Wall clock time and date at job start Tue Mar 31 2020 06:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00037 * 2 1 4 4 H 1.48496 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47076 * 300.00035 * 3 2 1 6 6 H 1.48504 * 109.47060 * 59.99854 * 3 2 1 7 7 C 1.37880 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00023 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00052 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47519 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00298 * 180.02562 * 10 9 7 12 12 O 1.21587 * 119.99928 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99933 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99916 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47178 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47020 * 179.97438 * 15 14 13 17 17 C 1.38291 * 120.11946 * 90.00140 * 16 15 14 18 18 C 1.37929 * 120.35446 * 180.17130 * 17 16 15 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 H 0.97001 * 120.00095 * 0.02562 * 1 2 3 26 26 H 1.09010 * 109.46726 * 59.99974 * 9 7 2 27 27 H 1.08999 * 109.47278 * 300.00830 * 9 7 2 28 28 H 0.97003 * 119.99804 * 0.02562 * 10 9 7 29 29 H 0.96999 * 120.00177 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47043 * 59.99881 * 14 13 11 31 31 H 1.09002 * 109.46825 * 299.99901 * 14 13 11 32 32 H 1.09002 * 109.46814 * 59.99612 * 15 14 13 33 33 H 1.09006 * 109.46949 * 300.00139 * 15 14 13 34 34 H 1.08007 * 119.81963 * 0.19443 * 17 16 15 35 35 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.98294 * 179.61345 * 21 20 19 37 37 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 38 38 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 39 39 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 40 40 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5584 -5.1055 -0.0020 13 7 2.6297 -5.9077 -0.0005 14 6 2.1413 -7.2890 -0.0017 15 6 3.3314 -8.2507 -0.0014 16 6 2.8290 -9.6714 -0.0020 17 6 2.5982 -10.3254 -1.1984 18 6 2.1351 -11.6246 -1.2045 19 6 1.8944 -12.2893 -0.0044 20 6 2.1371 -11.6237 1.1913 21 6 2.5968 -10.3261 1.1945 22 6 1.8024 -12.5895 2.3116 23 6 1.7540 -13.9429 1.5636 24 8 1.4353 -13.5515 0.2174 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 3.1567 -3.4354 -0.0002 29 1 3.5833 -5.7305 -0.0002 30 1 1.5368 -7.4599 -0.8924 31 1 1.5348 -7.4606 0.8876 32 1 3.9363 -8.0798 0.8891 33 1 3.9376 -8.0788 -0.8909 34 1 2.7820 -9.8162 -2.1330 35 1 1.9579 -12.1282 -2.1433 36 1 2.7752 -9.8190 2.1312 37 1 0.8342 -12.3535 2.7532 38 1 2.5846 -12.5917 3.0707 39 1 2.7232 -14.4402 1.6020 40 1 0.9757 -14.5847 1.9766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426442245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:01 Heat of formation + Delta-G solvation = -48.586644 kcal Electronic energy + Delta-G solvation = -21403.387179 eV Core-core repulsion = 17990.009911 eV Total energy + Delta-G solvation = -3413.377268 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.35813 -39.21019 -38.16019 -35.10806 -33.99671 -33.00225 -32.43716 -31.79920 -29.56845 -28.35007 -26.77498 -24.05201 -23.38006 -22.29665 -22.11583 -20.98196 -20.07813 -18.01975 -17.67840 -17.01984 -16.45644 -16.08820 -15.85516 -15.35537 -14.98100 -14.55491 -14.38707 -13.99851 -13.76198 -13.52720 -13.42790 -13.23934 -13.02923 -12.90643 -12.13190 -12.04523 -11.94933 -11.93513 -11.76340 -11.35325 -11.00936 -10.93464 -10.88864 -10.86934 -10.28267 -9.38125 -9.32562 -9.14710 -8.74852 -8.64249 -8.28846 -7.71899 -6.13168 -4.19522 1.01642 1.09839 2.94720 3.25416 3.28745 3.33171 3.36200 3.53058 4.00461 4.06492 4.22121 4.34803 4.55351 4.62545 4.68469 4.84615 4.96890 5.03794 5.10087 5.14298 5.22868 5.24457 5.31555 5.36499 5.40366 5.51944 5.75142 5.93908 6.00867 6.06976 6.12130 6.32754 6.38746 6.88709 6.92090 7.16047 7.55531 7.58896 7.60582 7.94317 8.07675 8.79853 8.98655 9.37219 9.51665 10.97147 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.047794 B = 0.002135 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.712645 B =13113.180783 C =13194.340904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.601 6.601 13 N -0.759 5.759 14 C 0.147 3.853 15 C -0.086 4.086 16 C -0.104 4.104 17 C -0.077 4.077 18 C -0.136 4.136 19 C 0.099 3.901 20 C -0.174 4.174 21 C -0.062 4.062 22 C -0.111 4.111 23 C 0.052 3.948 24 O -0.307 6.307 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.391 0.609 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.436 -26.482 2.382 28.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.480 6.480 13 N -0.417 5.417 14 C 0.022 3.978 15 C -0.124 4.124 16 C -0.104 4.104 17 C -0.095 4.095 18 C -0.154 4.154 19 C 0.054 3.946 20 C -0.175 4.175 21 C -0.080 4.080 22 C -0.148 4.148 23 C -0.023 4.023 24 O -0.221 6.221 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.224 0.776 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.996 -26.680 2.244 27.942 hybrid contribution 1.274 1.068 0.201 1.674 sum 9.269 -25.612 2.444 27.347 Atomic orbital electron populations 1.69992 1.06082 1.27123 1.49083 1.24960 0.94924 0.99425 0.94836 0.86354 0.79784 0.82993 0.77707 1.19680 1.20835 1.20835 1.21272 0.93298 0.90444 1.52895 0.91894 1.18978 0.87816 0.81108 0.97599 1.45710 1.10743 1.04448 1.77340 1.16155 0.85214 0.81066 0.78410 1.90876 1.14297 1.84261 1.58580 1.45160 1.08784 1.05184 1.82577 1.21022 0.95159 0.79252 1.02393 1.20715 0.97746 0.90248 1.03649 1.19550 1.02396 0.95765 0.92737 1.20824 0.97371 0.93167 0.98155 1.20243 1.04277 0.95299 0.95607 1.19607 0.95325 0.85009 0.94641 1.20728 1.06160 0.96173 0.94455 1.20193 0.97380 0.92289 0.98179 1.21799 1.03520 0.92365 0.97103 1.23819 1.02128 0.96786 0.79602 1.86816 1.74302 1.28476 1.32504 0.92536 0.95753 0.95781 0.78192 0.77610 0.91853 0.91942 0.90326 0.90181 0.84859 0.85390 0.85592 0.89034 0.89050 0.90608 0.87640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.25 5.43 -5.20 -0.03 7.22 16 10 N -0.73 -15.89 5.55 -66.42 -0.37 -16.25 16 11 C 0.69 14.60 8.57 -86.92 -0.74 13.86 16 12 O -0.60 -15.51 16.34 5.29 0.09 -15.43 16 13 N -0.76 -11.31 5.56 -65.22 -0.36 -11.67 16 14 C 0.15 1.92 5.66 -4.04 -0.02 1.89 16 15 C -0.09 -0.77 5.47 -27.89 -0.15 -0.92 16 16 C -0.10 -1.00 5.14 -104.56 -0.54 -1.54 16 17 C -0.08 -0.73 9.68 -39.68 -0.38 -1.11 16 18 C -0.14 -1.35 10.06 -39.30 -0.40 -1.74 16 19 C 0.10 1.06 7.04 -38.92 -0.27 0.79 16 20 C -0.17 -1.70 6.27 -104.09 -0.65 -2.35 16 21 C -0.06 -0.60 9.69 -39.75 -0.39 -0.98 16 22 C -0.11 -0.76 7.11 -26.51 -0.19 -0.95 16 23 C 0.05 0.34 8.01 38.06 0.30 0.64 16 24 O -0.31 -3.18 11.10 -20.14 -0.22 -3.41 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.02 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.39 7.10 8.34 -40.82 -0.34 6.76 16 29 H 0.39 4.47 8.49 -40.82 -0.35 4.13 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -35.20 343.78 -9.56 -44.76 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.71 Total: 5.24 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -3.88 Total: 1.26 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.01 Total: -53.59 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.14 Total: -18.83 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.20 -9.56 -44.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426442245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.823 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds