 * 291.55449 * 19 18 17 36 36 H 1.08995 * 109.21217 * 171.95164 * 19 18 17 37 37 H 1.07996 * 119.84720 * 359.51940 * 21 20 19 38 38 H 1.07998 * 120.05565 * 179.91641 * 22 21 20 39 39 H 1.08001 * 120.06103 * 180.02562 * 23 22 21 40 40 H 1.08003 * 119.85469 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 7 1.5127 -4.9308 -0.0033 12 6 2.1865 -6.0980 -0.0047 13 8 3.4024 -6.0980 -0.0051 14 7 1.5126 -7.2652 -0.0047 15 6 2.2450 -8.5339 -0.0057 16 1 3.1562 -8.4259 -0.5941 17 6 2.6092 -8.9122 1.4310 18 8 3.0934 -10.2600 1.4367 19 6 2.0698 -11.2243 1.1933 20 6 1.3038 -10.8681 -0.0542 21 6 0.5034 -11.8350 -0.6431 22 6 -0.2163 -11.5430 -1.7844 23 6 -0.1401 -10.2804 -2.3428 24 6 0.6565 -9.3166 -1.7573 25 6 1.3810 -9.6097 -0.6128 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8880 29 1 2.8719 -3.6051 0.8873 30 1 2.8719 -3.6036 -0.8927 31 1 0.5426 -4.9308 -0.0033 32 1 0.5425 -7.2652 -0.0040 33 1 1.7255 -8.8378 2.0646 34 1 3.3846 -8.2429 1.8039 35 1 1.3865 -11.2476 2.0422 36 1 2.5250 -12.2069 1.0692 37 1 0.4461 -12.8224 -0.2095 38 1 -0.8374 -12.2996 -2.2406 39 1 -0.7023 -10.0488 -3.2354 40 1 0.7155 -8.3303 -2.1934 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416706210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:48 Heat of formation + Delta-G solvation = -78.701945 kcal Electronic energy + Delta-G solvation = -22284.654952 eV Core-core repulsion = 18869.971786 eV Total energy + Delta-G solvation = -3414.683166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.78544 -40.60064 -38.55072 -36.86584 -36.02554 -34.83131 -32.70090 -32.52349 -31.18669 -29.89438 -26.81652 -26.35317 -24.89213 -23.32772 -22.77564 -21.92710 -21.27375 -19.62204 -18.44693 -18.32863 -17.57363 -17.13824 -16.72890 -16.53493 -16.40122 -16.23367 -15.68609 -15.31968 -15.14357 -14.99393 -14.71698 -14.32227 -14.16880 -14.02089 -13.49189 -13.21478 -13.18877 -12.96355 -12.65512 -12.51225 -12.24832 -12.06236 -11.71424 -11.69594 -11.51466 -11.25541 -11.13915 -10.60826 -10.35648 -9.91871 -9.69466 -9.58255 -8.24021 -6.33939 0.24336 0.37098 1.41320 1.42319 1.55098 1.65880 2.09433 2.41245 2.70509 2.85967 3.11057 3.35813 3.40986 3.68768 3.75606 4.00156 4.05787 4.21402 4.39505 4.44341 4.47539 4.52696 4.56589 4.62766 4.68140 4.81897 4.87268 4.97942 5.04097 5.22576 5.30256 5.44308 5.50702 5.55182 5.58115 5.60027 5.78687 5.95626 6.00693 6.05188 6.17513 6.79500 7.06263 7.35437 7.53726 8.88113 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030185 B = 0.002785 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.402615 B =10052.584529 C =10685.295621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.161 3.839 11 N -0.730 5.730 12 C 0.701 3.299 13 O -0.634 6.634 14 N -0.721 5.721 15 C 0.181 3.819 16 H 0.078 0.922 17 C 0.056 3.944 18 O -0.387 6.387 19 C 0.091 3.909 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.106 4.106 26 H 0.266 0.734 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.407 0.593 32 H 0.411 0.589 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 -26.862 -0.778 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.385 5.385 12 C 0.401 3.599 13 O -0.515 6.515 14 N -0.379 5.379 15 C 0.076 3.924 16 H 0.096 0.904 17 C -0.023 4.023 18 O -0.304 6.304 19 C 0.015 3.985 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.106 4.106 26 H 0.074 0.926 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.243 0.757 32 H 0.248 0.752 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.146 0.854 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.159 0.841 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.663 -26.789 -0.736 26.931 hybrid contribution -0.742 1.392 -0.201 1.591 sum -3.405 -25.396 -0.938 25.641 Atomic orbital electron populations 1.70059 1.07501 1.27913 1.51137 1.25855 0.95795 1.03048 0.94451 0.85403 0.78977 0.78819 0.77890 1.19014 1.20233 1.20206 1.21497 0.93607 0.91913 1.51345 0.92327 1.19126 0.94219 0.91603 0.96392 1.21091 0.94616 0.80960 0.99702 1.45209 1.10420 1.04301 1.78544 1.16108 0.85140 0.81101 0.77558 1.90883 1.13570 1.87144 1.59936 1.44908 1.10016 1.02875 1.80124 1.19947 0.94265 0.80847 0.97381 0.90415 1.22939 1.00695 0.83553 0.95068 1.88095 1.34991 1.15227 1.92126 1.21794 0.90026 0.93157 0.93520 1.20463 0.99363 0.93596 0.98303 1.21309 0.96024 0.99633 0.96127 1.21523 0.98822 0.97006 0.95684 1.21439 0.98635 0.93579 1.00552 1.21174 0.96998 1.00310 0.95009 1.19536 0.99449 0.94317 0.97342 0.92554 0.97282 0.97227 0.93695 0.93806 0.75721 0.75217 0.90960 0.89466 0.89728 0.85396 0.82786 0.83052 0.84070 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.20 13.29 21.45 0.28 -53.91 16 2 C 0.01 0.40 5.46 84.65 0.46 0.87 16 3 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.55 -30.54 9.11 25.60 0.23 -30.30 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.16 6.98 5.61 86.38 0.48 7.47 16 11 N -0.73 -25.54 5.56 -478.53 -2.66 -28.20 16 12 C 0.70 24.33 8.53 179.05 1.53 25.85 16 13 O -0.63 -27.51 16.00 -3.99 -0.06 -27.57 16 14 N -0.72 -18.31 4.45 -461.39 -2.05 -20.36 16 15 C 0.18 4.56 2.73 44.25 0.12 4.68 16 16 H 0.08 2.42 7.57 -2.39 -0.02 2.40 16 17 C 0.06 1.34 6.42 71.97 0.46 1.80 16 18 O -0.39 -8.87 10.80 -148.98 -1.61 -10.48 16 19 C 0.09 1.37 6.66 71.22 0.47 1.85 16 20 C -0.12 -1.96 5.80 -19.86 -0.12 -2.08 16 21 C -0.11 -1.39 9.67 22.32 0.22 -1.17 16 22 C -0.11 -1.34 10.05 22.23 0.22 -1.12 16 23 C -0.12 -1.84 10.05 22.24 0.22 -1.62 16 24 C -0.12 -2.23 9.06 22.31 0.20 -2.02 16 25 C -0.11 -2.19 5.48 -19.85 -0.11 -2.30 16 26 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.41 11.99 8.49 -92.71 -0.79 11.21 16 32 H 0.41 8.15 8.33 -92.71 -0.77 7.37 16 33 H 0.07 1.49 8.07 -2.39 -0.02 1.48 16 34 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.12 2.38 7.73 -2.91 -0.02 2.35 16 Total: -1.00 -70.62 338.06 -0.02 -70.64 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -0.50 Total: 20.85 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 4.56 Total: 3.27 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -4.43 Total: -102.47 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.67 Total: -38.05 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.62 -0.02 -70.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416706210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.062 kcal (2) G-P(sol) polarization free energy of solvation -70.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds