Wall clock time and date at job start Tue Mar 31 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00367 * 2 1 4 4 H 1.48505 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46944 * 299.99484 * 3 2 1 6 6 H 1.48499 * 109.47288 * 59.99391 * 3 2 1 7 7 C 1.38811 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00099 * 179.55617 * 7 2 1 9 9 N 1.36938 * 120.00134 * 359.55712 * 7 2 1 10 10 C 1.46969 * 120.59374 * 217.26891 * 9 7 2 11 11 C 1.53366 * 108.63401 * 235.20187 * 10 9 7 12 12 N 1.46963 * 108.63686 * 310.57518 * 11 10 9 13 13 C 1.34778 * 120.59580 * 235.20426 * 12 11 10 14 14 O 1.21694 * 119.99917 * 183.45458 * 13 12 11 15 15 C 1.46658 * 120.00001 * 3.18604 * 13 12 11 16 16 O 1.34938 * 126.00218 * 352.37362 * 15 13 12 17 17 C 1.33956 * 109.37350 * 179.82911 * 16 15 13 18 18 C 1.35137 * 108.75456 * 0.43926 * 17 16 15 19 19 C 1.36471 * 126.00782 * 172.68746 * 15 13 12 20 20 C 1.51078 * 143.67160 * 0.02562 * 19 15 13 21 21 C 1.54366 * 105.24606 * 162.83534 * 20 19 15 22 22 C 1.51142 * 143.44649 * 179.74090 * 18 17 16 23 23 C 1.46967 * 118.81307 * 55.47781 * 12 11 10 24 24 C 1.46963 * 120.59488 * 37.24058 * 9 7 2 25 25 H 0.97007 * 119.99655 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.61388 * 115.45536 * 10 9 7 27 27 H 1.09004 * 109.75086 * 355.02846 * 10 9 7 28 28 H 1.08998 * 109.61525 * 190.83053 * 11 10 9 29 29 H 1.09003 * 109.61421 * 70.32148 * 11 10 9 30 30 H 1.07999 * 125.62044 * 180.17644 * 17 16 15 31 31 H 1.09001 * 110.29121 * 281.76240 * 20 19 15 32 32 H 1.09000 * 110.28735 * 43.87816 * 20 19 15 33 33 H 1.09003 * 110.74964 * 268.13304 * 21 20 19 34 34 H 1.08996 * 110.92526 * 144.82585 * 21 20 19 35 35 H 1.09002 * 110.28603 * 316.11755 * 22 18 17 36 36 H 1.09004 * 110.28312 * 78.12830 * 22 18 17 37 37 H 1.08995 * 109.60989 * 64.26388 * 23 12 11 38 38 H 1.08994 * 109.61175 * 184.78435 * 23 12 11 39 39 H 1.09000 * 109.61135 * 244.54057 * 24 9 7 40 40 H 1.08998 * 109.60675 * 5.05585 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 -0.0067 9 7 1.3255 -2.3881 0.0102 10 6 1.8285 -3.5359 0.7779 11 6 1.9661 -4.7355 -0.1677 12 7 0.7148 -4.8830 -0.9243 13 6 0.0409 -6.0502 -0.9148 14 8 -0.9598 -6.1805 -1.5948 15 6 0.5170 -7.1651 -0.0894 16 8 1.6826 -7.2085 0.5890 17 6 1.7787 -8.3792 1.2329 18 6 0.6748 -9.1125 0.9682 19 6 -0.1382 -8.3433 0.1226 20 6 -1.3938 -9.1147 -0.2103 21 6 -1.0761 -10.5819 0.1493 22 6 0.0028 -10.4379 1.2439 23 6 0.2147 -3.7369 -1.6966 24 6 0.0742 -2.5355 -0.7463 25 1 -0.4850 0.8401 -0.0004 26 1 1.1268 -3.7780 1.5762 27 1 2.8012 -3.2946 1.2066 28 1 2.1514 -5.6394 0.4125 29 1 2.7927 -4.5648 -0.8574 30 1 2.6043 -8.6880 1.8569 31 1 -2.2300 -8.7519 0.3874 32 1 -1.6211 -9.0264 -1.2727 33 1 -0.6803 -11.1145 -0.7155 34 1 -1.9591 -11.0867 0.5411 35 1 0.7257 -11.2505 1.1713 36 1 -0.4578 -10.4298 2.2318 37 1 0.9195 -3.4966 -2.4925 38 1 -0.7568 -3.9811 -2.1260 39 1 -0.7524 -2.7064 -0.0566 40 1 -0.1111 -1.6316 -1.3266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586784707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:53 Heat of formation + Delta-G solvation = 6.962747 kcal Electronic energy + Delta-G solvation = -23496.890212 eV Core-core repulsion = 20085.921746 eV Total energy + Delta-G solvation = -3410.968466 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.93947 -40.85255 -38.63422 -38.14618 -35.68895 -33.13597 -32.40847 -31.68954 -31.11678 -28.97530 -27.91540 -25.75093 -24.66388 -23.96168 -22.86916 -21.54026 -21.30516 -20.10898 -18.77377 -17.91386 -17.62413 -17.43842 -16.89756 -16.73568 -16.09227 -15.81691 -15.47939 -15.34787 -15.26955 -14.98351 -14.77096 -14.10623 -13.97637 -13.65461 -13.38247 -13.00800 -12.85917 -12.64952 -12.58394 -12.47633 -12.17164 -12.08039 -12.05371 -12.04258 -11.94803 -11.69403 -11.24897 -10.62494 -10.28300 -9.98684 -9.50870 -8.58097 -7.90724 -5.52487 0.01313 1.34241 1.47296 1.48643 1.55756 1.59408 1.99659 2.13648 2.49012 3.06238 3.26330 3.44403 3.62646 3.83938 4.12030 4.15630 4.18951 4.21216 4.21842 4.36326 4.40572 4.57805 4.60135 4.72592 4.79864 4.84668 4.87718 4.98211 5.00555 5.05123 5.14660 5.18095 5.25521 5.34445 5.40167 5.52714 5.60706 5.64181 5.89108 6.33897 6.39196 6.92067 7.09516 7.72794 8.31714 9.13776 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036854 B = 0.003780 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.571348 B = 7404.728443 C = 7869.936414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.043 4.043 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.270 4.270 8 H 0.073 0.927 9 N -0.610 5.610 10 C 0.132 3.868 11 C 0.084 3.916 12 N -0.593 5.593 13 C 0.588 3.412 14 O -0.569 6.569 15 C -0.094 4.094 16 O -0.155 6.155 17 C 0.016 3.984 18 C -0.228 4.228 19 C -0.120 4.120 20 C -0.063 4.063 21 C -0.110 4.110 22 C -0.042 4.042 23 C 0.099 3.901 24 C 0.171 3.829 25 H 0.252 0.748 26 H 0.011 0.989 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.256 0.744 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.079 0.921 39 H -0.008 1.008 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 -21.799 3.231 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.238 4.238 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.399 4.399 8 H 0.090 0.910 9 N -0.333 5.333 10 C 0.006 3.994 11 C -0.038 4.038 12 N -0.323 5.323 13 C 0.378 3.622 14 O -0.452 6.452 15 C -0.144 4.144 16 O -0.053 6.053 17 C -0.051 4.051 18 C -0.230 4.230 19 C -0.123 4.123 20 C -0.101 4.101 21 C -0.147 4.147 22 C -0.078 4.078 23 C -0.024 4.024 24 C 0.045 3.955 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.101 0.899 28 H 0.142 0.858 29 H 0.093 0.907 30 H 0.271 0.729 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.010 0.990 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.460 -21.446 2.870 21.912 hybrid contribution -0.087 1.506 -0.092 1.511 sum 3.373 -19.940 2.778 20.413 Atomic orbital electron populations 1.70089 1.06976 1.26082 1.54903 1.26176 0.96272 1.01915 0.99486 0.85104 0.78748 0.79231 0.76713 1.18581 1.21709 1.21853 1.19549 0.90804 0.83768 1.45827 0.90961 1.44168 1.25432 1.10000 1.53747 1.21418 0.98594 0.87163 0.92239 1.22919 0.84456 1.01044 0.95410 1.48072 1.25067 1.11153 1.48020 1.17140 0.82951 0.81268 0.80824 1.90766 1.27317 1.82516 1.44605 1.20811 0.89719 0.97742 1.06134 1.84266 1.34571 1.35719 1.50743 1.24524 1.00521 0.82601 0.97500 1.21784 0.96312 1.01130 1.03726 1.21666 0.99725 0.92344 0.98594 1.20720 0.92632 0.94896 1.01810 1.22400 0.99768 0.93500 0.99024 1.20536 0.96666 0.90904 0.99738 1.22401 0.99627 0.85856 0.94546 1.21024 0.87118 0.95077 0.92299 0.93835 0.97141 0.89865 0.85754 0.90672 0.72867 0.90065 0.91524 0.90283 0.87970 0.88476 0.89082 0.91142 0.90267 0.98987 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.19 10.88 21.65 0.24 -54.96 16 2 C -0.04 -2.35 5.25 84.86 0.45 -1.90 16 3 Si 0.97 44.01 29.55 68.60 2.03 46.04 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.27 -14.56 9.53 84.03 0.80 -13.76 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.61 -31.02 2.95 -697.33 -2.06 -33.08 16 10 C 0.13 5.49 6.67 86.41 0.58 6.07 16 11 C 0.08 2.98 6.47 86.41 0.56 3.54 16 12 N -0.59 -23.82 2.94 -821.89 -2.42 -26.24 16 13 C 0.59 23.59 7.66 86.44 0.66 24.25 16 14 O -0.57 -25.63 16.29 -4.33 -0.07 -25.71 16 15 C -0.09 -3.09 6.85 24.06 0.16 -2.93 16 16 O -0.16 -4.15 7.08 -5.52 -0.04 -4.19 16 17 C 0.02 0.30 12.08 67.11 0.81 1.11 16 18 C -0.23 -4.69 6.93 -19.94 -0.14 -4.83 16 19 C -0.12 -3.40 6.67 -19.66 -0.13 -3.54 16 20 C -0.06 -1.49 6.76 30.43 0.21 -1.29 16 21 C -0.11 -1.58 7.06 31.52 0.22 -1.36 16 22 C -0.04 -0.55 6.76 30.45 0.21 -0.35 16 23 C 0.10 4.31 6.62 86.57 0.57 4.88 16 24 C 0.17 8.75 5.44 86.57 0.47 9.22 16 25 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.08 3.16 7.94 -2.38 -0.02 3.14 16 28 H 0.13 3.80 3.74 -57.98 -0.22 3.59 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.26 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.08 3.44 7.00 -2.39 -0.02 3.42 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.08 4.40 6.11 -2.39 -0.01 4.39 16 Total: -1.00 -71.66 322.16 3.95 -67.71 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.84 Total: 11.28 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 5.43 Total: 19.13 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -4.24 Total: -114.28 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.11 Total: -29.89 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.66 3.95 -67.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586784707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.675 kcal (2) G-P(sol) polarization free energy of solvation -71.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds