Wall clock time and date at job start Tue Mar 31 2020 06:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00287 * 2 1 4 4 H 1.48505 * 109.46773 * 240.00090 * 3 2 1 5 5 H 1.48493 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47077 * 120.00255 * 3 2 1 7 7 C 1.37887 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00015 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99711 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46956 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46823 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46597 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99515 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00459 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99868 * 179.97438 * 13 12 11 16 16 C 1.39938 * 120.00182 * 184.44115 * 15 13 12 17 17 C 1.39030 * 120.08239 * 325.39208 * 16 15 13 18 18 C 1.38131 * 119.68096 * 179.97438 * 17 16 15 19 19 C 1.38010 * 120.43139 * 0.18361 * 18 17 16 20 20 C 1.39315 * 120.38834 * 0.03457 * 19 18 17 21 21 C 1.38311 * 120.08125 * 145.36266 * 16 15 13 22 22 C 1.51940 * 132.11660 * 358.87945 * 21 16 15 23 23 C 1.54704 * 101.78379 * 195.82671 * 22 21 16 24 24 O 1.36145 * 129.85605 * 179.52739 * 20 19 18 25 25 H 0.97006 * 119.99753 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47176 * 59.99772 * 9 7 2 27 27 H 1.09000 * 109.47355 * 300.00095 * 9 7 2 28 28 H 1.08999 * 109.46895 * 60.00212 * 10 9 7 29 29 H 1.09000 * 109.47023 * 300.00123 * 10 9 7 30 30 H 1.08994 * 109.47405 * 59.99913 * 11 10 9 31 31 H 1.08998 * 109.46860 * 299.99884 * 11 10 9 32 32 H 0.96999 * 120.00506 * 359.97438 * 12 11 10 33 33 H 0.97002 * 119.99651 * 4.45041 * 15 13 12 34 34 H 1.07991 * 120.15945 * 359.93569 * 17 16 15 35 35 H 1.07999 * 119.77877 * 180.21275 * 18 17 16 36 36 H 1.07998 * 119.80683 * 180.02562 * 19 18 17 37 37 H 1.08996 * 110.89909 * 77.75282 * 22 21 16 38 38 H 1.09000 * 111.10257 * 313.97914 * 22 21 16 39 39 H 1.08998 * 110.74884 * 216.53382 * 23 22 21 40 40 H 1.08994 * 110.75048 * 93.35593 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 7 2.4320 -6.1007 -0.0006 13 6 1.9827 -7.3714 -0.0005 14 8 0.7873 -7.5935 -0.0013 15 7 2.8585 -8.3958 -0.0004 16 6 2.3947 -9.7128 -0.0941 17 6 1.1912 -10.0720 0.5021 18 6 0.7410 -11.3742 0.4039 19 6 1.4797 -12.3196 -0.2781 20 6 2.6894 -11.9722 -0.8756 21 6 3.1323 -10.6603 -0.7807 22 6 4.4445 -10.5748 -1.5418 23 6 4.4205 -11.8867 -2.3613 24 8 3.5674 -12.7395 -1.5783 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8905 30 1 0.8537 -5.0446 -0.8913 31 1 0.8531 -5.0451 0.8886 32 1 3.3857 -5.9235 -0.0002 33 1 3.8102 -8.2202 0.0647 34 1 0.6114 -9.3365 1.0399 35 1 -0.1953 -11.6541 0.8636 36 1 1.1180 -13.3348 -0.3489 37 1 5.2915 -10.5592 -0.8559 38 1 4.4611 -9.7053 -2.1989 39 1 5.4215 -12.3106 -2.4410 40 1 3.9948 -11.7166 -3.3501 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434142292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:06 Heat of formation + Delta-G solvation = -66.488715 kcal Electronic energy + Delta-G solvation = -21811.672621 eV Core-core repulsion = 18397.519061 eV Total energy + Delta-G solvation = -3414.153560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.27873 -41.21964 -38.57464 -36.98769 -35.80949 -35.20488 -33.33657 -32.81932 -30.55553 -29.77982 -28.30575 -25.27056 -24.33625 -23.66513 -22.59377 -22.33829 -21.64612 -19.56385 -18.99953 -18.45083 -17.70530 -17.22328 -16.87270 -16.81949 -16.49192 -16.41441 -15.82928 -15.59655 -15.38703 -14.40312 -14.25754 -14.24549 -14.01495 -13.75448 -13.63645 -13.48620 -13.00148 -12.72437 -12.64569 -12.54538 -12.40825 -12.20773 -11.94667 -11.66425 -11.62505 -11.37080 -11.22123 -11.05409 -10.54083 -10.19484 -9.31247 -9.00438 -8.18841 -6.30292 0.22693 0.34938 1.41992 1.45127 1.47921 1.53251 1.97265 2.31617 2.42400 2.76250 3.12213 3.15030 3.48010 3.66928 4.04654 4.13013 4.15744 4.22549 4.23124 4.38360 4.50162 4.53604 4.55859 4.75694 4.85243 4.89712 4.95615 4.95767 5.15618 5.20510 5.21841 5.38587 5.41178 5.51888 5.54237 5.69717 5.71950 5.85054 5.89796 6.20884 6.23067 6.86800 6.92744 7.39109 7.40255 8.93063 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036758 B = 0.002385 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.553474 B =11738.285650 C =12330.256730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.721 5.721 13 C 0.699 3.301 14 O -0.614 6.614 15 N -0.671 5.671 16 C 0.203 3.797 17 C -0.171 4.171 18 C -0.068 4.068 19 C -0.161 4.161 20 C 0.108 3.892 21 C -0.213 4.213 22 C -0.102 4.102 23 C 0.048 3.952 24 O -0.319 6.319 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.415 0.585 33 H 0.423 0.577 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.310 -25.196 -2.229 28.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.376 5.376 13 C 0.399 3.601 14 O -0.494 6.494 15 N -0.319 5.319 16 C 0.107 3.893 17 C -0.192 4.192 18 C -0.086 4.086 19 C -0.180 4.180 20 C 0.062 3.938 21 C -0.217 4.217 22 C -0.139 4.139 23 C -0.026 4.026 24 O -0.233 6.233 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.251 0.749 33 H 0.261 0.739 34 H 0.143 0.857 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.152 0.848 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.148 -25.409 -2.264 27.840 hybrid contribution 0.602 1.459 0.067 1.579 sum 11.750 -23.951 -2.197 26.768 Atomic orbital electron populations 1.70106 1.07955 1.27850 1.51648 1.26026 0.95733 1.03558 0.94820 0.85478 0.78190 0.77964 0.79274 1.18998 1.21283 1.19013 1.21659 0.93771 0.91994 1.50504 0.91455 1.18940 0.94464 0.92909 0.95130 1.21593 0.98448 0.91526 1.02265 1.21149 0.91267 0.84321 1.00830 1.45023 1.11220 1.03113 1.78291 1.16091 0.84959 0.81302 0.77752 1.90913 1.15891 1.84209 1.58341 1.42354 1.10393 1.02733 1.76438 1.16810 0.94519 0.82194 0.95770 1.21323 0.97430 0.97453 1.02956 1.21006 0.99763 0.91193 0.96674 1.20498 0.92485 1.01806 1.03199 1.19505 0.90992 0.89197 0.94106 1.20728 1.00861 0.94363 1.05721 1.21876 0.93727 0.99744 0.98504 1.24098 0.95873 0.88496 0.94184 1.86821 1.45192 1.33611 1.57692 0.92826 0.98933 0.98912 0.91198 0.91238 0.93227 0.93095 0.74856 0.73859 0.85673 0.82780 0.83645 0.87451 0.88144 0.84764 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.84 13.29 21.45 0.28 -56.56 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 43.29 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -29.73 9.11 25.60 0.23 -29.50 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.10 -3.71 5.27 30.60 0.16 -3.54 16 11 C 0.15 5.07 5.67 86.38 0.49 5.56 16 12 N -0.72 -18.84 5.56 -478.53 -2.66 -21.50 16 13 C 0.70 20.27 8.41 179.05 1.51 21.78 16 14 O -0.61 -23.37 13.76 -3.99 -0.05 -23.42 16 15 N -0.67 -14.34 5.32 -317.47 -1.69 -16.03 16 16 C 0.20 4.84 6.29 38.05 0.24 5.08 16 17 C -0.17 -4.50 8.71 22.43 0.20 -4.30 16 18 C -0.07 -1.44 10.01 22.19 0.22 -1.21 16 19 C -0.16 -3.21 10.06 22.48 0.23 -2.98 16 20 C 0.11 2.28 7.03 22.66 0.16 2.43 16 21 C -0.21 -4.26 6.20 -19.32 -0.12 -4.38 16 22 C -0.10 -1.21 7.12 30.83 0.22 -0.99 16 23 C 0.05 0.53 8.00 72.56 0.58 1.11 16 24 O -0.32 -6.05 11.11 -95.21 -1.06 -7.10 16 25 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.41 7.67 8.49 -92.71 -0.79 6.88 16 33 H 0.42 5.71 8.84 -92.71 -0.82 4.89 16 34 H 0.13 3.86 6.21 -2.92 -0.02 3.84 16 35 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.13 0.70 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -74.04 339.33 1.03 -73.01 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.54 Total: 15.64 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 4.72 Total: -9.35 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -4.07 Total: -94.08 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.11 Total: -30.53 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -74.04 1.03 -73.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434142292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.520 kcal (2) G-P(sol) polarization free energy of solvation -74.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds