Wall clock time and date at job start Tue Mar 31 2020 06:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46847 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46812 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47136 * 179.97438 * 11 10 9 13 13 C 1.46901 * 111.00185 * 179.97438 * 12 11 10 14 14 H 1.08990 * 110.27132 * 325.70188 * 13 12 11 15 15 C 1.54349 * 110.30314 * 203.62692 * 13 12 11 16 16 C 1.54494 * 102.32814 * 214.78962 * 15 13 12 17 17 C 1.51362 * 105.22158 * 26.23599 * 16 15 13 18 18 C 1.38271 * 109.75208 * 342.87877 * 17 16 15 19 19 C 1.38452 * 119.84566 * 180.02562 * 18 17 16 20 20 C 1.38146 * 120.21907 * 0.02562 * 19 18 17 21 21 C 1.38214 * 119.93417 * 359.97438 * 20 19 18 22 22 C 1.38146 * 119.93446 * 359.97438 * 21 20 19 23 23 N 1.48017 * 119.88956 * 180.02562 * 22 21 20 24 24 O 1.21796 * 120.00229 * 0.02562 * 23 22 21 25 25 O 1.21803 * 119.99957 * 179.97438 * 23 22 21 26 26 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 28 28 H 1.08994 * 109.47301 * 59.99976 * 9 7 2 29 29 H 1.09000 * 109.46719 * 299.99848 * 10 9 7 30 30 H 1.08994 * 109.47402 * 59.99779 * 10 9 7 31 31 H 1.09000 * 109.47115 * 299.99312 * 11 10 9 32 32 H 1.08994 * 109.47558 * 59.99580 * 11 10 9 33 33 H 1.00902 * 110.99974 * 56.04151 * 12 11 10 34 34 H 1.09002 * 110.82136 * 332.94957 * 15 13 12 35 35 H 1.09001 * 110.82059 * 96.49667 * 15 13 12 36 36 H 1.09000 * 110.21748 * 267.32701 * 16 15 13 37 37 H 1.09003 * 110.41933 * 145.25315 * 16 15 13 38 38 H 1.08004 * 119.88452 * 180.02562 * 19 18 17 39 39 H 1.07998 * 120.03313 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.02915 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4803 -4.9870 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 1.7346 -7.3949 0.0018 14 1 0.8119 -7.3241 0.5776 15 6 2.6449 -8.4978 0.5826 16 6 2.2427 -9.7324 -0.2547 17 6 1.7284 -9.1740 -1.5642 18 6 1.4364 -7.8306 -1.4168 19 6 0.9479 -7.1095 -2.4931 20 6 0.7511 -7.7280 -3.7126 21 6 1.0430 -9.0710 -3.8598 22 6 1.5315 -9.7919 -2.7874 23 7 1.8443 -11.2299 -2.9464 24 8 1.6714 -11.7755 -4.0215 25 8 2.2755 -11.8673 -2.0023 26 1 -0.4850 -0.8401 0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8896 29 1 2.8726 -3.6046 -0.8877 30 1 2.8713 -3.6039 0.8922 31 1 0.8528 -5.0447 0.8905 32 1 0.8546 -5.0449 -0.8894 33 1 3.0693 -6.0366 0.7836 34 1 3.6961 -8.2527 0.4303 35 1 2.4327 -8.6587 1.6396 36 1 1.4567 -10.2917 0.2527 37 1 3.1081 -10.3715 -0.4298 38 1 0.7200 -6.0600 -2.3788 39 1 0.3696 -7.1628 -4.5500 40 1 0.8901 -9.5559 -4.8126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594493945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:38 Heat of formation + Delta-G solvation = -14.686918 kcal Electronic energy + Delta-G solvation = -22277.082184 eV Core-core repulsion = 18865.174918 eV Total energy + Delta-G solvation = -3411.907266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.33104 -41.46049 -38.23536 -37.71666 -36.65430 -35.26338 -33.34602 -32.27845 -30.43316 -28.54446 -27.37129 -26.43961 -24.33500 -23.66962 -22.80198 -22.10431 -21.81836 -19.74528 -19.52021 -18.91933 -18.67652 -17.48497 -17.17751 -16.57338 -16.37553 -15.69654 -15.64403 -15.46252 -14.95829 -14.69012 -14.54331 -14.07740 -13.64483 -13.43500 -13.30881 -13.04955 -12.85303 -12.70117 -12.57861 -12.51459 -12.33674 -12.24077 -12.01061 -11.98089 -11.93196 -11.65745 -11.63832 -10.65974 -10.56646 -10.55341 -10.01935 -9.53039 -8.69595 -6.40061 -1.23598 -0.10454 0.28782 0.35432 1.52069 1.61005 1.77592 2.20580 2.55166 2.99751 3.09513 3.15022 3.18808 3.55626 3.74058 3.80061 3.85855 4.07969 4.10799 4.15854 4.22087 4.38212 4.47739 4.57013 4.59264 4.66840 4.79566 4.82921 4.88058 4.95284 4.99785 5.07532 5.08454 5.11749 5.20733 5.43236 5.48756 5.53064 5.89700 6.03208 6.19057 6.36221 6.50068 6.58986 7.41398 8.71676 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031802 B = 0.002790 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.245044 B =10032.889317 C =10600.555792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.040 4.040 3 Si 1.120 2.880 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.618 4.618 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.087 4.087 11 C 0.068 3.932 12 N -0.681 5.681 13 C 0.121 3.879 14 H 0.073 0.927 15 C -0.112 4.112 16 C -0.081 4.081 17 C -0.038 4.038 18 C -0.086 4.086 19 C -0.050 4.050 20 C -0.112 4.112 21 C -0.058 4.058 22 C -0.055 4.055 23 N 0.034 4.966 24 O -0.192 6.192 25 O -0.170 6.170 26 H 0.256 0.744 27 H -0.012 1.012 28 H -0.009 1.009 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.355 0.645 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.141 0.859 39 H 0.177 0.823 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 -20.083 -2.611 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.237 4.237 3 Si 0.942 3.058 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.656 4.656 8 H 0.067 0.933 9 C -0.028 4.028 10 C -0.125 4.125 11 C -0.061 4.061 12 N -0.313 5.313 13 C 0.011 3.989 14 H 0.091 0.909 15 C -0.150 4.150 16 C -0.118 4.118 17 C -0.040 4.040 18 C -0.088 4.088 19 C -0.068 4.068 20 C -0.130 4.130 21 C -0.077 4.077 22 C -0.138 4.138 23 N 0.548 4.452 24 O -0.402 6.402 25 O -0.386 6.386 26 H 0.066 0.934 27 H 0.007 0.993 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.176 0.824 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.159 0.841 39 H 0.194 0.806 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.821 -17.794 -3.227 18.303 hybrid contribution -0.423 -1.978 0.621 2.116 sum 2.398 -19.772 -2.606 20.086 Atomic orbital electron populations 1.70870 1.07917 1.29944 1.49010 1.27401 0.96646 1.06863 0.92810 0.82891 0.74278 0.71080 0.77567 1.19498 1.20426 1.20408 1.22561 0.94669 0.93598 1.54782 0.93313 1.19145 0.95115 0.94427 0.94146 1.21256 0.97758 0.92604 1.00859 1.22001 0.94024 0.89929 1.00124 1.60488 1.19641 1.00337 1.50862 1.21143 0.97435 0.90053 0.90287 0.90929 1.22618 1.00273 0.91385 1.00722 1.21322 1.02618 0.98475 0.89428 1.20631 0.94577 0.94940 0.93855 1.20762 0.98701 0.92077 0.97260 1.21496 0.92389 1.01067 0.91867 1.21461 0.99918 0.92914 0.98699 1.21244 0.93781 0.94637 0.98060 1.20974 1.14987 0.79910 0.97973 1.43885 0.97446 1.04022 0.99862 1.94509 1.57975 1.72512 1.15186 1.94483 1.46332 1.65298 1.32439 0.93404 0.99330 0.99101 0.92995 0.93068 0.95273 0.91436 0.82447 0.89232 0.87284 0.87681 0.88574 0.84145 0.80564 0.81401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.52 13.65 21.45 0.29 -57.22 16 2 C -0.04 -2.29 5.46 84.65 0.46 -1.83 16 3 Si 1.12 49.74 29.90 68.60 2.05 51.79 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.62 -34.78 9.11 25.60 0.23 -34.55 16 8 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 9 C 0.01 0.46 4.28 29.85 0.13 0.59 16 10 C -0.09 -3.30 5.41 30.60 0.17 -3.13 16 11 C 0.07 1.97 5.46 86.30 0.47 2.45 16 12 N -0.68 -15.56 6.28 -492.00 -3.09 -18.65 16 13 C 0.12 2.27 3.19 44.84 0.14 2.41 16 14 H 0.07 1.34 7.84 -2.39 -0.02 1.32 16 15 C -0.11 -1.57 6.49 31.56 0.20 -1.37 16 16 C -0.08 -1.32 5.55 30.57 0.17 -1.15 16 17 C -0.04 -0.79 6.01 -19.60 -0.12 -0.90 16 18 C -0.09 -1.79 5.78 -19.59 -0.11 -1.90 16 19 C -0.05 -1.00 9.71 22.30 0.22 -0.78 16 20 C -0.11 -1.82 10.05 22.24 0.22 -1.60 16 21 C -0.06 -1.06 9.55 22.24 0.21 -0.84 16 22 C -0.06 -1.23 6.85 36.40 0.25 -0.98 16 23 N 0.03 0.87 4.45 -46.39 -0.21 0.66 16 24 O -0.19 -5.16 18.44 18.89 0.35 -4.81 16 25 O -0.17 -4.41 16.76 18.88 0.32 -4.10 16 26 H 0.26 15.78 7.22 -92.71 -0.67 15.11 16 27 H -0.01 -0.61 8.01 -2.39 -0.02 -0.63 16 28 H -0.01 -0.49 8.01 -2.39 -0.02 -0.51 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.03 0.84 8.07 -2.39 -0.02 0.82 16 32 H 0.07 1.95 5.80 -2.39 -0.01 1.94 16 33 H 0.36 7.21 8.41 -89.69 -0.75 6.46 16 34 H 0.09 1.27 8.07 -2.39 -0.02 1.25 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 1.61 7.13 -2.39 -0.02 1.59 16 38 H 0.14 2.91 5.98 -2.91 -0.02 2.89 16 39 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.17 2.45 7.60 -2.91 -0.02 2.43 16 Total: -1.00 -67.94 334.22 2.77 -65.17 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.41 Total: 10.74 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 2.65 Total: -43.58 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -3.00 Total: -75.22 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.66 Total: -8.91 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Total: -67.94 2.77 -65.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594493945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.488 kcal (2) G-P(sol) polarization free energy of solvation -67.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds