Wall clock time and date at job start Tue Mar 31 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00367 * 2 1 4 4 H 1.48505 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46944 * 299.99484 * 3 2 1 6 6 H 1.48499 * 109.47288 * 59.99391 * 3 2 1 7 7 C 1.38811 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00099 * 179.55617 * 7 2 1 9 9 N 1.36938 * 120.00134 * 359.55712 * 7 2 1 10 10 C 1.46969 * 120.59374 * 217.26891 * 9 7 2 11 11 C 1.53366 * 108.63401 * 235.20187 * 10 9 7 12 12 N 1.46963 * 108.63686 * 310.57518 * 11 10 9 13 13 C 1.34778 * 120.59580 * 235.20426 * 12 11 10 14 14 O 1.21694 * 119.99917 * 183.45458 * 13 12 11 15 15 C 1.46658 * 120.00001 * 3.18604 * 13 12 11 16 16 O 1.34938 * 126.00218 * 352.37362 * 15 13 12 17 17 C 1.33956 * 109.37350 * 179.82911 * 16 15 13 18 18 C 1.35137 * 108.75456 * 0.43926 * 17 16 15 19 19 C 1.36471 * 126.00782 * 172.68746 * 15 13 12 20 20 C 1.51078 * 143.67160 * 0.02562 * 19 15 13 21 21 C 1.54366 * 105.24606 * 162.83534 * 20 19 15 22 22 C 1.51142 * 143.44649 * 179.74090 * 18 17 16 23 23 C 1.46967 * 118.81307 * 55.47781 * 12 11 10 24 24 C 1.46963 * 120.59488 * 37.24058 * 9 7 2 25 25 H 0.97007 * 119.99655 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.61388 * 115.45536 * 10 9 7 27 27 H 1.09004 * 109.75086 * 355.02846 * 10 9 7 28 28 H 1.08998 * 109.61525 * 190.83053 * 11 10 9 29 29 H 1.09003 * 109.61421 * 70.32148 * 11 10 9 30 30 H 1.07999 * 125.62044 * 180.17644 * 17 16 15 31 31 H 1.09001 * 110.29121 * 281.76240 * 20 19 15 32 32 H 1.09000 * 110.28735 * 43.87816 * 20 19 15 33 33 H 1.09003 * 110.74964 * 268.13304 * 21 20 19 34 34 H 1.08996 * 110.92526 * 144.82585 * 21 20 19 35 35 H 1.09002 * 110.28603 * 316.11755 * 22 18 17 36 36 H 1.09004 * 110.28312 * 78.12830 * 22 18 17 37 37 H 1.08995 * 109.60989 * 64.26388 * 23 12 11 38 38 H 1.08994 * 109.61175 * 184.78435 * 23 12 11 39 39 H 1.09000 * 109.61135 * 244.54057 * 24 9 7 40 40 H 1.08998 * 109.60675 * 5.05585 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 -0.0067 9 7 1.3255 -2.3881 0.0102 10 6 1.8285 -3.5359 0.7779 11 6 1.9661 -4.7355 -0.1677 12 7 0.7148 -4.8830 -0.9243 13 6 0.0409 -6.0502 -0.9148 14 8 -0.9598 -6.1805 -1.5948 15 6 0.5170 -7.1651 -0.0894 16 8 1.6826 -7.2085 0.5890 17 6 1.7787 -8.3792 1.2329 18 6 0.6748 -9.1125 0.9682 19 6 -0.1382 -8.3433 0.1226 20 6 -1.3938 -9.1147 -0.2103 21 6 -1.0761 -10.5819 0.1493 22 6 0.0028 -10.4379 1.2439 23 6 0.2147 -3.7369 -1.6966 24 6 0.0742 -2.5355 -0.7463 25 1 -0.4850 0.8401 -0.0004 26 1 1.1268 -3.7780 1.5762 27 1 2.8012 -3.2946 1.2066 28 1 2.1514 -5.6394 0.4125 29 1 2.7927 -4.5648 -0.8574 30 1 2.6043 -8.6880 1.8569 31 1 -2.2300 -8.7519 0.3874 32 1 -1.6211 -9.0264 -1.2727 33 1 -0.6803 -11.1145 -0.7155 34 1 -1.9591 -11.0867 0.5411 35 1 0.7257 -11.2505 1.1713 36 1 -0.4578 -10.4298 2.2318 37 1 0.9195 -3.4966 -2.4925 38 1 -0.7568 -3.9811 -2.1260 39 1 -0.7524 -2.7064 -0.0566 40 1 -0.1111 -1.6316 -1.3266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586784707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:53 Heat of formation + Delta-G solvation = 26.127258 kcal Electronic energy + Delta-G solvation = -23496.059176 eV Core-core repulsion = 20085.921746 eV Total energy + Delta-G solvation = -3410.137430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.89340 -39.29767 -37.47058 -36.69639 -33.88269 -31.21325 -30.90905 -30.72874 -29.84887 -27.51794 -26.59095 -24.05856 -23.03245 -22.72582 -21.62755 -20.35765 -19.89822 -18.73919 -17.16558 -16.52207 -16.49670 -16.00343 -15.43329 -15.14851 -14.82961 -14.45006 -14.26547 -13.72042 -13.52137 -13.29484 -13.17278 -13.05083 -12.80559 -12.39178 -11.99597 -11.69578 -11.47154 -11.30743 -11.29713 -11.05094 -10.89179 -10.64529 -10.49610 -10.20106 -10.09028 -9.93130 -9.64161 -9.30234 -8.61680 -8.54920 -8.20127 -6.58347 -5.85808 -3.42787 1.19251 2.30244 2.73042 3.32477 3.39905 3.40582 3.42408 3.54252 3.96915 4.42420 4.60869 4.68912 4.85735 5.00822 5.08974 5.21668 5.33919 5.48832 5.54697 5.59507 5.72148 5.81170 5.82302 5.84311 5.93118 6.00092 6.05162 6.11283 6.26140 6.33606 6.36034 6.43826 6.59138 6.75326 6.87156 6.97612 7.27937 7.62087 7.72535 7.83666 8.42788 8.43983 9.14619 9.72165 10.34006 11.20583 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036854 B = 0.003780 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.571348 B = 7404.728443 C = 7869.936414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.012 3.988 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.133 3.867 11 C 0.073 3.927 12 N -0.584 5.584 13 C 0.590 3.410 14 O -0.536 6.536 15 C -0.047 4.047 16 O -0.145 6.145 17 C -0.007 4.007 18 C -0.219 4.219 19 C -0.116 4.116 20 C -0.053 4.053 21 C -0.118 4.118 22 C -0.045 4.045 23 C 0.085 3.915 24 C 0.159 3.841 25 H 0.256 0.744 26 H 0.023 0.977 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.206 0.794 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.023 0.977 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.830 -19.226 1.996 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.006 3.994 11 C -0.051 4.051 12 N -0.315 5.315 13 C 0.378 3.622 14 O -0.416 6.416 15 C -0.098 4.098 16 O -0.042 6.042 17 C -0.076 4.076 18 C -0.220 4.220 19 C -0.119 4.119 20 C -0.090 4.090 21 C -0.156 4.156 22 C -0.082 4.082 23 C -0.038 4.038 24 C 0.033 3.967 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.222 0.778 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.405 -18.841 1.626 18.963 hybrid contribution 0.549 0.846 0.222 1.032 sum 1.954 -17.995 1.848 18.195 Atomic orbital electron populations 1.69904 1.05434 1.25679 1.53486 1.25393 0.95534 0.98539 0.99310 0.86172 0.79350 0.83602 0.77347 1.20133 1.21511 1.21452 1.19189 0.90274 0.82914 1.46638 0.91719 1.43927 1.25612 1.09152 1.52820 1.21288 0.98484 0.87458 0.92173 1.22959 0.85051 1.01269 0.95795 1.48030 1.24373 1.11361 1.47691 1.16777 0.83578 0.80806 0.81071 1.90807 1.25996 1.81716 1.43120 1.21373 0.87560 0.97633 1.03234 1.84435 1.35437 1.33924 1.50399 1.23510 0.99864 0.84585 0.99623 1.21277 0.96549 0.99958 1.04218 1.21123 0.98728 0.92769 0.99256 1.20519 0.93370 0.92448 1.02695 1.22372 0.98552 0.96166 0.98487 1.20418 0.96492 0.92010 0.99307 1.22775 0.99336 0.86470 0.95239 1.21360 0.87831 0.94777 0.92749 0.93358 0.95937 0.91417 0.88316 0.91483 0.77769 0.89931 0.90001 0.90946 0.90332 0.90971 0.90433 0.91859 0.89996 0.95844 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.71 10.88 55.49 0.60 -25.10 16 2 C 0.01 0.32 5.25 -17.43 -0.09 0.23 16 3 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.26 -6.99 9.53 -15.06 -0.14 -7.13 16 8 H 0.07 1.70 7.83 -52.48 -0.41 1.28 16 9 N -0.59 -14.77 2.95 -171.76 -0.51 -15.27 16 10 C 0.13 2.78 6.67 -3.60 -0.02 2.75 16 11 C 0.07 1.31 6.47 -3.60 -0.02 1.29 16 12 N -0.58 -11.53 2.94 -173.76 -0.51 -12.04 16 13 C 0.59 11.56 7.66 -12.86 -0.10 11.46 16 14 O -0.54 -11.58 16.29 5.19 0.08 -11.50 16 15 C -0.05 -0.78 6.85 -36.82 -0.25 -1.04 16 16 O -0.15 -2.09 7.08 4.86 0.03 -2.06 16 17 C -0.01 -0.08 12.08 29.63 0.36 0.28 16 18 C -0.22 -2.61 6.93 -104.74 -0.73 -3.34 16 19 C -0.12 -1.71 6.67 -104.31 -0.70 -2.40 16 20 C -0.05 -0.65 6.76 -26.98 -0.18 -0.83 16 21 C -0.12 -1.03 7.06 -25.30 -0.18 -1.21 16 22 C -0.05 -0.40 6.76 -26.95 -0.18 -0.58 16 23 C 0.08 1.77 6.62 -3.36 -0.02 1.75 16 24 C 0.16 3.87 5.44 -3.36 -0.02 3.85 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 28 H 0.10 1.59 3.74 -55.44 -0.21 1.38 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.21 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.68 7.00 -51.93 -0.36 1.32 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.11 2.79 6.11 -51.93 -0.32 2.47 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -31.66 322.16 -8.24 -39.90 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.50 Total: -0.03 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -2.28 Total: 5.06 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.41 Total: -52.42 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.12 Total: -13.56 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.66 -8.24 -39.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586784707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.031 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds