Wall clock time and date at job start Tue Mar 31 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00287 * 2 1 4 4 H 1.48505 * 109.46773 * 240.00090 * 3 2 1 5 5 H 1.48493 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47077 * 120.00255 * 3 2 1 7 7 C 1.37887 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00015 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99711 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46956 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46823 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46597 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99515 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00459 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99868 * 179.97438 * 13 12 11 16 16 C 1.39938 * 120.00182 * 184.44115 * 15 13 12 17 17 C 1.39030 * 120.08239 * 325.39208 * 16 15 13 18 18 C 1.38131 * 119.68096 * 179.97438 * 17 16 15 19 19 C 1.38010 * 120.43139 * 0.18361 * 18 17 16 20 20 C 1.39315 * 120.38834 * 0.03457 * 19 18 17 21 21 C 1.38311 * 120.08125 * 145.36266 * 16 15 13 22 22 C 1.51940 * 132.11660 * 358.87945 * 21 16 15 23 23 C 1.54704 * 101.78379 * 195.82671 * 22 21 16 24 24 O 1.36145 * 129.85605 * 179.52739 * 20 19 18 25 25 H 0.97006 * 119.99753 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47176 * 59.99772 * 9 7 2 27 27 H 1.09000 * 109.47355 * 300.00095 * 9 7 2 28 28 H 1.08999 * 109.46895 * 60.00212 * 10 9 7 29 29 H 1.09000 * 109.47023 * 300.00123 * 10 9 7 30 30 H 1.08994 * 109.47405 * 59.99913 * 11 10 9 31 31 H 1.08998 * 109.46860 * 299.99884 * 11 10 9 32 32 H 0.96999 * 120.00506 * 359.97438 * 12 11 10 33 33 H 0.97002 * 119.99651 * 4.45041 * 15 13 12 34 34 H 1.07991 * 120.15945 * 359.93569 * 17 16 15 35 35 H 1.07999 * 119.77877 * 180.21275 * 18 17 16 36 36 H 1.07998 * 119.80683 * 180.02562 * 19 18 17 37 37 H 1.08996 * 110.89909 * 77.75282 * 22 21 16 38 38 H 1.09000 * 111.10257 * 313.97914 * 22 21 16 39 39 H 1.08998 * 110.74884 * 216.53382 * 23 22 21 40 40 H 1.08994 * 110.75048 * 93.35593 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 7 2.4320 -6.1007 -0.0006 13 6 1.9827 -7.3714 -0.0005 14 8 0.7873 -7.5935 -0.0013 15 7 2.8585 -8.3958 -0.0004 16 6 2.3947 -9.7128 -0.0941 17 6 1.1912 -10.0720 0.5021 18 6 0.7410 -11.3742 0.4039 19 6 1.4797 -12.3196 -0.2781 20 6 2.6894 -11.9722 -0.8756 21 6 3.1323 -10.6603 -0.7807 22 6 4.4445 -10.5748 -1.5418 23 6 4.4205 -11.8867 -2.3613 24 8 3.5674 -12.7395 -1.5783 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8905 30 1 0.8537 -5.0446 -0.8913 31 1 0.8531 -5.0451 0.8886 32 1 3.3857 -5.9235 -0.0002 33 1 3.8102 -8.2202 0.0647 34 1 0.6114 -9.3365 1.0399 35 1 -0.1953 -11.6541 0.8636 36 1 1.1180 -13.3348 -0.3489 37 1 5.2915 -10.5592 -0.8559 38 1 4.4611 -9.7053 -2.1989 39 1 5.4215 -12.3106 -2.4410 40 1 3.9948 -11.7166 -3.3501 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434142292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:07 Heat of formation + Delta-G solvation = -44.046688 kcal Electronic energy + Delta-G solvation = -21810.699462 eV Core-core repulsion = 18397.519061 eV Total energy + Delta-G solvation = -3413.180401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.46003 -40.17315 -37.65773 -35.57301 -34.76652 -33.37404 -32.44674 -31.23435 -29.73497 -28.82615 -26.61547 -23.92459 -23.39641 -22.57399 -21.72726 -20.90260 -20.35368 -18.49843 -18.03982 -16.95546 -16.49860 -16.40641 -15.78039 -15.66163 -15.55308 -14.77748 -14.44939 -14.25338 -14.14413 -13.64573 -13.38755 -13.30676 -12.84310 -12.31220 -12.14901 -12.02630 -11.86874 -11.85109 -11.46815 -11.20732 -10.91361 -10.77699 -10.65088 -10.41428 -10.04585 -9.90588 -9.48661 -9.17474 -8.93769 -8.50190 -8.39681 -8.10866 -6.04369 -4.07772 1.06795 1.22868 2.55227 2.98762 3.11542 3.29955 3.35038 3.36640 3.61669 4.10894 4.15785 4.29118 4.42184 4.63817 4.78223 4.98117 5.06984 5.16994 5.31350 5.34659 5.35999 5.43794 5.52921 5.60666 5.73567 6.00407 6.07749 6.11189 6.24104 6.33063 6.44387 6.55238 6.56327 6.70648 6.90876 6.96256 7.01261 7.60018 7.72479 7.90625 7.93943 8.34440 8.51411 8.98605 9.56465 11.06854 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036758 B = 0.002385 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.553474 B =11738.285650 C =12330.256730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.133 3.867 12 N -0.735 5.735 13 C 0.699 3.301 14 O -0.572 6.572 15 N -0.690 5.690 16 C 0.223 3.777 17 C -0.147 4.147 18 C -0.067 4.067 19 C -0.158 4.158 20 C 0.121 3.879 21 C -0.213 4.213 22 C -0.105 4.105 23 C 0.053 3.947 24 O -0.306 6.306 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.396 0.604 33 H 0.405 0.595 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.434 -24.497 -1.693 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.011 3.989 12 N -0.388 5.388 13 C 0.400 3.600 14 O -0.448 6.448 15 N -0.337 5.337 16 C 0.127 3.873 17 C -0.168 4.168 18 C -0.086 4.086 19 C -0.177 4.177 20 C 0.075 3.925 21 C -0.216 4.216 22 C -0.142 4.142 23 C -0.022 4.022 24 O -0.220 6.220 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.229 0.771 33 H 0.240 0.760 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.190 -24.681 -1.725 26.061 hybrid contribution 1.505 1.353 -0.079 2.025 sum 9.695 -23.328 -1.804 25.327 Atomic orbital electron populations 1.69953 1.06064 1.26853 1.50347 1.25031 0.94862 0.99307 0.95235 0.86637 0.79563 0.83081 0.78581 1.20245 1.21248 1.20243 1.21155 0.92936 0.90935 1.51216 0.92708 1.19023 0.93823 0.90745 0.97733 1.21903 0.99839 0.93210 1.00903 1.21599 0.91235 0.83933 1.02182 1.45428 1.10781 1.04175 1.78464 1.15999 0.85201 0.80749 0.78096 1.90929 1.13783 1.83554 1.56572 1.42670 1.09972 1.03708 1.77368 1.16686 0.94127 0.81801 0.94714 1.21342 0.96724 0.96882 1.01832 1.20798 0.98988 0.91962 0.96830 1.20222 0.92583 1.01006 1.03924 1.19232 0.90588 0.88775 0.93887 1.20452 0.99721 0.94991 1.06483 1.21749 0.95004 0.99084 0.98334 1.23788 0.94948 0.88930 0.94493 1.86834 1.44995 1.32678 1.57452 0.92824 0.96214 0.96211 0.92678 0.92714 0.91665 0.91637 0.77093 0.75979 0.83351 0.84740 0.85515 0.89399 0.89227 0.87654 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.13 2.26 5.67 -4.04 -0.02 2.24 16 12 N -0.73 -9.99 5.56 -65.22 -0.36 -10.35 16 13 C 0.70 10.24 8.41 -86.91 -0.73 9.51 16 14 O -0.57 -10.56 13.76 5.29 0.07 -10.49 16 15 N -0.69 -7.74 5.32 -14.32 -0.08 -7.82 16 16 C 0.22 2.72 6.29 -83.84 -0.53 2.19 16 17 C -0.15 -1.89 8.71 -39.33 -0.34 -2.23 16 18 C -0.07 -0.71 10.01 -39.70 -0.40 -1.11 16 19 C -0.16 -1.66 10.06 -39.26 -0.39 -2.05 16 20 C 0.12 1.36 7.03 -38.98 -0.27 1.08 16 21 C -0.21 -2.29 6.20 -103.78 -0.64 -2.93 16 22 C -0.10 -0.77 7.12 -26.37 -0.19 -0.96 16 23 C 0.05 0.38 8.00 38.05 0.30 0.68 16 24 O -0.31 -3.21 11.11 -20.20 -0.22 -3.43 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.40 4.13 8.49 -40.82 -0.35 3.79 16 33 H 0.41 3.18 8.84 -40.82 -0.36 2.82 16 34 H 0.15 2.15 6.21 -52.49 -0.33 1.82 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -33.44 339.33 -9.32 -42.75 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.65 Total: 2.58 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -3.91 Total: -8.75 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.30 Total: -44.01 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.15 Total: -13.92 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.44 -9.32 -42.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434142292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.294 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds