Wall clock time and date at job start Tue Mar 31 2020 06:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00008 * 2 1 4 4 H 1.48503 * 109.47064 * 269.99920 * 3 2 1 5 5 H 1.48499 * 109.47066 * 30.00061 * 3 2 1 6 6 H 1.48503 * 109.47068 * 150.00472 * 3 2 1 7 7 C 1.37880 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99840 * 359.97438 * 7 2 1 10 10 C 1.53010 * 109.46802 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46723 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46827 * 304.99979 * 11 10 9 13 13 N 1.46896 * 109.47177 * 65.00080 * 11 10 9 14 14 C 1.50699 * 109.46662 * 185.00302 * 11 10 9 15 15 O 1.21301 * 119.99509 * 260.00094 * 14 11 10 16 16 N 1.34768 * 120.00384 * 80.00262 * 14 11 10 17 17 C 1.40109 * 120.00440 * 175.35998 * 16 14 11 18 18 C 1.38865 * 120.19153 * 214.77562 * 17 16 14 19 19 C 1.37859 * 120.27728 * 179.97438 * 18 17 16 20 20 C 1.39298 * 120.33491 * 0.55977 * 19 18 17 21 21 C 1.38885 * 118.98861 * 359.40257 * 20 19 18 22 22 C 1.37700 * 120.85427 * 0.42339 * 21 20 19 23 23 C 1.51659 * 107.04655 * 180.68905 * 21 20 19 24 24 C 1.54705 * 101.93259 * 15.48773 * 23 21 20 25 25 O 1.36241 * 129.79852 * 179.09456 * 20 19 18 26 26 H 0.96998 * 119.99966 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47209 * 299.99689 * 9 7 2 28 28 H 1.08997 * 109.47079 * 60.00120 * 9 7 2 29 29 H 1.08993 * 109.46999 * 299.99835 * 10 9 7 30 30 H 1.08997 * 109.46733 * 59.99935 * 10 9 7 31 31 H 1.00904 * 111.00193 * 59.99702 * 13 11 10 32 32 H 1.00895 * 111.00311 * 183.95233 * 13 11 10 33 33 H 0.97001 * 120.00079 * 355.35392 * 16 14 11 34 34 H 1.07997 * 119.86123 * 0.17441 * 18 17 16 35 35 H 1.08005 * 119.83814 * 180.27791 * 19 18 17 36 36 H 1.08002 * 120.03742 * 179.76821 * 22 21 20 37 37 H 1.08998 * 110.94368 * 133.64335 * 23 21 20 38 38 H 1.09003 * 110.93966 * 257.29664 * 23 21 20 39 39 H 1.08995 * 110.74909 * 92.98804 * 24 23 21 40 40 H 1.09004 * 110.74815 * 216.16256 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9872 -0.0012 12 1 0.7891 -5.0071 0.8414 13 7 0.7271 -5.1183 -1.2556 14 6 2.4550 -6.1299 0.1215 15 8 2.7858 -6.7533 -0.8651 16 7 2.9592 -6.4591 1.3271 17 6 3.7887 -7.5808 1.4571 18 6 3.7427 -8.3535 2.6100 19 6 4.5578 -9.4578 2.7395 20 6 5.4431 -9.8022 1.7206 21 6 5.4816 -9.0241 0.5708 22 6 4.6666 -7.9224 0.4360 23 6 6.5128 -9.6449 -0.3518 24 6 6.7048 -11.0445 0.2788 25 8 6.3367 -10.8283 1.6516 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5571 0.8896 28 1 0.6240 -2.5567 -0.8903 29 1 2.8712 -3.6040 -0.8922 30 1 2.8726 -3.6047 0.8877 31 1 1.3460 -5.1025 -2.0523 32 1 0.1627 -5.9547 -1.2527 33 1 2.7478 -5.9196 2.1050 34 1 3.0633 -8.0902 3.4071 35 1 4.5130 -10.0564 3.6373 36 1 4.7100 -7.3245 -0.4623 37 1 6.1279 -9.7253 -1.3684 38 1 7.4435 -9.0779 -0.3334 39 1 6.0421 -11.7728 -0.1886 40 1 7.7440 -11.3641 0.2006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424094048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:13 Heat of formation + Delta-G solvation = -72.741249 kcal Electronic energy + Delta-G solvation = -22217.983998 eV Core-core repulsion = 18803.559308 eV Total energy + Delta-G solvation = -3414.424690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.21399 -41.28424 -38.63174 -36.80249 -35.43509 -34.82024 -33.65109 -31.94044 -30.42410 -30.08704 -28.05167 -25.75080 -24.55381 -23.30381 -22.73613 -22.17541 -21.15746 -18.96861 -18.54974 -18.27608 -18.07744 -17.45365 -16.94003 -16.86835 -16.46359 -15.81596 -15.76771 -15.19101 -15.03683 -14.68029 -14.28209 -14.20982 -14.00895 -13.82204 -13.77081 -13.48771 -13.41321 -12.81024 -12.69614 -12.52252 -12.31256 -12.25691 -11.96989 -11.70864 -11.60097 -11.23943 -10.98930 -10.83805 -10.48484 -9.92319 -9.68062 -8.75594 -8.13633 -6.23587 0.13798 0.27628 1.41539 1.43046 1.43906 1.53894 1.96495 2.34378 2.44943 2.66107 3.19710 3.37212 3.53543 3.64177 3.81363 3.90093 4.08296 4.10836 4.17658 4.25057 4.29158 4.48640 4.64506 4.71041 4.77276 4.83023 4.85738 4.92218 5.00790 5.24809 5.26425 5.32731 5.35293 5.58056 5.65070 5.85389 5.99446 6.06465 6.16607 6.30827 6.34939 6.50309 6.95464 7.01529 7.44602 8.97509 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027641 B = 0.002841 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.747528 B = 9851.810902 C =10034.628562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.083 4.083 11 C 0.090 3.910 12 H 0.117 0.883 13 N -0.817 5.817 14 C 0.489 3.511 15 O -0.561 6.561 16 N -0.657 5.657 17 C 0.103 3.897 18 C -0.102 4.102 19 C -0.121 4.121 20 C 0.073 3.927 21 C -0.172 4.172 22 C -0.093 4.093 23 C -0.112 4.112 24 C 0.051 3.949 25 O -0.320 6.320 26 H 0.262 0.738 27 H -0.003 1.003 28 H 0.006 0.994 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.346 0.654 32 H 0.348 0.652 33 H 0.427 0.573 34 H 0.166 0.834 35 H 0.155 0.845 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.887 -22.179 4.867 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.122 4.122 11 C -0.026 4.026 12 H 0.135 0.865 13 N -0.346 5.346 14 C 0.276 3.724 15 O -0.439 6.439 16 N -0.303 5.303 17 C 0.009 3.991 18 C -0.122 4.122 19 C -0.140 4.140 20 C 0.028 3.972 21 C -0.173 4.173 22 C -0.114 4.114 23 C -0.149 4.149 24 C -0.023 4.023 25 O -0.235 6.235 26 H 0.071 0.929 27 H 0.015 0.985 28 H 0.025 0.975 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.266 0.734 34 H 0.183 0.817 35 H 0.173 0.827 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.654 -21.917 4.520 24.785 hybrid contribution 0.582 0.539 -0.245 0.830 sum 11.236 -21.378 4.275 24.526 Atomic orbital electron populations 1.70097 1.07595 1.27504 1.51783 1.25882 0.95683 1.02969 0.95036 0.85560 0.78798 0.79084 0.78262 1.20258 1.20776 1.18797 1.21742 0.93369 0.92779 1.50290 0.92637 1.18828 0.93867 0.91189 0.95927 1.21423 0.97784 0.91987 1.00987 1.21665 0.93470 0.91491 0.95960 0.86495 1.58979 1.27078 1.45348 1.03200 1.22700 0.81586 0.85490 0.82613 1.90641 1.60974 1.54431 1.37826 1.43558 1.47425 1.27436 1.11906 1.17823 0.93862 0.90944 0.96451 1.20931 1.00255 0.93366 0.97685 1.20357 0.95235 0.98937 0.99451 1.19818 0.92082 0.89383 0.95951 1.20925 1.00630 0.97574 0.98212 1.20372 0.94107 0.97267 0.99623 1.21901 0.97818 0.95719 0.99453 1.24072 1.03875 0.96365 0.77999 1.86799 1.56667 1.50089 1.29895 0.92933 0.98488 0.97546 0.93811 0.91246 0.84017 0.83893 0.73373 0.81660 0.82695 0.86312 0.88343 0.88234 0.89571 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 8 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.04 1.98 4.86 29.85 0.15 2.12 16 10 C -0.08 -3.22 4.78 30.60 0.15 -3.07 16 11 C 0.09 2.81 3.15 44.17 0.14 2.95 16 12 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 13 N -0.82 -26.40 8.44 -171.81 -1.45 -27.85 16 14 C 0.49 14.39 6.92 87.66 0.61 15.00 16 15 O -0.56 -19.45 13.70 -3.10 -0.04 -19.49 16 16 N -0.66 -15.59 5.35 -303.32 -1.62 -17.21 16 17 C 0.10 2.54 6.31 38.13 0.24 2.78 16 18 C -0.10 -1.94 9.94 22.33 0.22 -1.72 16 19 C -0.12 -2.33 10.06 22.44 0.23 -2.11 16 20 C 0.07 1.66 7.04 22.68 0.16 1.82 16 21 C -0.17 -4.12 6.26 -19.53 -0.12 -4.24 16 22 C -0.09 -2.58 8.70 22.31 0.19 -2.39 16 23 C -0.11 -1.90 7.12 30.74 0.22 -1.68 16 24 C 0.05 0.71 8.01 72.56 0.58 1.29 16 25 O -0.32 -6.66 11.11 -96.30 -1.07 -7.73 16 26 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.35 11.45 8.58 -89.69 -0.77 10.68 16 32 H 0.35 9.60 9.06 -89.70 -0.81 8.79 16 33 H 0.43 7.73 8.82 -92.71 -0.82 6.91 16 34 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.12 3.79 6.24 -2.91 -0.02 3.77 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -71.79 338.20 0.27 -71.52 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: -1.31 Total: 29.40 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 3.45 Total: -18.86 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -2.79 Total: -100.93 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.11 Total: -27.23 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.79 0.27 -71.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424094048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.222 kcal (2) G-P(sol) polarization free energy of solvation -71.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds