Wall clock time and date at job start Tue Mar 31 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48500 * 109.46894 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47146 * 299.99666 * 3 2 1 6 6 H 1.48497 * 109.46932 * 59.99877 * 3 2 1 7 7 C 1.37881 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00154 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47532 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47290 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99818 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00203 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00003 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99986 * 180.02562 * 14 12 11 16 16 H 1.08992 * 110.73590 * 31.58334 * 15 14 12 17 17 C 1.54353 * 110.82648 * 267.95422 * 15 14 12 18 18 C 1.51381 * 105.17212 * 268.11785 * 17 15 14 19 19 C 1.38538 * 130.36456 * 162.83397 * 18 17 15 20 20 C 1.38125 * 120.33764 * 179.97438 * 19 18 17 21 21 C 1.38158 * 119.99657 * 359.97438 * 20 19 18 22 22 C 1.38600 * 119.87283 * 0.02562 * 21 20 19 23 23 O 1.35899 * 119.95466 * 180.02562 * 22 21 20 24 24 C 1.38368 * 109.79215 * 342.83347 * 18 17 15 25 25 C 1.51362 * 109.65520 * 359.96557 * 24 18 17 26 26 H 0.97002 * 119.99913 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47080 * 59.99921 * 9 7 2 28 28 H 1.09005 * 109.47307 * 300.00856 * 9 7 2 29 29 H 1.08996 * 109.46779 * 59.99658 * 10 9 7 30 30 H 1.09005 * 109.46856 * 300.00504 * 10 9 7 31 31 H 0.96998 * 119.99880 * 359.97438 * 11 10 9 32 32 H 0.97004 * 120.00121 * 359.97438 * 14 12 11 33 33 H 1.09001 * 110.29832 * 27.03418 * 17 15 14 34 34 H 1.08997 * 110.30839 * 149.18900 * 17 15 14 35 35 H 1.08003 * 119.82895 * 359.94821 * 19 18 17 36 36 H 1.07999 * 120.00413 * 179.97438 * 20 19 18 37 37 H 1.08007 * 120.06521 * 179.97438 * 21 20 19 38 38 H 0.96698 * 114.00002 * 89.99943 * 23 22 21 39 39 H 1.09002 * 110.30672 * 258.25415 * 25 24 18 40 40 H 1.08997 * 110.30205 * 136.19714 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0027 11 7 1.5126 -4.9308 0.0033 12 6 2.1865 -6.0980 0.0047 13 8 3.4024 -6.0980 0.0051 14 7 1.5126 -7.2652 0.0057 15 6 2.2451 -8.5339 0.0079 16 1 3.1896 -8.4333 0.5423 17 6 2.4759 -9.0368 -1.4331 18 6 1.2942 -9.9339 -1.7337 19 6 0.8059 -10.3992 -2.9438 20 6 -0.3038 -11.2209 -2.9787 21 6 -0.9323 -11.5832 -1.8030 22 6 -0.4474 -11.1201 -0.5899 23 8 -1.0641 -11.4759 0.5677 24 6 0.6670 -10.2936 -0.5540 25 6 1.3867 -9.6621 0.6183 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6245 -2.5563 0.8919 29 1 2.8718 -3.6036 0.8926 30 1 2.8719 -3.6052 -0.8873 31 1 0.5426 -4.9307 0.0033 32 1 0.5425 -7.2652 0.0058 33 1 2.4993 -8.1969 -2.1275 34 1 3.4053 -9.6031 -1.4918 35 1 1.2952 -10.1177 -3.8645 36 1 -0.6802 -11.5802 -3.9251 37 1 -1.8004 -12.2253 -1.8290 38 1 -0.7188 -12.2876 0.9639 39 1 2.0230 -10.3968 1.1118 40 1 0.6675 -9.2495 1.3259 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428977521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:32 Heat of formation + Delta-G solvation = -83.992262 kcal Electronic energy + Delta-G solvation = -21995.694721 eV Core-core repulsion = 18580.782150 eV Total energy + Delta-G solvation = -3414.912571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68564 -40.67253 -38.39557 -36.98534 -36.36162 -34.84808 -33.93933 -31.39502 -31.28250 -29.17958 -28.18212 -26.63566 -23.64143 -22.93665 -22.30197 -22.04604 -21.49123 -19.51129 -18.87883 -18.42688 -17.59284 -17.07901 -16.66287 -16.49599 -16.40450 -16.08755 -15.68017 -15.19381 -15.11071 -14.65280 -14.47907 -14.23678 -14.05852 -13.79954 -13.20032 -13.00538 -12.97133 -12.77280 -12.55688 -12.49869 -12.29754 -12.23130 -12.09203 -11.66536 -11.48699 -11.43657 -11.18913 -10.60864 -10.35432 -9.76991 -9.54159 -9.47752 -8.23738 -6.34033 0.30900 0.34272 1.41654 1.42322 1.55675 1.75726 2.15726 2.41798 2.66145 3.11149 3.32070 3.34719 3.38590 3.55148 3.98286 4.06054 4.21650 4.33563 4.45432 4.50843 4.53159 4.58224 4.70401 4.82143 4.85231 4.86742 4.89313 5.06535 5.14120 5.32048 5.42674 5.48927 5.51882 5.59152 5.59760 5.61009 5.79479 5.91718 6.03596 6.17606 6.79592 6.88969 7.10854 7.35405 7.59854 8.88493 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.002608 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.672322 B =10731.933639 C =10904.946903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.161 3.839 11 N -0.735 5.735 12 C 0.701 3.299 13 O -0.635 6.635 14 N -0.726 5.726 15 C 0.161 3.839 16 H 0.098 0.902 17 C -0.093 4.093 18 C -0.085 4.085 19 C -0.129 4.129 20 C -0.102 4.102 21 C -0.156 4.156 22 C 0.112 3.888 23 O -0.509 6.509 24 C -0.137 4.137 25 C -0.072 4.072 26 H 0.266 0.734 27 H 0.007 0.993 28 H 0.008 0.992 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.405 0.595 32 H 0.406 0.594 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.408 0.592 39 H 0.115 0.885 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.677 -27.769 -2.488 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.037 3.963 11 N -0.390 5.390 12 C 0.401 3.599 13 O -0.517 6.517 14 N -0.381 5.381 15 C 0.055 3.945 16 H 0.116 0.884 17 C -0.131 4.131 18 C -0.086 4.086 19 C -0.147 4.147 20 C -0.120 4.120 21 C -0.174 4.174 22 C 0.068 3.932 23 O -0.322 6.322 24 C -0.137 4.137 25 C -0.110 4.110 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.240 0.760 32 H 0.241 0.759 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.266 0.734 39 H 0.133 0.867 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.040 -27.152 -2.565 27.293 hybrid contribution -0.442 0.661 -0.008 0.795 sum -1.482 -26.491 -2.573 26.657 Atomic orbital electron populations 1.70069 1.07575 1.27925 1.51136 1.25887 0.95802 1.03149 0.94432 0.85379 0.78989 0.78689 0.77883 1.18896 1.20222 1.20214 1.21497 0.93629 0.91859 1.51353 0.92218 1.19133 0.94253 0.91773 0.96258 1.21064 0.94556 0.81026 0.99647 1.45257 1.10349 1.04577 1.78767 1.16124 0.85182 0.81131 0.77507 1.90854 1.13410 1.87250 1.60183 1.45033 1.09936 1.03551 1.79597 1.21480 0.95933 0.81375 0.95701 0.88422 1.21533 0.96821 0.97825 0.96952 1.20663 0.96751 0.97746 0.93403 1.20924 0.97619 0.98867 0.97310 1.21218 0.94871 0.97008 0.98908 1.21562 1.01819 1.02306 0.91726 1.18129 0.91339 0.97289 0.86463 1.84777 1.61826 1.48750 1.36860 1.20953 0.95697 1.00570 0.96497 1.21211 0.98185 0.96123 0.95459 0.92561 0.97448 0.97389 0.93703 0.93812 0.75981 0.75864 0.91722 0.87800 0.85030 0.83174 0.83745 0.73369 0.86732 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 2 C 0.01 0.33 5.46 84.66 0.46 0.80 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.20 5.09 29.85 0.15 1.35 16 10 C 0.16 7.15 5.61 86.38 0.48 7.63 16 11 N -0.74 -26.63 5.56 -478.55 -2.66 -29.30 16 12 C 0.70 24.61 8.57 179.05 1.53 26.14 16 13 O -0.64 -27.19 15.99 -3.99 -0.06 -27.25 16 14 N -0.73 -18.55 5.11 -453.44 -2.32 -20.87 16 15 C 0.16 3.46 3.45 45.91 0.16 3.62 16 16 H 0.10 2.33 7.54 -2.39 -0.02 2.31 16 17 C -0.09 -1.90 6.49 30.52 0.20 -1.70 16 18 C -0.09 -1.62 6.14 -19.55 -0.12 -1.74 16 19 C -0.13 -2.20 10.03 22.31 0.22 -1.97 16 20 C -0.10 -1.47 10.04 22.22 0.22 -1.25 16 21 C -0.16 -2.34 9.98 22.34 0.22 -2.12 16 22 C 0.11 1.90 6.70 22.49 0.15 2.05 16 23 O -0.51 -7.49 13.45 -92.42 -1.24 -8.73 16 24 C -0.14 -2.45 6.12 -19.49 -0.12 -2.57 16 25 C -0.07 -1.17 6.31 30.52 0.19 -0.98 16 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.41 12.73 8.49 -92.71 -0.79 11.94 16 32 H 0.41 8.80 8.67 -92.71 -0.80 8.00 16 33 H 0.06 1.59 8.09 -2.39 -0.02 1.57 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.41 2.05 9.06 -74.06 -0.67 1.38 16 39 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 Total: -1.00 -72.31 342.37 -1.16 -73.47 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -1.18 Total: 22.62 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 4.00 Total: -1.35 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -4.69 Total: -104.78 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -1.31 Total: -35.99 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.31 -1.16 -73.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428977521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.525 kcal (2) G-P(sol) polarization free energy of solvation -72.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds