Wall clock time and date at job start Tue Mar 31 2020 06:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46847 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46812 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47136 * 179.97438 * 11 10 9 13 13 C 1.46901 * 111.00185 * 179.97438 * 12 11 10 14 14 H 1.08990 * 110.27132 * 325.70188 * 13 12 11 15 15 C 1.54349 * 110.30314 * 203.62692 * 13 12 11 16 16 C 1.54494 * 102.32814 * 214.78962 * 15 13 12 17 17 C 1.51362 * 105.22158 * 26.23599 * 16 15 13 18 18 C 1.38271 * 109.75208 * 342.87877 * 17 16 15 19 19 C 1.38452 * 119.84566 * 180.02562 * 18 17 16 20 20 C 1.38146 * 120.21907 * 0.02562 * 19 18 17 21 21 C 1.38214 * 119.93417 * 359.97438 * 20 19 18 22 22 C 1.38146 * 119.93446 * 359.97438 * 21 20 19 23 23 N 1.48017 * 119.88956 * 180.02562 * 22 21 20 24 24 O 1.21796 * 120.00229 * 0.02562 * 23 22 21 25 25 O 1.21803 * 119.99957 * 179.97438 * 23 22 21 26 26 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 28 28 H 1.08994 * 109.47301 * 59.99976 * 9 7 2 29 29 H 1.09000 * 109.46719 * 299.99848 * 10 9 7 30 30 H 1.08994 * 109.47402 * 59.99779 * 10 9 7 31 31 H 1.09000 * 109.47115 * 299.99312 * 11 10 9 32 32 H 1.08994 * 109.47558 * 59.99580 * 11 10 9 33 33 H 1.00902 * 110.99974 * 56.04151 * 12 11 10 34 34 H 1.09002 * 110.82136 * 332.94957 * 15 13 12 35 35 H 1.09001 * 110.82059 * 96.49667 * 15 13 12 36 36 H 1.09000 * 110.21748 * 267.32701 * 16 15 13 37 37 H 1.09003 * 110.41933 * 145.25315 * 16 15 13 38 38 H 1.08004 * 119.88452 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.03313 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.02915 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4803 -4.9870 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 1.7346 -7.3949 0.0018 14 1 0.8119 -7.3241 0.5776 15 6 2.6449 -8.4978 0.5826 16 6 2.2427 -9.7324 -0.2547 17 6 1.7284 -9.1740 -1.5642 18 6 1.4364 -7.8306 -1.4168 19 6 0.9479 -7.1095 -2.4931 20 6 0.7511 -7.7280 -3.7126 21 6 1.0430 -9.0710 -3.8598 22 6 1.5315 -9.7919 -2.7874 23 7 1.8443 -11.2299 -2.9464 24 8 1.6714 -11.7755 -4.0215 25 8 2.2755 -11.8673 -2.0023 26 1 -0.4850 -0.8401 0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8896 29 1 2.8726 -3.6046 -0.8877 30 1 2.8713 -3.6039 0.8922 31 1 0.8528 -5.0447 0.8905 32 1 0.8546 -5.0449 -0.8894 33 1 3.0693 -6.0366 0.7836 34 1 3.6961 -8.2527 0.4303 35 1 2.4327 -8.6587 1.6396 36 1 1.4567 -10.2917 0.2527 37 1 3.1081 -10.3715 -0.4298 38 1 0.7200 -6.0600 -2.3788 39 1 0.3696 -7.1628 -4.5500 40 1 0.8901 -9.5559 -4.8126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594493945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:39 Heat of formation + Delta-G solvation = 2.774911 kcal Electronic energy + Delta-G solvation = -22276.324982 eV Core-core repulsion = 18865.174918 eV Total energy + Delta-G solvation = -3411.150064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.38388 -40.63629 -37.28256 -36.69868 -35.34966 -33.63223 -32.24738 -30.84233 -29.65138 -27.24871 -26.41578 -24.98851 -22.86703 -22.66683 -21.76790 -21.21273 -20.44755 -18.78216 -18.61374 -17.71117 -16.82954 -16.61226 -16.32922 -15.77107 -15.30309 -14.52558 -14.26016 -14.04331 -13.76606 -13.52590 -13.31030 -13.03333 -12.46132 -12.23839 -12.13210 -11.91911 -11.79887 -11.68349 -11.45054 -11.39161 -11.26798 -11.03644 -10.79650 -10.68375 -10.17383 -9.96997 -9.85727 -9.73192 -9.23321 -8.60223 -8.53507 -8.37569 -6.41731 -4.11037 -0.31239 0.66751 1.20284 1.26058 3.00986 3.40316 3.43934 3.57453 3.74554 3.95303 4.06147 4.31534 4.48512 4.50492 4.58444 4.63896 4.83011 4.87276 5.07151 5.22869 5.29087 5.35384 5.37337 5.44941 5.50428 5.59003 5.64504 5.74863 5.78316 5.92372 6.02889 6.06084 6.32542 6.42813 6.47048 6.84760 6.99775 7.29610 7.32764 7.45911 7.50902 8.16285 8.41851 8.83439 9.61369 10.99014 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031802 B = 0.002790 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.245044 B =10032.889317 C =10600.555792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 1.073 2.927 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.601 4.601 8 H 0.050 0.950 9 C 0.009 3.991 10 C -0.100 4.100 11 C 0.053 3.947 12 N -0.681 5.681 13 C 0.121 3.879 14 H 0.069 0.931 15 C -0.123 4.123 16 C -0.082 4.082 17 C -0.032 4.032 18 C -0.072 4.072 19 C -0.040 4.040 20 C -0.119 4.119 21 C -0.060 4.060 22 C -0.038 4.038 23 N 0.033 4.967 24 O -0.173 6.173 25 O -0.163 6.163 26 H 0.268 0.732 27 H 0.005 0.995 28 H 0.006 0.994 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.347 0.653 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 -19.936 -2.753 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.902 3.098 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.639 4.639 8 H 0.068 0.932 9 C -0.028 4.028 10 C -0.138 4.138 11 C -0.075 4.075 12 N -0.313 5.313 13 C 0.011 3.989 14 H 0.086 0.914 15 C -0.161 4.161 16 C -0.120 4.120 17 C -0.034 4.034 18 C -0.074 4.074 19 C -0.058 4.058 20 C -0.138 4.138 21 C -0.079 4.079 22 C -0.121 4.121 23 N 0.550 4.450 24 O -0.386 6.386 25 O -0.379 6.379 26 H 0.079 0.921 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.007 -17.599 -3.355 18.028 hybrid contribution -0.154 -2.012 0.676 2.128 sum 1.854 -19.611 -2.679 19.879 Atomic orbital electron populations 1.70738 1.06908 1.30567 1.46916 1.25867 0.96555 1.02814 0.93758 0.83482 0.74486 0.74824 0.77005 1.21494 1.21307 1.21327 1.22103 0.94381 0.91955 1.55505 0.93212 1.19196 0.94604 0.93240 0.95799 1.21498 0.98940 0.92231 1.01177 1.22314 0.94227 0.91004 0.99933 1.60600 1.20071 1.00318 1.50263 1.21056 0.96888 0.90676 0.90311 0.91355 1.22627 1.00797 0.92945 0.99701 1.21258 1.02435 0.98134 0.90131 1.20408 0.94792 0.94865 0.93329 1.20602 0.98113 0.91908 0.96755 1.21342 0.92257 1.01097 0.91151 1.21174 1.00936 0.93187 0.98457 1.20970 0.94641 0.94428 0.97841 1.20730 1.13709 0.80756 0.96930 1.43664 0.97773 1.03401 1.00117 1.94522 1.57220 1.71962 1.14946 1.94503 1.46160 1.64736 1.32454 0.92133 0.97708 0.97561 0.92312 0.93256 0.95357 0.91550 0.83331 0.89316 0.89575 0.88734 0.88436 0.83752 0.83273 0.82937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.69 13.65 55.43 0.76 -26.93 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.10 29.90 -169.99 -5.08 20.02 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.60 -16.86 9.11 -34.44 -0.31 -17.17 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 9 C 0.01 0.22 4.28 -27.88 -0.12 0.11 16 10 C -0.10 -1.94 5.41 -26.73 -0.14 -2.08 16 11 C 0.05 0.80 5.46 -3.83 -0.02 0.78 16 12 N -0.68 -8.37 6.28 -106.86 -0.67 -9.04 16 13 C 0.12 1.25 3.19 -67.83 -0.22 1.04 16 14 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 15 C -0.12 -1.01 6.49 -25.24 -0.16 -1.17 16 16 C -0.08 -0.74 5.55 -26.77 -0.15 -0.89 16 17 C -0.03 -0.35 6.01 -104.21 -0.63 -0.98 16 18 C -0.07 -0.80 5.78 -104.20 -0.60 -1.40 16 19 C -0.04 -0.43 9.71 -39.54 -0.38 -0.81 16 20 C -0.12 -1.08 10.05 -39.62 -0.40 -1.48 16 21 C -0.06 -0.59 9.55 -39.62 -0.38 -0.96 16 22 C -0.04 -0.44 6.85 -79.90 -0.55 -0.99 16 23 N 0.03 0.44 4.45 33.98 0.15 0.59 16 24 O -0.17 -2.36 18.44 -29.46 -0.54 -2.90 16 25 O -0.16 -2.16 16.76 -29.46 -0.49 -2.66 16 26 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 27 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 28 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.07 0.98 5.80 -51.93 -0.30 0.68 16 33 H 0.35 3.90 8.41 -39.29 -0.33 3.57 16 34 H 0.09 0.73 8.07 -51.93 -0.42 0.32 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.89 7.13 -51.93 -0.37 0.52 16 38 H 0.14 1.56 5.98 -52.48 -0.31 1.25 16 39 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.15 1.24 7.60 -52.49 -0.40 0.84 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -31.62 334.22 -10.41 -42.03 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.40 Total: -0.42 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -4.16 Total: -25.72 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.24 Total: -35.39 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -1.04 Total: -5.56 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.62 -10.41 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594493945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.809 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds