Wall clock time and date at job start Tue Mar 31 2020 06:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99899 * 2 1 4 4 H 1.48503 * 109.47036 * 269.99534 * 3 2 1 5 5 H 1.48493 * 109.47347 * 29.99793 * 3 2 1 6 6 H 1.48509 * 109.46950 * 149.99965 * 3 2 1 7 7 C 1.37878 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46841 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46668 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46833 * 179.97438 * 11 10 9 13 13 C 1.46897 * 110.99741 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.34687 * 35.67543 * 13 12 11 15 15 C 1.54528 * 110.27021 * 157.92637 * 13 12 11 16 16 C 1.54343 * 102.31825 * 145.54793 * 15 13 12 17 17 C 1.51373 * 105.17425 * 333.44255 * 16 15 13 18 18 C 1.38261 * 109.75010 * 17.18330 * 17 16 15 19 19 C 1.38455 * 119.84804 * 180.02562 * 18 17 16 20 20 C 1.38143 * 120.21724 * 359.96362 * 19 18 17 21 21 C 1.38217 * 119.93352 * 0.02562 * 20 19 18 22 22 C 1.38142 * 119.93433 * 0.02562 * 21 20 19 23 23 N 1.48019 * 119.89223 * 179.97438 * 22 21 20 24 24 O 1.21795 * 120.00051 * 359.97438 * 23 22 21 25 25 O 1.21798 * 120.00158 * 179.97438 * 23 22 21 26 26 H 0.96997 * 119.99530 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47060 * 59.99938 * 9 7 2 28 28 H 1.09001 * 109.47176 * 299.99711 * 9 7 2 29 29 H 1.08995 * 109.47430 * 60.00059 * 10 9 7 30 30 H 1.09000 * 109.47395 * 299.98947 * 10 9 7 31 31 H 1.08995 * 109.47087 * 59.99922 * 11 10 9 32 32 H 1.09001 * 109.47321 * 299.99589 * 11 10 9 33 33 H 1.00901 * 110.99757 * 56.04837 * 12 11 10 34 34 H 1.08998 * 111.03442 * 27.26509 * 15 13 12 35 35 H 1.08995 * 110.85040 * 263.74241 * 15 13 12 36 36 H 1.08997 * 110.30404 * 214.52311 * 16 15 13 37 37 H 1.09001 * 110.39028 * 92.40833 * 16 15 13 38 38 H 1.07999 * 119.88969 * 179.97438 * 19 18 17 39 39 H 1.07997 * 120.03342 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.02910 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4348 -6.1037 0.0031 13 6 1.7345 -7.3949 0.0043 14 1 0.8239 -7.3328 -0.5915 15 6 2.6600 -8.5064 -0.5398 16 6 2.2323 -9.7303 0.2976 17 6 1.6899 -9.1567 1.5892 18 6 1.4073 -7.8137 1.4217 19 6 0.8979 -7.0795 2.4792 20 6 0.6707 -7.6847 3.7001 21 6 0.9531 -9.0273 3.8675 22 6 1.4624 -9.7613 2.8138 23 7 1.7649 -11.1989 2.9943 24 8 1.5653 -11.7328 4.0707 25 8 2.2136 -11.8480 2.0665 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5568 0.8903 29 1 2.8712 -3.6039 0.8922 30 1 2.8725 -3.6048 -0.8878 31 1 0.8539 -5.0455 -0.8877 32 1 0.8532 -5.0442 0.8923 33 1 3.0696 -6.0362 0.7845 34 1 3.7080 -8.2638 -0.3641 35 1 2.4766 -8.6793 -1.6002 36 1 3.0917 -10.3696 0.4993 37 1 1.4564 -10.2932 -0.2213 38 1 0.6772 -6.0303 2.3492 39 1 0.2729 -7.1093 4.5229 40 1 0.7765 -9.5019 4.8215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594493946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:42 Heat of formation + Delta-G solvation = 6.329822 kcal Electronic energy + Delta-G solvation = -22269.019318 eV Core-core repulsion = 18858.023406 eV Total energy + Delta-G solvation = -3410.995911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.42191 -40.72098 -37.20964 -36.70768 -35.26858 -33.41874 -32.22422 -30.84182 -29.67622 -27.38502 -26.48454 -25.23754 -22.83770 -22.58349 -21.72024 -21.31335 -20.21722 -18.79993 -18.70227 -17.73446 -16.81037 -16.35896 -16.09544 -15.63413 -15.51319 -14.60706 -14.50370 -14.01544 -13.91252 -13.37111 -13.12917 -12.55552 -12.36700 -12.28021 -12.20965 -11.98594 -11.74054 -11.55641 -11.44945 -11.32728 -11.22678 -11.09864 -10.91328 -10.69634 -10.54616 -9.86445 -9.81449 -9.44964 -9.33204 -9.13833 -8.41695 -8.39558 -6.06266 -4.08613 -0.37271 0.58300 1.13607 1.22102 2.92857 3.27864 3.34329 3.37445 3.71428 3.88812 4.18244 4.28478 4.42209 4.51405 4.59119 4.59600 4.81024 4.92560 5.14519 5.25687 5.28794 5.29958 5.35458 5.53659 5.60623 5.62984 5.71753 5.83274 5.87127 5.87958 5.95527 6.16189 6.28018 6.57446 6.61007 7.01162 7.10535 7.37333 7.47525 7.59800 7.73206 7.93332 8.36319 8.98488 9.55966 11.05105 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031839 B = 0.002791 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.202211 B =10031.489759 C =10600.383222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.053 3.947 12 N -0.675 5.675 13 C 0.126 3.874 14 H 0.101 0.899 15 C -0.107 4.107 16 C -0.089 4.089 17 C -0.025 4.025 18 C -0.126 4.126 19 C -0.052 4.052 20 C -0.117 4.117 21 C -0.058 4.058 22 C -0.038 4.038 23 N 0.032 4.968 24 O -0.173 6.173 25 O -0.159 6.159 26 H 0.261 0.739 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.342 0.658 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -19.618 4.400 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.075 4.075 12 N -0.304 5.304 13 C 0.015 3.985 14 H 0.119 0.881 15 C -0.145 4.145 16 C -0.126 4.126 17 C -0.027 4.027 18 C -0.129 4.129 19 C -0.070 4.070 20 C -0.136 4.136 21 C -0.077 4.077 22 C -0.121 4.121 23 N 0.550 4.450 24 O -0.386 6.386 25 O -0.376 6.376 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.160 0.840 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.461 -18.785 3.627 19.187 hybrid contribution 0.007 0.594 1.214 1.352 sum 1.468 -18.191 4.842 18.881 Atomic orbital electron populations 1.69960 1.06072 1.26649 1.50897 1.25027 0.94854 0.99306 0.95290 0.86595 0.79839 0.83411 0.78175 1.20603 1.21230 1.19869 1.21241 0.93065 0.91019 1.50547 0.92661 1.19054 0.93947 0.91375 0.97088 1.21644 0.99248 0.92801 1.00912 1.22320 0.94225 0.90855 1.00090 1.60727 1.19576 1.00454 1.49658 1.21345 0.97585 0.90810 0.88721 0.88067 1.22434 1.00450 0.91583 1.00027 1.21369 1.02119 0.98701 0.90386 1.20512 0.94103 0.94884 0.93184 1.21748 0.99427 0.92999 0.98697 1.21428 0.92727 1.01328 0.91548 1.21176 1.00792 0.93313 0.98315 1.21000 0.94364 0.94267 0.98060 1.20816 1.13307 0.80876 0.97143 1.43668 0.97856 1.03380 1.00130 1.94525 1.56939 1.72818 1.14344 1.94511 1.45363 1.63706 1.34007 0.92985 0.96553 0.96886 0.93618 0.92345 0.91080 0.95529 0.83953 0.89713 0.89314 0.88556 0.88615 0.83631 0.83204 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.06 5.41 -26.73 -0.14 -2.20 16 11 C 0.05 0.79 5.46 -3.82 -0.02 0.77 16 12 N -0.68 -8.30 6.27 -106.74 -0.67 -8.97 16 13 C 0.13 1.29 3.19 -67.74 -0.22 1.07 16 14 H 0.10 1.04 7.86 -51.93 -0.41 0.63 16 15 C -0.11 -0.92 6.78 -25.23 -0.17 -1.09 16 16 C -0.09 -0.79 5.55 -26.85 -0.15 -0.93 16 17 C -0.02 -0.26 6.01 -104.20 -0.63 -0.89 16 18 C -0.13 -1.29 5.52 -104.20 -0.57 -1.87 16 19 C -0.05 -0.51 9.68 -39.54 -0.38 -0.89 16 20 C -0.12 -0.99 10.05 -39.62 -0.40 -1.39 16 21 C -0.06 -0.54 9.55 -39.62 -0.38 -0.92 16 22 C -0.04 -0.43 6.85 -79.90 -0.55 -0.98 16 23 N 0.03 0.41 4.45 33.98 0.15 0.56 16 24 O -0.17 -2.31 18.44 -29.46 -0.54 -2.86 16 25 O -0.16 -2.09 16.76 -29.46 -0.49 -2.58 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 32 H 0.03 0.38 5.65 -51.93 -0.29 0.09 16 33 H 0.34 4.09 8.48 -39.29 -0.33 3.75 16 34 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.86 7.14 -51.93 -0.37 0.49 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.15 1.44 5.87 -52.49 -0.31 1.13 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.15 1.18 7.60 -52.49 -0.40 0.78 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -30.42 335.38 -10.40 -40.82 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.45 Total: -0.56 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -4.16 Total: -22.07 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.22 Total: -34.06 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -1.04 Total: -5.43 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.42 -10.40 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594493946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.151 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds