Wall clock time and date at job start Tue Mar 31 2020 06:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99670 * 2 1 4 4 H 1.48502 * 109.47038 * 269.99511 * 3 2 1 5 5 H 1.48495 * 109.47671 * 29.99905 * 3 2 1 6 6 H 1.48501 * 109.47149 * 149.99946 * 3 2 1 7 7 C 1.37875 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99355 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00049 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46828 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47049 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47049 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46828 * 179.97438 * 12 11 10 14 14 O 1.21296 * 120.00334 * 5.43116 * 13 12 11 15 15 N 1.34781 * 120.00083 * 185.43208 * 13 12 11 16 16 C 1.47355 * 121.18762 * 354.23849 * 15 13 12 17 17 C 1.53536 * 107.51978 * 221.67271 * 16 15 13 18 18 O 1.42932 * 108.85968 * 301.76703 * 17 16 15 19 19 C 1.35780 * 117.79946 * 49.79444 * 18 17 16 20 20 N 1.32439 * 119.53254 * 159.63040 * 19 18 17 21 21 C 1.31913 * 121.81527 * 179.78303 * 20 19 18 22 22 C 1.38078 * 121.19555 * 0.02562 * 21 20 19 23 23 C 1.38847 * 119.14988 * 0.29964 * 22 21 20 24 24 C 1.38663 * 118.23829 * 359.51022 * 23 22 21 25 25 H 0.97001 * 120.00553 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46744 * 60.00036 * 9 7 2 27 27 H 1.08997 * 109.47019 * 300.00088 * 9 7 2 28 28 H 1.09001 * 109.47353 * 60.00501 * 10 9 7 29 29 H 1.08997 * 109.47467 * 299.99905 * 10 9 7 30 30 H 1.09001 * 109.46855 * 59.99925 * 11 10 9 31 31 H 1.08997 * 109.46687 * 300.00112 * 11 10 9 32 32 H 1.09001 * 109.47353 * 60.00230 * 12 11 10 33 33 H 1.08997 * 109.47467 * 299.99634 * 12 11 10 34 34 H 1.09002 * 109.84740 * 341.18092 * 16 15 13 35 35 H 1.09001 * 109.84425 * 102.16653 * 16 15 13 36 36 H 1.08993 * 109.57117 * 61.58456 * 17 16 15 37 37 H 1.08995 * 109.56997 * 181.95627 * 17 16 15 38 38 H 1.07996 * 119.40424 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.42371 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.88480 * 179.76960 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0215 -2.6364 0.0014 11 6 5.5516 -2.6364 0.0014 12 6 6.0616 -4.0789 0.0035 13 6 7.5686 -4.0788 0.0029 14 8 8.1751 -3.0329 0.1004 15 7 8.2425 -5.2410 -0.1060 16 6 7.5379 -6.5351 -0.0997 17 6 8.3577 -7.5034 0.7650 18 8 9.6747 -7.6083 0.2194 19 6 10.3381 -6.4569 -0.0595 20 7 11.6575 -6.4746 -0.1722 21 6 12.3468 -5.3837 -0.4461 22 6 11.7186 -4.1676 -0.6280 23 6 10.3367 -4.0964 -0.5132 24 6 9.6411 -5.2616 -0.2286 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6795 0.8895 27 1 3.8745 -0.6807 -0.8905 28 1 3.6580 -3.1513 -0.8879 29 1 3.6586 -3.1493 0.8920 30 1 5.9149 -2.1217 0.8909 31 1 5.9149 -2.1234 -0.8890 32 1 5.6983 -4.5940 -0.8858 33 1 5.6983 -4.5915 0.8942 34 1 6.5418 -6.4121 0.3253 35 1 7.4623 -6.9203 -1.1166 36 1 8.4141 -7.1237 1.7851 37 1 7.8831 -8.4846 0.7644 38 1 13.4220 -5.4426 -0.5288 39 1 12.2951 -3.2824 -0.8522 40 1 9.8170 -3.1591 -0.6462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588939993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:44 Heat of formation + Delta-G solvation = -56.476171 kcal Electronic energy + Delta-G solvation = -22396.023094 eV Core-core repulsion = 18982.303711 eV Total energy + Delta-G solvation = -3413.719384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.66053 -40.60840 -39.38068 -36.93984 -36.59143 -34.68991 -33.25001 -32.30528 -31.71532 -29.68581 -27.68073 -25.80912 -25.24917 -23.74730 -22.67087 -21.74944 -20.57753 -19.59484 -18.89448 -18.56042 -18.40860 -17.42033 -17.02302 -16.53516 -16.39629 -16.29404 -15.79061 -15.54343 -15.15944 -14.74944 -14.56902 -14.52585 -14.22519 -13.79084 -13.72310 -13.52392 -13.27996 -12.89661 -12.62878 -12.36012 -12.22180 -12.12449 -11.79561 -11.76231 -11.50879 -11.36177 -11.28034 -11.22462 -10.75986 -10.45653 -10.11262 -9.07591 -8.29628 -6.32573 -0.06952 0.16423 1.34659 1.36462 1.39905 1.42334 1.48566 1.78615 2.35641 2.72714 3.06128 3.16928 3.31112 3.58824 3.79939 3.89807 3.95889 4.00249 4.09748 4.11567 4.14135 4.43067 4.46046 4.58466 4.60873 4.66017 4.69716 4.75455 4.85335 5.10874 5.15100 5.18075 5.20416 5.27034 5.47900 5.60055 5.65830 5.68874 5.96618 5.97266 6.29598 6.75957 6.82138 6.91718 7.32475 8.86898 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.002878 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.337566 B = 9725.377121 C =10548.445795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.018 4.018 10 C -0.093 4.093 11 C -0.099 4.099 12 C -0.126 4.126 13 C 0.516 3.484 14 O -0.551 6.551 15 N -0.559 5.559 16 C 0.055 3.945 17 C 0.048 3.952 18 O -0.316 6.316 19 C 0.286 3.714 20 N -0.508 5.508 21 C 0.111 3.889 22 C -0.176 4.176 23 C -0.096 4.096 24 C 0.026 3.974 25 H 0.266 0.734 26 H 0.013 0.987 27 H 0.012 0.988 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.171 0.829 38 H 0.199 0.801 39 H 0.169 0.831 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.937 -16.057 -0.277 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.175 1.175 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.137 4.137 12 C -0.165 4.165 13 C 0.309 3.691 14 O -0.428 6.428 15 N -0.284 5.284 16 C -0.066 4.066 17 C -0.028 4.028 18 O -0.225 6.225 19 C 0.105 3.895 20 N -0.227 5.227 21 C -0.046 4.046 22 C -0.196 4.196 23 C -0.123 4.123 24 C -0.071 4.071 25 H 0.074 0.926 26 H 0.032 0.968 27 H 0.031 0.969 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.165 0.835 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.188 0.812 38 H 0.215 0.785 39 H 0.187 0.813 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 23.442 -16.401 -0.108 28.610 hybrid contribution -0.784 1.865 -0.082 2.025 sum 22.659 -14.536 -0.190 26.921 Atomic orbital electron populations 1.70057 1.08143 1.28057 1.52954 1.25986 0.95582 1.03378 0.94375 0.85712 0.79427 0.78720 0.79131 1.19283 1.20941 1.17496 1.21555 0.92170 0.93191 1.49815 0.94333 1.19579 0.93830 0.96012 0.96093 1.21326 0.93414 0.96702 1.01609 1.21313 0.95074 0.95197 1.02082 1.21783 0.87551 0.99959 1.07232 1.21605 0.91788 0.81708 0.74036 1.90554 1.70490 1.32785 1.49013 1.46043 1.03702 1.08810 1.69856 1.23197 0.98774 0.80736 1.03883 1.23806 0.78505 1.04217 0.96225 1.85919 1.31292 1.26801 1.78513 1.19197 0.88791 0.84269 0.97286 1.66938 1.04973 1.33565 1.17257 1.23065 1.01307 0.86022 0.94181 1.22412 0.93996 1.00789 1.02405 1.22309 0.95531 0.98759 0.95699 1.18970 0.84971 0.95726 1.07422 0.92556 0.96823 0.96920 0.92197 0.92174 0.92707 0.92738 0.85842 0.85472 0.83507 0.87718 0.90781 0.81207 0.78469 0.81342 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 2 C 0.00 0.20 5.47 84.65 0.46 0.66 16 3 Si 0.95 45.01 27.47 68.60 1.88 46.89 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 7 C -0.53 -30.29 9.66 25.60 0.25 -30.04 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 9 C -0.02 -0.82 4.04 29.85 0.12 -0.70 16 10 C -0.09 -3.27 5.15 30.60 0.16 -3.11 16 11 C -0.10 -2.84 4.52 30.60 0.14 -2.70 16 12 C -0.13 -2.42 4.18 29.85 0.12 -2.29 16 13 C 0.52 12.17 7.59 87.66 0.67 12.84 16 14 O -0.55 -17.16 12.88 -3.08 -0.04 -17.20 16 15 N -0.56 -11.14 3.01 -627.47 -1.89 -13.03 16 16 C 0.05 0.56 6.41 86.40 0.55 1.12 16 17 C 0.05 0.50 7.17 72.16 0.52 1.01 16 18 O -0.32 -6.44 10.40 -91.08 -0.95 -7.39 16 19 C 0.29 6.88 7.58 84.88 0.64 7.53 16 20 N -0.51 -12.23 10.38 -308.22 -3.20 -15.43 16 21 C 0.11 1.98 11.16 84.64 0.94 2.92 16 22 C -0.18 -3.19 10.12 22.38 0.23 -2.96 16 23 C -0.10 -2.31 9.04 22.52 0.20 -2.10 16 24 C 0.03 0.63 6.33 38.15 0.24 0.87 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 27 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.12 1.77 8.09 -2.39 -0.02 1.75 16 33 H 0.13 1.75 7.62 -2.39 -0.02 1.73 16 34 H 0.15 0.58 6.45 -2.39 -0.02 0.57 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.17 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.16 4.35 5.24 -3.10 -0.02 4.34 16 Total: -1.00 -79.55 328.74 2.34 -77.22 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 0.98 Total: 5.31 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 5.25 Total: -16.97 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -4.79 Total: -87.87 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.99 Total: -24.59 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -79.55 2.34 -77.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588939993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.741 kcal (2) G-P(sol) polarization free energy of solvation -79.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds