Wall clock time and date at job start Tue Mar 31 2020 06:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99676 * 2 1 4 4 H 1.48508 * 109.46907 * 269.99522 * 3 2 1 5 5 H 1.48494 * 109.47380 * 29.99533 * 3 2 1 6 6 H 1.48503 * 109.46774 * 150.00108 * 3 2 1 7 7 C 1.37866 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00214 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00000 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47180 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46793 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99561 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99960 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99915 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00144 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47141 * 179.97438 * 15 14 12 17 17 C 1.38291 * 120.11946 * 89.99957 * 16 15 14 18 18 C 1.37929 * 120.35446 * 180.17130 * 17 16 15 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 H 0.97008 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47059 * 60.00637 * 9 7 2 27 27 H 1.08997 * 109.47213 * 300.00164 * 9 7 2 28 28 H 1.08994 * 109.46774 * 60.00139 * 10 9 7 29 29 H 1.08997 * 109.47014 * 300.00080 * 10 9 7 30 30 H 0.96998 * 120.00367 * 359.97438 * 11 10 9 31 31 H 0.97006 * 119.99702 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.46903 * 59.99300 * 15 14 12 33 33 H 1.09006 * 109.46740 * 299.99901 * 15 14 12 34 34 H 1.08007 * 119.81963 * 0.19443 * 17 16 15 35 35 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.98294 * 179.61345 * 21 20 19 37 37 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 38 38 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 39 39 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 40 40 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 6 4.0215 -2.6365 0.0010 11 7 5.4865 -2.6364 0.0022 12 6 6.1604 -3.8036 0.0018 13 8 5.5525 -4.8566 0.0009 14 7 7.5082 -3.8036 0.0034 15 6 8.2408 -5.0723 0.0024 16 6 9.7223 -4.7969 0.0039 17 6 10.4036 -4.6716 1.2008 18 6 11.7590 -4.4160 1.2079 19 6 12.4536 -4.2804 0.0082 20 6 11.7590 -4.4158 -1.1880 21 6 10.4058 -4.6681 -1.1921 22 6 12.7657 -4.2342 -2.3076 23 6 14.1098 -4.3974 -1.5590 24 8 13.7719 -4.0229 -0.2127 25 1 -0.4851 0.8401 -0.0004 26 1 3.8745 -0.6800 0.8912 27 1 3.8752 -0.6803 -0.8888 28 1 3.6586 -3.1500 -0.8892 29 1 3.6579 -3.1505 0.8907 30 1 5.9715 -1.7963 0.0025 31 1 7.9932 -2.9635 0.0045 32 1 7.9784 -5.6426 -0.8888 33 1 7.9763 -5.6452 0.8913 34 1 9.8715 -4.7748 2.1350 35 1 12.2835 -4.3200 2.1471 36 1 9.8776 -4.7647 -2.1292 37 1 12.6833 -3.2407 -2.7484 38 1 12.6467 -5.0066 -3.0674 39 1 14.4505 -5.4320 -1.5981 40 1 14.8649 -3.7279 -1.9710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543185016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:05 Heat of formation + Delta-G solvation = -67.900309 kcal Electronic energy + Delta-G solvation = -21513.892407 eV Core-core repulsion = 18099.677636 eV Total energy + Delta-G solvation = -3414.214771 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.07898 -40.97733 -38.89202 -36.71613 -35.59050 -34.76149 -33.65135 -32.36577 -31.20211 -30.18262 -27.46446 -26.03658 -24.30411 -22.93680 -22.66598 -22.07241 -21.92218 -19.49420 -18.88334 -18.36433 -17.73225 -17.36881 -17.01070 -16.69868 -16.32610 -15.98188 -15.35173 -15.33411 -15.10375 -14.99415 -14.59987 -14.42633 -14.15309 -13.92503 -13.58549 -13.42455 -13.32390 -12.99541 -12.70617 -12.53734 -12.15403 -12.14068 -11.82799 -11.75203 -11.74302 -11.51466 -11.27621 -10.77248 -10.35648 -9.90232 -9.71566 -9.13443 -8.28284 -6.35374 0.15632 0.31662 1.40313 1.43069 1.54353 1.81204 2.18618 2.29847 2.38335 2.69121 3.06705 3.41802 3.47993 3.59765 3.77359 3.93623 4.15116 4.17978 4.36433 4.37501 4.40878 4.48165 4.65527 4.66485 4.72194 4.78487 4.86699 4.88296 5.09090 5.17792 5.20088 5.35987 5.43929 5.46395 5.47146 5.55004 5.60175 5.68910 6.05036 6.16858 6.25213 6.72026 7.15287 7.28985 7.61893 8.88463 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.002446 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.517070 B =11446.737575 C =11943.430669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.237 1.237 7 C -0.538 4.538 8 H 0.029 0.971 9 C -0.012 4.012 10 C 0.164 3.836 11 N -0.732 5.732 12 C 0.698 3.302 13 O -0.640 6.640 14 N -0.728 5.728 15 C 0.189 3.811 16 C -0.134 4.134 17 C -0.063 4.063 18 C -0.149 4.149 19 C 0.094 3.906 20 C -0.186 4.186 21 C -0.053 4.053 22 C -0.109 4.109 23 C 0.045 3.955 24 O -0.326 6.326 25 H 0.268 0.732 26 H 0.037 0.963 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.410 0.590 31 H 0.410 0.590 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.832 -6.595 -2.798 34.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.160 1.160 7 C -0.576 4.576 8 H 0.047 0.953 9 C -0.050 4.050 10 C 0.040 3.960 11 N -0.388 5.388 12 C 0.398 3.602 13 O -0.522 6.522 14 N -0.385 5.385 15 C 0.066 3.934 16 C -0.135 4.135 17 C -0.081 4.081 18 C -0.168 4.168 19 C 0.049 3.951 20 C -0.187 4.187 21 C -0.071 4.071 22 C -0.146 4.146 23 C -0.029 4.029 24 O -0.240 6.240 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.246 0.754 31 H 0.246 0.754 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 33.310 -7.375 -2.661 34.220 hybrid contribution -0.145 1.152 -0.101 1.165 sum 33.165 -6.223 -2.762 33.857 Atomic orbital electron populations 1.70080 1.08568 1.28391 1.52055 1.26089 0.95709 1.03888 0.93744 0.85522 0.79643 0.77300 0.79285 1.19019 1.21336 1.15980 1.21257 0.91596 0.93383 1.51409 0.95254 1.19647 0.94343 0.92922 0.98043 1.20873 0.77182 0.98181 0.99787 1.45132 1.07264 1.07343 1.79015 1.16154 0.82403 0.83927 0.77721 1.90885 1.69063 1.32147 1.60123 1.45039 1.03110 1.10408 1.79922 1.19879 0.86066 0.84761 1.02696 1.19606 0.94297 1.06099 0.93520 1.21001 0.92774 0.95862 0.98494 1.20467 0.94277 1.05779 0.96234 1.19942 0.84197 0.95721 0.95242 1.21053 0.95310 1.06939 0.95405 1.20360 0.92056 0.96285 0.98429 1.21892 0.91033 1.04943 0.96704 1.24133 0.97923 1.02950 0.77861 1.86798 1.22819 1.79805 1.34595 0.92361 0.94497 0.94636 0.94034 0.94047 0.75445 0.75430 0.91407 0.91177 0.83524 0.84193 0.84537 0.88307 0.87302 0.89406 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.44 0.30 -59.22 16 2 C 0.00 0.15 5.47 84.65 0.46 0.62 16 3 Si 0.96 42.40 27.47 68.60 1.88 44.29 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 7 C -0.54 -30.88 9.66 25.60 0.25 -30.63 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 9 C -0.01 -0.52 4.16 29.85 0.12 -0.40 16 10 C 0.16 6.83 5.61 86.38 0.48 7.31 16 11 N -0.73 -23.43 5.56 -478.53 -2.66 -26.09 16 12 C 0.70 22.82 8.57 179.05 1.53 24.36 16 13 O -0.64 -27.12 16.34 -4.00 -0.07 -27.18 16 14 N -0.73 -16.36 5.55 -482.29 -2.68 -19.04 16 15 C 0.19 3.83 5.81 85.63 0.50 4.32 16 16 C -0.13 -2.20 5.25 -19.83 -0.10 -2.30 16 17 C -0.06 -0.95 9.68 22.21 0.21 -0.74 16 18 C -0.15 -2.38 10.06 22.45 0.23 -2.16 16 19 C 0.09 1.64 7.04 22.70 0.16 1.80 16 20 C -0.19 -2.83 6.27 -19.52 -0.12 -2.95 16 21 C -0.05 -0.81 9.69 22.16 0.21 -0.60 16 22 C -0.11 -1.00 7.11 30.74 0.22 -0.78 16 23 C 0.05 0.40 8.01 72.57 0.58 0.98 16 24 O -0.33 -5.52 11.10 -94.99 -1.05 -6.57 16 25 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 26 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 27 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.41 10.15 8.49 -92.71 -0.79 9.36 16 31 H 0.41 6.95 8.48 -92.70 -0.79 6.17 16 32 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 33 H 0.07 1.51 8.09 -2.38 -0.02 1.49 16 34 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -76.34 340.37 -0.10 -76.44 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.56 Total: 18.53 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 4.74 Total: -1.16 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -5.04 Total: -104.35 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.12 Total: -33.75 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.29 kcal Total: -76.34 -0.10 -76.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543185016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.542 kcal (2) G-P(sol) polarization free energy of solvation -76.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds