Wall clock time and date at job start Tue Mar 31 2020 06:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99676 * 2 1 4 4 H 1.48508 * 109.46907 * 269.99522 * 3 2 1 5 5 H 1.48494 * 109.47380 * 29.99533 * 3 2 1 6 6 H 1.48503 * 109.46774 * 150.00108 * 3 2 1 7 7 C 1.37866 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00214 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00000 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47180 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46793 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99561 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99960 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99915 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00144 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47141 * 179.97438 * 15 14 12 17 17 C 1.38291 * 120.11946 * 89.99957 * 16 15 14 18 18 C 1.37929 * 120.35446 * 180.17130 * 17 16 15 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 H 0.97008 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47059 * 60.00637 * 9 7 2 27 27 H 1.08997 * 109.47213 * 300.00164 * 9 7 2 28 28 H 1.08994 * 109.46774 * 60.00139 * 10 9 7 29 29 H 1.08997 * 109.47014 * 300.00080 * 10 9 7 30 30 H 0.96998 * 120.00367 * 359.97438 * 11 10 9 31 31 H 0.97006 * 119.99702 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.46903 * 59.99300 * 15 14 12 33 33 H 1.09006 * 109.46740 * 299.99901 * 15 14 12 34 34 H 1.08007 * 119.81963 * 0.19443 * 17 16 15 35 35 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.98294 * 179.61345 * 21 20 19 37 37 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 38 38 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 39 39 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 40 40 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4865 -2.6364 0.0022 12 6 6.1604 -3.8036 0.0018 13 8 5.5525 -4.8566 0.0009 14 7 7.5082 -3.8036 0.0034 15 6 8.2408 -5.0723 0.0024 16 6 9.7223 -4.7969 0.0039 17 6 10.4036 -4.6716 1.2008 18 6 11.7590 -4.4160 1.2079 19 6 12.4536 -4.2804 0.0082 20 6 11.7590 -4.4158 -1.1880 21 6 10.4058 -4.6681 -1.1921 22 6 12.7657 -4.2342 -2.3076 23 6 14.1098 -4.3974 -1.5590 24 8 13.7719 -4.0229 -0.2127 25 1 -0.4851 0.8401 -0.0004 26 1 3.8745 -0.6800 0.8912 27 1 3.8752 -0.6803 -0.8888 28 1 3.6586 -3.1500 -0.8892 29 1 3.6579 -3.1505 0.8907 30 1 5.9715 -1.7963 0.0025 31 1 7.9932 -2.9635 0.0045 32 1 7.9784 -5.6426 -0.8888 33 1 7.9763 -5.6452 0.8913 34 1 9.8715 -4.7748 2.1350 35 1 12.2835 -4.3200 2.1471 36 1 9.8776 -4.7647 -2.1292 37 1 12.6833 -3.2407 -2.7484 38 1 12.6467 -5.0066 -3.0674 39 1 14.4505 -5.4320 -1.5981 40 1 14.8649 -3.7279 -1.9710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543185016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:05 Heat of formation + Delta-G solvation = -43.236015 kcal Electronic energy + Delta-G solvation = -21512.822883 eV Core-core repulsion = 18099.677636 eV Total energy + Delta-G solvation = -3413.145247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49194 -39.67772 -38.15185 -35.18497 -34.37485 -33.10781 -32.76833 -31.10410 -29.82427 -29.59903 -26.29564 -24.46801 -23.73831 -22.34255 -21.36700 -20.77814 -20.62787 -18.15656 -17.78891 -17.10824 -16.86821 -16.59300 -16.04773 -15.42078 -15.08177 -14.50379 -14.30658 -14.08564 -13.89753 -13.68883 -13.60109 -13.46282 -13.37485 -12.89793 -12.58489 -12.48429 -12.22685 -11.85372 -11.45623 -11.28854 -11.18896 -11.13329 -10.36498 -10.25196 -9.96210 -9.77635 -9.30755 -9.28175 -9.06134 -8.60875 -8.48686 -8.35376 -6.09120 -4.08989 0.83345 0.94794 2.80553 2.97046 3.26533 3.34184 3.35603 3.44568 3.54730 3.95503 4.10151 4.39371 4.43926 4.48482 4.53649 4.65561 4.80470 4.91108 4.97603 5.14960 5.23832 5.27140 5.29170 5.36387 5.59816 5.70290 5.84886 5.98129 6.11070 6.18294 6.24630 6.27794 6.53326 6.62125 6.76635 6.84760 7.07514 7.27267 7.32822 7.69642 8.32436 8.48102 8.92819 8.96302 9.51079 11.03911 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.002446 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.517070 B =11446.737575 C =11943.430669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.148 3.852 11 N -0.742 5.742 12 C 0.699 3.301 13 O -0.595 6.595 14 N -0.750 5.750 15 C 0.187 3.813 16 C -0.132 4.132 17 C -0.063 4.063 18 C -0.140 4.140 19 C 0.110 3.890 20 C -0.179 4.179 21 C -0.049 4.049 22 C -0.111 4.111 23 C 0.051 3.949 24 O -0.306 6.306 25 H 0.264 0.736 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.394 0.606 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.588 -8.080 -2.375 31.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.026 3.974 11 N -0.396 5.396 12 C 0.399 3.601 13 O -0.473 6.473 14 N -0.407 5.407 15 C 0.063 3.937 16 C -0.133 4.133 17 C -0.082 4.082 18 C -0.159 4.159 19 C 0.064 3.936 20 C -0.180 4.180 21 C -0.067 4.067 22 C -0.148 4.148 23 C -0.024 4.024 24 O -0.220 6.220 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.224 0.776 31 H 0.228 0.772 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 29.982 -8.869 -2.234 31.346 hybrid contribution 0.840 1.728 -0.220 1.934 sum 30.823 -7.141 -2.454 31.734 Atomic orbital electron populations 1.69907 1.06276 1.27011 1.50530 1.25002 0.94771 0.99140 0.94433 0.86745 0.80261 0.83551 0.78457 1.20271 1.21313 1.19092 1.20923 0.88657 0.94903 1.51494 0.90572 1.19800 0.97914 0.91475 0.96776 1.21372 0.74774 0.99802 1.01497 1.45526 1.08909 1.06248 1.78915 1.16037 0.81182 0.84847 0.78052 1.90908 1.67726 1.30561 1.58154 1.45207 1.04865 1.08929 1.81737 1.19856 0.85106 0.85659 1.03085 1.19796 0.95550 1.05007 0.92923 1.20877 0.92763 0.96319 0.98198 1.20267 0.94087 1.05801 0.95719 1.19663 0.83766 0.95517 0.94628 1.20746 0.95095 1.07583 0.94527 1.20238 0.91793 0.96461 0.98234 1.21802 0.91899 1.03959 0.97109 1.23846 0.97474 1.01644 0.79405 1.86827 1.22922 1.79583 1.32635 0.92579 0.96031 0.96492 0.92168 0.92134 0.77585 0.77211 0.90929 0.90770 0.84668 0.85207 0.85406 0.89027 0.88918 0.90449 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.69 9.66 -34.44 -0.33 -15.03 16 8 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 9 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 10 C 0.15 3.09 5.61 -4.04 -0.02 3.07 16 11 N -0.74 -12.50 5.56 -65.22 -0.36 -12.87 16 12 C 0.70 11.81 8.57 -86.91 -0.74 11.07 16 13 O -0.60 -12.56 16.34 5.29 0.09 -12.47 16 14 N -0.75 -9.12 5.55 -66.41 -0.37 -9.49 16 15 C 0.19 2.01 5.81 -5.20 -0.03 1.98 16 16 C -0.13 -1.19 5.25 -104.56 -0.55 -1.73 16 17 C -0.06 -0.53 9.68 -39.68 -0.38 -0.91 16 18 C -0.14 -1.22 10.06 -39.30 -0.40 -1.61 16 19 C 0.11 1.04 7.04 -38.92 -0.27 0.76 16 20 C -0.18 -1.52 6.27 -104.09 -0.65 -2.18 16 21 C -0.05 -0.42 9.69 -39.75 -0.39 -0.80 16 22 C -0.11 -0.64 7.11 -26.51 -0.19 -0.83 16 23 C 0.05 0.28 8.01 38.06 0.30 0.59 16 24 O -0.31 -2.82 11.10 -20.14 -0.22 -3.05 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 27 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.39 5.47 8.49 -40.82 -0.35 5.12 16 31 H 0.39 3.89 8.48 -40.82 -0.35 3.55 16 32 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -34.44 340.37 -9.19 -43.63 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.69 Total: 3.73 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -3.87 Total: -4.39 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.04 Total: -49.05 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.14 Total: -15.52 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.44 -9.19 -43.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543185016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.399 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds