Wall clock time and date at job start Tue Mar 31 2020 06:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00037 * 2 1 4 4 H 1.48496 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47076 * 300.00035 * 3 2 1 6 6 H 1.48504 * 109.47060 * 59.99854 * 3 2 1 7 7 C 1.37880 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00023 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00052 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47519 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00298 * 180.02562 * 10 9 7 12 12 O 1.21587 * 119.99928 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99933 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99916 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47178 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47020 * 179.97438 * 15 14 13 17 17 C 1.38291 * 120.11946 * 90.00140 * 16 15 14 18 18 C 1.37929 * 120.35446 * 180.17130 * 17 16 15 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 H 0.97001 * 120.00095 * 0.02562 * 1 2 3 26 26 H 1.09010 * 109.46726 * 59.99974 * 9 7 2 27 27 H 1.08999 * 109.47278 * 300.00830 * 9 7 2 28 28 H 0.97003 * 119.99804 * 0.02562 * 10 9 7 29 29 H 0.96999 * 120.00177 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47043 * 59.99881 * 14 13 11 31 31 H 1.09002 * 109.46825 * 299.99901 * 14 13 11 32 32 H 1.09002 * 109.46814 * 59.99612 * 15 14 13 33 33 H 1.09006 * 109.46949 * 300.00139 * 15 14 13 34 34 H 1.08007 * 119.81963 * 0.19443 * 17 16 15 35 35 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.98294 * 179.61345 * 21 20 19 37 37 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 38 38 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 39 39 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 40 40 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5584 -5.1055 -0.0020 13 7 2.6297 -5.9077 -0.0005 14 6 2.1413 -7.2890 -0.0017 15 6 3.3314 -8.2507 -0.0014 16 6 2.8290 -9.6714 -0.0020 17 6 2.5982 -10.3254 -1.1984 18 6 2.1351 -11.6246 -1.2045 19 6 1.8944 -12.2893 -0.0044 20 6 2.1371 -11.6237 1.1913 21 6 2.5968 -10.3261 1.1945 22 6 1.8024 -12.5895 2.3116 23 6 1.7540 -13.9429 1.5636 24 8 1.4353 -13.5515 0.2174 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 3.1567 -3.4354 -0.0002 29 1 3.5833 -5.7305 -0.0002 30 1 1.5368 -7.4599 -0.8924 31 1 1.5348 -7.4606 0.8876 32 1 3.9363 -8.0798 0.8891 33 1 3.9376 -8.0788 -0.8909 34 1 2.7820 -9.8162 -2.1330 35 1 1.9579 -12.1282 -2.1433 36 1 2.7752 -9.8190 2.1312 37 1 0.8342 -12.3535 2.7532 38 1 2.5846 -12.5917 3.0707 39 1 2.7232 -14.4402 1.6020 40 1 0.9757 -14.5847 1.9766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426442245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:00 Heat of formation + Delta-G solvation = -73.746461 kcal Electronic energy + Delta-G solvation = -21404.478190 eV Core-core repulsion = 17990.009911 eV Total energy + Delta-G solvation = -3414.468280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.02079 -40.85240 -38.95212 -36.49601 -35.87929 -34.37019 -33.63820 -32.94099 -30.20924 -29.69689 -28.39051 -25.18821 -24.36845 -23.78565 -22.84735 -21.98554 -21.57759 -19.74522 -18.33744 -18.02169 -17.70048 -17.39434 -17.05071 -16.67258 -16.50755 -15.93589 -15.35318 -15.17450 -15.04531 -14.83729 -14.32250 -14.12439 -14.03441 -13.96663 -13.82294 -13.61829 -12.89627 -12.82825 -12.74839 -12.68778 -12.50087 -12.29503 -12.19943 -11.68895 -11.57774 -11.42938 -11.23899 -10.80407 -10.25712 -9.84869 -9.55746 -9.01327 -8.26984 -6.43355 0.28996 0.36889 1.44828 1.46497 1.59748 1.92391 2.27008 2.33605 2.41001 2.70235 3.08004 3.46292 3.56078 3.69098 3.93536 4.01921 4.10858 4.16026 4.16608 4.35815 4.44022 4.55387 4.64359 4.68504 4.85538 4.88389 4.92151 5.03473 5.16132 5.17165 5.28690 5.29084 5.41039 5.50993 5.56855 5.63716 5.67575 5.70596 5.87019 6.21897 6.31309 6.69082 7.26185 7.35995 7.75677 8.85655 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.047794 B = 0.002135 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.712645 B =13113.180783 C =13194.340904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.284 3.716 10 N -0.723 5.723 11 C 0.689 3.311 12 O -0.653 6.653 13 N -0.731 5.731 14 C 0.146 3.854 15 C -0.069 4.069 16 C -0.113 4.113 17 C -0.082 4.082 18 C -0.150 4.150 19 C 0.079 3.921 20 C -0.187 4.187 21 C -0.072 4.072 22 C -0.109 4.109 23 C 0.046 3.954 24 O -0.329 6.329 25 H 0.268 0.732 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.406 0.594 29 H 0.413 0.587 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.231 -26.582 2.844 29.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.103 0.897 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.388 3.612 12 O -0.536 6.536 13 N -0.388 5.388 14 C 0.022 3.978 15 C -0.107 4.107 16 C -0.114 4.114 17 C -0.100 4.100 18 C -0.169 4.169 19 C 0.034 3.966 20 C -0.188 4.188 21 C -0.090 4.090 22 C -0.146 4.146 23 C -0.028 4.028 24 O -0.244 6.244 25 H 0.077 0.923 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.241 0.759 29 H 0.250 0.750 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.885 -26.838 2.710 29.088 hybrid contribution 0.359 0.959 0.064 1.026 sum 11.244 -25.879 2.775 28.352 Atomic orbital electron populations 1.70157 1.08310 1.28484 1.50081 1.26102 0.95813 1.03979 0.93950 0.85068 0.79081 0.77160 0.77609 1.17520 1.20531 1.20502 1.21644 0.94374 0.90391 1.52660 0.89655 1.18410 0.88169 0.83464 0.93885 1.45280 1.10920 1.03777 1.77697 1.16361 0.85136 0.81708 0.77956 1.90843 1.17011 1.85030 1.60693 1.44886 1.09145 1.04495 1.80316 1.21150 0.96956 0.78692 1.01016 1.20603 0.95989 0.88451 1.05619 1.19675 1.02781 0.96033 0.92931 1.21065 0.96963 0.93072 0.98910 1.20495 1.04561 0.95787 0.96045 1.19915 0.95837 0.85515 0.95366 1.21105 1.05764 0.96595 0.95300 1.20446 0.97227 0.92466 0.98814 1.21887 1.04283 0.91663 0.96774 1.24112 1.03719 0.97007 0.77975 1.86778 1.74606 1.28426 1.34566 0.92273 0.99762 0.99771 0.75865 0.74974 0.93319 0.93458 0.88399 0.88179 0.83292 0.84584 0.84289 0.88778 0.87073 0.89263 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.99 42.42 29.54 68.60 2.03 44.44 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.55 -30.30 9.28 25.60 0.24 -30.06 16 8 H 0.09 4.20 7.60 -2.91 -0.02 4.17 16 9 C 0.28 15.99 5.43 85.64 0.46 16.45 16 10 N -0.72 -31.42 5.55 -482.31 -2.68 -34.10 16 11 C 0.69 29.17 8.57 179.06 1.53 30.70 16 12 O -0.65 -34.85 16.34 -3.99 -0.07 -34.91 16 13 N -0.73 -20.62 5.56 -478.52 -2.66 -23.28 16 14 C 0.15 3.66 5.66 86.38 0.49 4.15 16 15 C -0.07 -1.07 5.47 29.85 0.16 -0.90 16 16 C -0.11 -2.02 5.14 -19.83 -0.10 -2.12 16 17 C -0.08 -1.47 9.68 22.21 0.21 -1.25 16 18 C -0.15 -2.95 10.06 22.45 0.23 -2.73 16 19 C 0.08 1.67 7.04 22.70 0.16 1.83 16 20 C -0.19 -3.49 6.27 -19.52 -0.12 -3.61 16 21 C -0.07 -1.29 9.69 22.16 0.21 -1.07 16 22 C -0.11 -1.34 7.11 30.74 0.22 -1.12 16 23 C 0.05 0.54 8.01 72.57 0.58 1.12 16 24 O -0.33 -6.72 11.10 -94.99 -1.05 -7.77 16 25 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 26 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 27 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 28 H 0.41 14.24 8.34 -92.71 -0.77 13.47 16 29 H 0.41 8.19 8.49 -92.71 -0.79 7.40 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.19 8.09 -2.39 -0.02 1.17 16 33 H 0.10 1.20 8.09 -2.38 -0.02 1.18 16 34 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -79.39 343.78 0.10 -79.29 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.50 Total: 20.92 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 4.74 Total: 11.89 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -5.05 Total: -113.87 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.12 Total: -42.68 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -79.39 0.10 -79.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426442245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.548 kcal (2) G-P(sol) polarization free energy of solvation -79.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds