Wall clock time and date at job start Tue Mar 31 2020 06:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99977 * 2 1 4 4 H 1.48504 * 109.47560 * 270.00625 * 3 2 1 5 5 H 1.48507 * 109.47063 * 30.00584 * 3 2 1 6 6 H 1.48497 * 109.47050 * 150.00362 * 3 2 1 7 7 C 1.37876 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99388 * 180.27012 * 7 2 1 9 9 C 1.50695 * 120.00369 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47346 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99925 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00147 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99961 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00063 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46733 * 174.81386 * 14 13 11 16 16 H 1.09000 * 109.43895 * 56.09401 * 15 14 13 17 17 C 1.53070 * 109.43710 * 296.22033 * 15 14 13 18 18 C 1.53422 * 108.29969 * 191.78351 * 17 15 14 19 19 O 1.42830 * 108.36037 * 64.75056 * 18 17 15 20 20 C 1.35841 * 117.84462 * 310.78374 * 19 18 17 21 21 C 1.39148 * 118.49124 * 197.08192 * 20 19 18 22 22 C 1.37966 * 120.21687 * 180.23391 * 21 20 19 23 23 C 1.38288 * 119.95574 * 0.02562 * 22 21 20 24 24 C 1.38104 * 119.98616 * 359.91575 * 23 22 21 25 25 C 1.38374 * 121.81298 * 17.17556 * 20 19 18 26 26 H 0.97000 * 120.00070 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.47270 * 300.00285 * 9 7 2 28 28 H 1.08997 * 109.47555 * 59.99861 * 9 7 2 29 29 H 0.96997 * 119.99755 * 359.97438 * 10 9 7 30 30 H 0.97005 * 120.00094 * 359.97438 * 13 11 10 31 31 H 1.08992 * 109.47169 * 294.81240 * 14 13 11 32 32 H 1.09005 * 109.46737 * 54.82068 * 14 13 11 33 33 H 1.08996 * 109.70115 * 311.48869 * 17 15 14 34 34 H 1.09004 * 109.69720 * 72.08927 * 17 15 14 35 35 H 1.09002 * 109.68073 * 305.03277 * 18 17 15 36 36 H 1.08998 * 109.71715 * 184.48976 * 18 17 15 37 37 H 1.07998 * 119.89157 * 0.20801 * 21 20 19 38 38 H 1.08001 * 120.02460 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.01051 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.84291 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 0.0039 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5584 -5.1055 0.0009 13 7 2.6296 -5.9077 -0.0005 14 6 2.1413 -7.2890 0.0006 15 6 3.3256 -8.2487 -0.1307 16 1 4.0397 -8.0553 0.6698 17 6 4.0082 -8.0334 -1.4838 18 6 4.9904 -9.1886 -1.7171 19 8 4.2421 -10.4003 -1.8261 20 6 3.3126 -10.6602 -0.8702 21 6 2.8368 -11.9616 -0.7434 22 6 1.8889 -12.2643 0.2123 23 6 1.4088 -11.2720 1.0473 24 6 1.8797 -9.9795 0.9251 25 6 2.8329 -9.6701 -0.0309 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6241 -2.5568 -0.8902 29 1 3.1567 -3.4354 -0.0009 30 1 3.5833 -5.7305 -0.0017 31 1 1.6146 -7.4874 0.9340 32 1 1.4610 -7.4345 -0.8386 33 1 3.2591 -8.0224 -2.2755 34 1 4.5492 -7.0871 -1.4759 35 1 5.6816 -9.2581 -0.8771 36 1 5.5477 -9.0171 -2.6380 37 1 3.2104 -12.7372 -1.3955 38 1 1.5214 -13.2754 0.3077 39 1 0.6665 -11.5079 1.7954 40 1 1.5034 -9.2064 1.5787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426424727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:27 Heat of formation + Delta-G solvation = -53.923735 kcal Electronic energy + Delta-G solvation = -22253.652512 eV Core-core repulsion = 18840.043810 eV Total energy + Delta-G solvation = -3413.608702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.06348 -39.16719 -37.70533 -36.22186 -34.11408 -33.07756 -32.17769 -30.93538 -30.39862 -28.08730 -26.58591 -24.34900 -23.57760 -22.58596 -21.80594 -20.30695 -20.03062 -18.29768 -17.86047 -16.80797 -16.51116 -16.02541 -15.57140 -15.37046 -15.03785 -14.64933 -14.40337 -14.09403 -14.04805 -13.63162 -13.48574 -13.34086 -12.92274 -12.67646 -12.37346 -11.96491 -11.89354 -11.76010 -11.48180 -11.18741 -10.98523 -10.95166 -10.88509 -10.54246 -10.30119 -9.42891 -9.36729 -9.02626 -8.78584 -8.67405 -8.37271 -7.75673 -6.15082 -4.21707 1.08657 1.22515 3.04120 3.24604 3.28133 3.31915 3.36806 3.54612 3.95114 4.30402 4.32216 4.35969 4.45691 4.58191 4.85656 4.88727 5.02039 5.02948 5.11945 5.20765 5.21009 5.26418 5.28125 5.35962 5.62293 5.71342 5.74741 5.88696 5.99636 6.08176 6.26482 6.33801 6.55907 6.82877 7.11099 7.21377 7.51758 7.55201 7.57836 7.90823 8.04503 8.76776 8.94436 9.33569 9.48432 10.95210 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.002749 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.178419 B =10184.338288 C =10814.873147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.692 3.308 12 O -0.600 6.600 13 N -0.758 5.758 14 C 0.152 3.848 15 C -0.056 4.056 16 H 0.090 0.910 17 C -0.156 4.156 18 C 0.062 3.938 19 O -0.318 6.318 20 C 0.135 3.865 21 C -0.153 4.153 22 C -0.088 4.088 23 C -0.152 4.152 24 C -0.080 4.080 25 C -0.151 4.151 26 H 0.266 0.734 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.386 0.614 30 H 0.390 0.610 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.730 -22.788 -0.382 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.479 6.479 13 N -0.416 5.416 14 C 0.027 3.973 15 C -0.074 4.074 16 H 0.108 0.892 17 C -0.193 4.193 18 C -0.013 4.013 19 O -0.232 6.232 20 C 0.090 3.910 21 C -0.171 4.171 22 C -0.106 4.106 23 C -0.170 4.170 24 C -0.098 4.098 25 C -0.152 4.152 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.218 0.782 30 H 0.223 0.777 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.460 -22.920 -0.546 24.802 hybrid contribution 1.285 1.324 0.128 1.849 sum 10.745 -21.597 -0.418 24.126 Atomic orbital electron populations 1.69982 1.06091 1.27267 1.48943 1.24950 0.94916 0.99407 0.94792 0.86412 0.79580 0.82679 0.78189 1.20481 1.21011 1.19802 1.21222 0.93240 0.90450 1.53099 0.91977 1.18976 0.87784 0.81063 0.97606 1.45712 1.10741 1.04422 1.77279 1.16139 0.85190 0.81045 0.78422 1.90879 1.14252 1.84232 1.58541 1.45138 1.08734 1.05059 1.82632 1.21108 0.94513 0.79218 1.02461 1.20247 0.97742 0.91137 0.98312 0.89229 1.22327 0.99840 0.99364 0.97810 1.22998 0.92726 0.82244 1.03321 1.85988 1.49058 1.41726 1.46383 1.18684 0.90348 0.93016 0.88948 1.20577 1.01111 0.93976 1.01466 1.20940 0.95711 0.99453 0.94480 1.21056 1.01852 0.93089 1.01031 1.21073 0.95035 0.96917 0.96814 1.19611 1.01523 0.94329 0.99757 0.92456 0.95765 0.95751 0.78222 0.77699 0.91682 0.91337 0.89865 0.89372 0.91741 0.87355 0.85363 0.85504 0.85763 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.27 7.18 5.43 -5.20 -0.03 7.15 16 10 N -0.73 -15.57 5.55 -66.42 -0.37 -15.94 16 11 C 0.69 14.28 8.57 -86.92 -0.74 13.54 16 12 O -0.60 -15.18 16.34 5.29 0.09 -15.10 16 13 N -0.76 -10.96 5.30 -65.22 -0.35 -11.31 16 14 C 0.15 1.98 4.71 -4.04 -0.02 1.96 16 15 C -0.06 -0.55 2.41 -91.70 -0.22 -0.77 16 16 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 17 C -0.16 -1.36 5.20 -26.48 -0.14 -1.50 16 18 C 0.06 0.49 7.03 37.38 0.26 0.75 16 19 O -0.32 -3.39 10.27 -19.24 -0.20 -3.59 16 20 C 0.14 1.49 6.47 -39.19 -0.25 1.23 16 21 C -0.15 -1.50 9.94 -39.34 -0.39 -1.89 16 22 C -0.09 -0.76 10.04 -39.66 -0.40 -1.16 16 23 C -0.15 -1.40 10.04 -39.61 -0.40 -1.80 16 24 C -0.08 -0.83 9.09 -39.53 -0.36 -1.19 16 25 C -0.15 -1.62 5.43 -104.44 -0.57 -2.19 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 27 H 0.02 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.39 6.95 8.34 -40.82 -0.34 6.61 16 30 H 0.39 4.34 7.88 -40.82 -0.32 4.02 16 31 H 0.07 0.88 6.34 -51.93 -0.33 0.55 16 32 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 33 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.09 0.65 7.58 -51.93 -0.39 0.25 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.13 1.26 6.40 -52.48 -0.34 0.93 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -34.13 334.23 -9.22 -43.35 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.48 Total: 6.51 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -3.67 Total: 0.71 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.02 Total: -52.77 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.11 Total: -18.69 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.13 -9.22 -43.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426424727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.572 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds