Wall clock time and date at job start Tue Mar 31 2020 06:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99977 * 2 1 4 4 H 1.48504 * 109.47560 * 270.00625 * 3 2 1 5 5 H 1.48507 * 109.47063 * 30.00584 * 3 2 1 6 6 H 1.48497 * 109.47050 * 150.00362 * 3 2 1 7 7 C 1.37876 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99388 * 180.27012 * 7 2 1 9 9 C 1.50695 * 120.00369 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47346 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99925 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00147 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99961 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00063 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46733 * 174.81386 * 14 13 11 16 16 H 1.09000 * 109.43895 * 56.09401 * 15 14 13 17 17 C 1.53070 * 109.43710 * 296.22033 * 15 14 13 18 18 C 1.53422 * 108.29969 * 191.78351 * 17 15 14 19 19 O 1.42830 * 108.36037 * 64.75056 * 18 17 15 20 20 C 1.35841 * 117.84462 * 310.78374 * 19 18 17 21 21 C 1.39148 * 118.49124 * 197.08192 * 20 19 18 22 22 C 1.37966 * 120.21687 * 180.23391 * 21 20 19 23 23 C 1.38288 * 119.95574 * 0.02562 * 22 21 20 24 24 C 1.38104 * 119.98616 * 359.91575 * 23 22 21 25 25 C 1.38374 * 121.81298 * 17.17556 * 20 19 18 26 26 H 0.97000 * 120.00070 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.47270 * 300.00285 * 9 7 2 28 28 H 1.08997 * 109.47555 * 59.99861 * 9 7 2 29 29 H 0.96997 * 119.99755 * 359.97438 * 10 9 7 30 30 H 0.97005 * 120.00094 * 359.97438 * 13 11 10 31 31 H 1.08992 * 109.47169 * 294.81240 * 14 13 11 32 32 H 1.09005 * 109.46737 * 54.82068 * 14 13 11 33 33 H 1.08996 * 109.70115 * 311.48869 * 17 15 14 34 34 H 1.09004 * 109.69720 * 72.08927 * 17 15 14 35 35 H 1.09002 * 109.68073 * 305.03277 * 18 17 15 36 36 H 1.08998 * 109.71715 * 184.48976 * 18 17 15 37 37 H 1.07998 * 119.89157 * 0.20801 * 21 20 19 38 38 H 1.08001 * 120.02460 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.01051 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.84291 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 0.0039 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5584 -5.1055 0.0009 13 7 2.6296 -5.9077 -0.0005 14 6 2.1413 -7.2890 0.0006 15 6 3.3256 -8.2487 -0.1307 16 1 4.0397 -8.0553 0.6698 17 6 4.0082 -8.0334 -1.4838 18 6 4.9904 -9.1886 -1.7171 19 8 4.2421 -10.4003 -1.8261 20 6 3.3126 -10.6602 -0.8702 21 6 2.8368 -11.9616 -0.7434 22 6 1.8889 -12.2643 0.2123 23 6 1.4088 -11.2720 1.0473 24 6 1.8797 -9.9795 0.9251 25 6 2.8329 -9.6701 -0.0309 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6241 -2.5568 -0.8902 29 1 3.1567 -3.4354 -0.0009 30 1 3.5833 -5.7305 -0.0017 31 1 1.6146 -7.4874 0.9340 32 1 1.4610 -7.4345 -0.8386 33 1 3.2591 -8.0224 -2.2755 34 1 4.5492 -7.0871 -1.4759 35 1 5.6816 -9.2581 -0.8771 36 1 5.5477 -9.0171 -2.6380 37 1 3.2104 -12.7372 -1.3955 38 1 1.5214 -13.2754 0.3077 39 1 0.6665 -11.5079 1.7954 40 1 1.5034 -9.2064 1.5787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426424727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:26 Heat of formation + Delta-G solvation = -78.118478 kcal Electronic energy + Delta-G solvation = -22254.701675 eV Core-core repulsion = 18840.043810 eV Total energy + Delta-G solvation = -3414.657864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.84723 -40.78930 -38.41421 -37.34577 -36.07174 -34.57379 -33.95074 -31.63210 -31.14256 -29.66403 -28.07836 -25.20331 -24.76407 -24.04259 -22.80178 -21.91638 -20.87707 -19.85017 -18.74950 -18.05427 -17.61774 -17.46823 -16.87224 -16.67662 -16.31541 -15.94359 -15.49348 -15.36531 -15.03685 -14.85074 -14.62757 -14.16581 -14.11346 -14.08533 -13.97916 -13.47645 -13.07379 -12.89328 -12.70190 -12.59759 -12.33226 -12.21483 -11.91381 -11.67156 -11.46841 -11.37275 -11.23124 -10.79881 -10.28164 -9.77626 -9.58771 -9.11691 -8.27647 -6.44115 0.34414 0.47545 1.44136 1.47014 1.57896 1.85956 2.24067 2.38068 2.40576 2.79505 3.07458 3.44725 3.53429 3.63456 3.74071 3.85271 4.16861 4.24298 4.25591 4.32826 4.46565 4.52876 4.57478 4.64762 4.80700 4.81900 4.97753 5.05654 5.11014 5.15192 5.27819 5.34942 5.47995 5.50429 5.51706 5.61761 5.68081 5.85853 5.87437 6.26074 6.49439 6.67939 7.25233 7.32148 7.72410 8.84831 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.002749 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.178419 B =10184.338288 C =10814.873147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.722 5.722 11 C 0.691 3.309 12 O -0.651 6.651 13 N -0.728 5.728 14 C 0.154 3.846 15 C -0.044 4.044 16 H 0.109 0.891 17 C -0.155 4.155 18 C 0.060 3.940 19 O -0.332 6.332 20 C 0.120 3.880 21 C -0.164 4.164 22 C -0.086 4.086 23 C -0.159 4.159 24 C -0.097 4.097 25 C -0.165 4.165 26 H 0.269 0.731 27 H -0.015 1.015 28 H -0.016 1.016 29 H 0.406 0.594 30 H 0.412 0.588 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.141 0.859 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.520 -23.118 -0.242 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.591 4.591 8 H 0.103 0.897 9 C 0.162 3.838 10 N -0.375 5.375 11 C 0.390 3.610 12 O -0.533 6.533 13 N -0.386 5.386 14 C 0.030 3.970 15 C -0.062 4.062 16 H 0.127 0.873 17 C -0.192 4.192 18 C -0.015 4.015 19 O -0.247 6.247 20 C 0.075 3.925 21 C -0.182 4.182 22 C -0.103 4.103 23 C -0.177 4.177 24 C -0.115 4.115 25 C -0.167 4.167 26 H 0.077 0.923 27 H 0.003 0.997 28 H 0.002 0.998 29 H 0.241 0.759 30 H 0.249 0.751 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.160 0.840 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.345 -23.302 -0.407 26.373 hybrid contribution 0.373 1.295 0.081 1.350 sum 12.718 -22.007 -0.325 25.420 Atomic orbital electron populations 1.70150 1.08320 1.28562 1.50024 1.26082 0.95778 1.03931 0.93915 0.85133 0.78472 0.76869 0.78575 1.19615 1.21048 1.17823 1.21602 0.94349 0.90396 1.52784 0.89687 1.18405 0.88133 0.83396 0.93902 1.45269 1.10919 1.03712 1.77635 1.16311 0.85081 0.81647 0.77945 1.90847 1.16919 1.84986 1.60597 1.44816 1.09073 1.04273 1.80455 1.21170 0.95863 0.78682 1.01294 1.20159 0.96485 0.89813 0.99768 0.87287 1.22328 0.99714 1.00884 0.96288 1.23218 0.92372 0.80770 1.05101 1.85966 1.49241 1.42938 1.46512 1.18907 0.90898 0.93603 0.89142 1.20883 1.01338 0.94033 1.01960 1.21280 0.94890 1.00629 0.93549 1.21350 1.02027 0.92806 1.01481 1.21228 0.95472 0.97647 0.97117 1.19709 1.02140 0.94648 1.00175 0.92259 0.99721 0.99772 0.75887 0.75129 0.92146 0.93634 0.91861 0.87500 0.90242 0.85298 0.84164 0.82813 0.84032 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.15 29.54 68.60 2.03 44.18 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.55 -30.09 9.28 25.60 0.24 -29.85 16 8 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.29 15.88 5.43 85.63 0.46 16.35 16 10 N -0.72 -30.90 5.55 -482.30 -2.68 -33.58 16 11 C 0.69 28.83 8.57 179.06 1.53 30.36 16 12 O -0.65 -34.27 16.34 -3.99 -0.07 -34.34 16 13 N -0.73 -20.41 5.30 -478.53 -2.54 -22.95 16 14 C 0.15 4.00 4.71 86.38 0.41 4.40 16 15 C -0.04 -0.80 2.41 -11.49 -0.03 -0.83 16 16 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 17 C -0.15 -2.44 5.20 30.76 0.16 -2.28 16 18 C 0.06 0.81 7.03 72.12 0.51 1.32 16 19 O -0.33 -6.68 10.27 -91.76 -0.94 -7.62 16 20 C 0.12 2.52 6.47 22.52 0.15 2.67 16 21 C -0.16 -3.01 9.94 22.42 0.22 -2.78 16 22 C -0.09 -1.35 10.04 22.22 0.22 -1.13 16 23 C -0.16 -2.76 10.04 22.25 0.22 -2.53 16 24 C -0.10 -1.96 9.09 22.30 0.20 -1.76 16 25 C -0.17 -3.44 5.43 -19.75 -0.11 -3.55 16 26 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 27 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 28 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 29 H 0.41 13.98 8.34 -92.71 -0.77 13.21 16 30 H 0.41 8.15 7.88 -92.70 -0.73 7.42 16 31 H 0.06 1.65 6.34 -2.39 -0.02 1.64 16 32 H 0.05 1.41 8.12 -2.38 -0.02 1.39 16 33 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 34 H 0.11 1.26 7.58 -2.39 -0.02 1.24 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 40 H 0.13 2.52 6.40 -2.91 -0.02 2.51 16 Total: -1.00 -76.88 334.23 0.31 -76.57 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -0.43 Total: 23.04 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 4.65 Total: 10.97 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -4.93 Total: -112.80 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -1.01 Total: -41.96 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -76.88 0.31 -76.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426424727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.551 kcal (2) G-P(sol) polarization free energy of solvation -76.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds