Wall clock time and date at job start Tue Mar 31 2020 06:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99670 * 2 1 4 4 H 1.48502 * 109.47038 * 269.99511 * 3 2 1 5 5 H 1.48495 * 109.47671 * 29.99905 * 3 2 1 6 6 H 1.48501 * 109.47149 * 149.99946 * 3 2 1 7 7 C 1.37875 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99355 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00049 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46828 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47049 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47049 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46828 * 179.97438 * 12 11 10 14 14 O 1.21296 * 120.00334 * 5.43116 * 13 12 11 15 15 N 1.34781 * 120.00083 * 185.43208 * 13 12 11 16 16 C 1.47355 * 121.18762 * 354.23849 * 15 13 12 17 17 C 1.53536 * 107.51978 * 221.67271 * 16 15 13 18 18 O 1.42932 * 108.85968 * 301.76703 * 17 16 15 19 19 C 1.35780 * 117.79946 * 49.79444 * 18 17 16 20 20 N 1.32439 * 119.53254 * 159.63040 * 19 18 17 21 21 C 1.31913 * 121.81527 * 179.78303 * 20 19 18 22 22 C 1.38078 * 121.19555 * 0.02562 * 21 20 19 23 23 C 1.38847 * 119.14988 * 0.29964 * 22 21 20 24 24 C 1.38663 * 118.23829 * 359.51022 * 23 22 21 25 25 H 0.97001 * 120.00553 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46744 * 60.00036 * 9 7 2 27 27 H 1.08997 * 109.47019 * 300.00088 * 9 7 2 28 28 H 1.09001 * 109.47353 * 60.00501 * 10 9 7 29 29 H 1.08997 * 109.47467 * 299.99905 * 10 9 7 30 30 H 1.09001 * 109.46855 * 59.99925 * 11 10 9 31 31 H 1.08997 * 109.46687 * 300.00112 * 11 10 9 32 32 H 1.09001 * 109.47353 * 60.00230 * 12 11 10 33 33 H 1.08997 * 109.47467 * 299.99634 * 12 11 10 34 34 H 1.09002 * 109.84740 * 341.18092 * 16 15 13 35 35 H 1.09001 * 109.84425 * 102.16653 * 16 15 13 36 36 H 1.08993 * 109.57117 * 61.58456 * 17 16 15 37 37 H 1.08995 * 109.56997 * 181.95627 * 17 16 15 38 38 H 1.07996 * 119.40424 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.42371 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.88480 * 179.76960 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0215 -2.6364 0.0014 11 6 5.5516 -2.6364 0.0014 12 6 6.0616 -4.0789 0.0035 13 6 7.5686 -4.0788 0.0029 14 8 8.1751 -3.0329 0.1004 15 7 8.2425 -5.2410 -0.1060 16 6 7.5379 -6.5351 -0.0997 17 6 8.3577 -7.5034 0.7650 18 8 9.6747 -7.6083 0.2194 19 6 10.3381 -6.4569 -0.0595 20 7 11.6575 -6.4746 -0.1722 21 6 12.3468 -5.3837 -0.4461 22 6 11.7186 -4.1676 -0.6280 23 6 10.3367 -4.0964 -0.5132 24 6 9.6411 -5.2616 -0.2286 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6795 0.8895 27 1 3.8745 -0.6807 -0.8905 28 1 3.6580 -3.1513 -0.8879 29 1 3.6586 -3.1493 0.8920 30 1 5.9149 -2.1217 0.8909 31 1 5.9149 -2.1234 -0.8890 32 1 5.6983 -4.5940 -0.8858 33 1 5.6983 -4.5915 0.8942 34 1 6.5418 -6.4121 0.3253 35 1 7.4623 -6.9203 -1.1166 36 1 8.4141 -7.1237 1.7851 37 1 7.8831 -8.4846 0.7644 38 1 13.4220 -5.4426 -0.5288 39 1 12.2951 -3.2824 -0.8522 40 1 9.8170 -3.1591 -0.6462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588939993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:45 Heat of formation + Delta-G solvation = -31.245085 kcal Electronic energy + Delta-G solvation = -22394.928992 eV Core-core repulsion = 18982.303711 eV Total energy + Delta-G solvation = -3412.625282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.88226 -39.71954 -38.66058 -35.98569 -35.24315 -32.88092 -32.20712 -31.54769 -30.33793 -28.79545 -26.22206 -25.11941 -24.22935 -22.48624 -21.71864 -20.15371 -19.72992 -18.85111 -17.82779 -17.63294 -16.67778 -16.54799 -16.16385 -15.79347 -15.49608 -14.89531 -14.69080 -14.34583 -14.17178 -13.89383 -13.64236 -13.29090 -12.75179 -12.61933 -12.55187 -12.25954 -12.02579 -11.83853 -11.60169 -11.24206 -11.01466 -10.84816 -10.64691 -10.43066 -9.94105 -9.75133 -9.69662 -9.56268 -9.26995 -9.18231 -8.54421 -8.28235 -6.05423 -4.03432 0.73080 1.00436 2.16461 2.27092 2.44519 3.31116 3.38617 3.43558 3.52561 3.87365 3.95745 4.29506 4.40157 4.45289 4.49468 4.55762 4.78282 4.80382 4.97494 4.99497 5.05685 5.07415 5.16427 5.29214 5.45092 5.57825 5.86869 5.92521 5.94818 5.98783 6.21121 6.27449 6.55214 6.66135 6.73104 6.77129 6.89795 7.29750 7.42782 7.68422 7.71172 7.79210 8.52460 8.99085 9.57671 11.08002 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.002878 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.337566 B = 9725.377121 C =10548.445795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.108 4.108 12 C -0.136 4.136 13 C 0.519 3.481 14 O -0.509 6.509 15 N -0.561 5.561 16 C 0.061 3.939 17 C 0.053 3.947 18 O -0.300 6.300 19 C 0.297 3.703 20 N -0.481 5.481 21 C 0.109 3.891 22 C -0.180 4.180 23 C -0.075 4.075 24 C 0.044 3.956 25 H 0.263 0.737 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.164 0.836 39 H 0.142 0.858 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.401 -15.244 -0.249 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.140 4.140 11 C -0.146 4.146 12 C -0.176 4.176 13 C 0.310 3.690 14 O -0.384 6.384 15 N -0.287 5.287 16 C -0.061 4.061 17 C -0.023 4.023 18 O -0.209 6.209 19 C 0.115 3.885 20 N -0.200 5.200 21 C -0.048 4.048 22 C -0.201 4.201 23 C -0.103 4.103 24 C -0.053 4.053 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.151 0.849 38 H 0.181 0.819 39 H 0.160 0.840 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 21.906 -15.536 -0.080 26.856 hybrid contribution -0.289 1.701 -0.092 1.728 sum 21.617 -13.835 -0.172 25.666 Atomic orbital electron populations 1.69914 1.06316 1.26897 1.51285 1.25042 0.94734 0.99237 0.94558 0.86776 0.80414 0.83563 0.78548 1.20301 1.21416 1.18925 1.21162 0.89597 0.94400 1.50742 0.91097 1.19570 0.96994 0.92329 0.96351 1.21476 0.91291 1.00155 1.01047 1.21537 0.97611 0.92272 1.03151 1.21869 0.88623 1.02504 1.04562 1.21401 0.91314 0.81752 0.74514 1.90560 1.69711 1.31202 1.46940 1.45967 1.04029 1.07868 1.70867 1.22824 0.97838 0.82621 1.02815 1.23429 0.80126 1.02152 0.96641 1.85936 1.29468 1.27111 1.78353 1.19028 0.88558 0.83847 0.97059 1.66871 1.04544 1.32256 1.16321 1.22464 0.99838 0.86723 0.95725 1.22110 0.94760 0.99645 1.03590 1.22255 0.94259 0.99181 0.94570 1.18845 0.84105 0.95655 1.06710 0.92757 0.96592 0.97046 0.92750 0.92722 0.91435 0.91676 0.88466 0.88325 0.86491 0.88808 0.90658 0.84935 0.81862 0.84026 0.80828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.02 -0.36 4.04 -27.88 -0.11 -0.47 16 10 C -0.10 -1.87 5.15 -26.73 -0.14 -2.01 16 11 C -0.11 -1.64 4.52 -26.73 -0.12 -1.76 16 12 C -0.14 -1.49 4.18 -27.88 -0.12 -1.61 16 13 C 0.52 6.46 7.59 -10.98 -0.08 6.38 16 14 O -0.51 -7.93 12.88 5.54 0.07 -7.86 16 15 N -0.56 -6.01 3.01 -112.26 -0.34 -6.35 16 16 C 0.06 0.40 6.41 -3.30 -0.02 0.38 16 17 C 0.05 0.34 7.17 37.44 0.27 0.61 16 18 O -0.30 -3.25 10.40 -19.05 -0.20 -3.45 16 19 C 0.30 3.68 7.58 -16.86 -0.13 3.55 16 20 N -0.48 -6.00 10.38 -13.15 -0.14 -6.14 16 21 C 0.11 1.06 11.16 -17.58 -0.20 0.86 16 22 C -0.18 -1.73 10.12 -39.41 -0.40 -2.13 16 23 C -0.08 -0.91 9.04 -39.20 -0.35 -1.27 16 24 C 0.04 0.54 6.33 -83.34 -0.53 0.01 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 33 H 0.10 0.88 7.62 -51.93 -0.40 0.48 16 34 H 0.12 0.48 6.45 -51.93 -0.33 0.14 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.17 2.32 5.24 -52.50 -0.27 2.04 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -35.46 328.74 -7.48 -42.94 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.58 Total: -3.44 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -2.36 Total: -10.76 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.30 Total: -39.63 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.13 Total: -11.31 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.46 -7.48 -42.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588939993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.698 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds